{"id":103979,"name":null,"description":"Collaboration between BBP and AIBS","url":"https://github.com/alleninstitute/sonata","last_synced_at":"2025-09-09T03:54:59.533Z","repository":{"id":48371666,"uuid":"111609058","full_name":"AllenInstitute/sonata","owner":"AllenInstitute","description":"Collaboration between BBP and AIBS","archived":false,"fork":false,"pushed_at":"2024-07-17T21:38:58.000Z","size":145756,"stargazers_count":57,"open_issues_count":38,"forks_count":36,"subscribers_count":20,"default_branch":"master","last_synced_at":"2025-08-22T21:24:17.555Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-11-21T22:35:22.000Z","updated_at":"2025-08-13T08:21:25.000Z","dependencies_parsed_at":"2023-10-12T06:20:30.833Z","dependency_job_id":"8e4e81d5-2214-4977-a9e6-5f2c8cf0641b","html_url":"https://github.com/AllenInstitute/sonata","commit_stats":{"total_commits":115,"total_committers":17,"mean_commits":6.764705882352941,"dds":0.7043478260869565,"last_synced_commit":"7454a68fba4d33bc79acf03699a4aeca2ebf9ed7"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/AllenInstitute/sonata","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/sonata/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/sbom","scorecard":{"id":12062,"data":{"date":"2025-08-11","repo":{"name":"github.com/AllenInstitute/sonata","commit":"7454a68fba4d33bc79acf03699a4aeca2ebf9ed7"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.3,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Code-Review","score":2,"reason":"Found 4/14 approved changesets -- score normalized to 2","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 26 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-14T14:50:57.174Z","repository_id":48371666,"created_at":"2025-08-14T14:50:57.174Z","updated_at":"2025-08-14T14:50:57.174Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274240439,"owners_count":25247574,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"AllenInstitute","name":"Allen Institute","uuid":"1848392","kind":"organization","description":"Please visit http://alleninstitute.github.io/ for more information.","email":null,"website":"https://alleninstitute.org","location":"Seattle, WA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/1848392?v=4","repositories_count":184,"last_synced_at":"2023-03-22T17:11:50.580Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/AllenInstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T11:18:51.640Z","updated_at":"2023-03-22T17:11:51.155Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute/repositories"},"packages":[{"id":2926030,"name":"sonata","ecosystem":"pypi","description":"SONATA Data Format API","homepage":"https://github.com/AllenInstitute/sonata","licenses":"BSD License","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/AllenInstitute/sonata","keywords_array":["neuroscience","scientific","modeling","networks","simulation"],"namespace":null,"versions_count":2,"first_release_published_at":"2018-11-28T15:32:09.000Z","latest_release_published_at":"2019-10-01T19:17:08.000Z","latest_release_number":"0.0.2","last_synced_at":"2025-08-22T20:12:33.877Z","created_at":"2022-04-10T12:39:57.985Z","updated_at":"2025-08-23T04:27:45.129Z","registry_url":"https://pypi.org/project/sonata/","install_command":"pip install sonata --index-url https://pypi.org/simple","documentation_url":"https://sonata.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Science/Research","License :: OSI Approved :: BSD License","Natural Language :: English","Operating System :: OS Independent","Programming Language :: Python :: 2.7","Programming Language :: Python :: 3.6","Topic :: Scientific/Engineering :: Artificial Intelligence","Topic :: Scientific/Engineering :: Bio-Informatics","Topic :: Scientific/Engineering :: Medical Science Apps."],"normalized_name":"sonata","project_status":null},"repo_metadata":{"id":48371666,"uuid":"111609058","full_name":"AllenInstitute/sonata","owner":"AllenInstitute","description":"Collaboration between BBP and AIBS","archived":false,"fork":false,"pushed_at":"2024-07-17T21:38:58.000Z","size":145756,"stargazers_count":57,"open_issues_count":38,"forks_count":36,"subscribers_count":20,"default_branch":"master","last_synced_at":"2025-08-22T21:24:17.555Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/AllenInstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-11-21T22:35:22.000Z","updated_at":"2025-08-13T08:21:25.000Z","dependencies_parsed_at":"2023-10-12T06:20:30.833Z","dependency_job_id":"8e4e81d5-2214-4977-a9e6-5f2c8cf0641b","html_url":"https://github.com/AllenInstitute/sonata","commit_stats":{"total_commits":115,"total_committers":17,"mean_commits":6.764705882352941,"dds":0.7043478260869565,"last_synced_commit":"7454a68fba4d33bc79acf03699a4aeca2ebf9ed7"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/AllenInstitute/sonata","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","download_url":"https://codeload.github.com/AllenInstitute/sonata/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/sbom","scorecard":{"id":12062,"data":{"date":"2025-08-11","repo":{"name":"github.com/AllenInstitute/sonata","commit":"7454a68fba4d33bc79acf03699a4aeca2ebf9ed7"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.3,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Code-Review","score":2,"reason":"Found 4/14 approved changesets -- score normalized to 2","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 26 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-14T14:50:57.174Z","repository_id":48371666,"created_at":"2025-08-14T14:50:57.174Z","updated_at":"2025-08-14T14:50:57.174Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271743279,"owners_count":24813325,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-23T02:00:09.327Z","response_time":69,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"AllenInstitute","name":"Allen Institute","uuid":"1848392","kind":"organization","description":"Please visit http://alleninstitute.github.io/ for more information.","email":null,"website":"https://alleninstitute.org","location":"Seattle, WA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/1848392?v=4","repositories_count":184,"last_synced_at":"2023-03-22T17:11:50.580Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/AllenInstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T11:18:51.640Z","updated_at":"2023-03-22T17:11:51.155Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/AllenInstitute/repositories"},"tags":[]},"repo_metadata_updated_at":"2025-08-23T04:27:45.129Z","dependent_packages_count":1,"downloads":143,"downloads_period":"last-month","dependent_repos_count":2,"rankings":{"downloads":20.669966971583385,"dependent_repos_count":11.52796803652968,"dependent_packages_count":4.785605701706821,"stargazers_count":9.61680772662333,"forks_count":7.137490036884926,"docker_downloads_count":null,"average":10.747567694665628},"purl":"pkg:pypi/sonata","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/sonata","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/sonata","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/sonata/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-22T20:19:47.619Z","issues_count":56,"pull_requests_count":47,"avg_time_to_close_issue":26541079.185185187,"avg_time_to_close_pull_request":7414466.179487179,"issues_closed_count":27,"pull_requests_closed_count":39,"pull_request_authors_count":16,"issue_authors_count":14,"avg_comments_per_issue":4.303571428571429,"avg_comments_per_pull_request":0.574468085106383,"merged_pull_requests_count":35,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/issues","maintainers":[{"login":"kaeldai","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kaeldai"},{"login":"hernando","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/hernando"},{"login":"wvangeit","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/wvangeit"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/sonata/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/sonata/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/sonata/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/sonata/related_packages","maintainers":[{"uuid":"kaeldai","login":"kaeldai","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/kaeldai/","role":null,"created_at":"2023-01-25T07:54:36.161Z","updated_at":"2023-01-25T07:54:36.161Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/kaeldai/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726374,"maintainers_count":308843,"namespaces_count":0,"keywords_count":238245,"github":"pypi","metadata":{"funded_packages_count":50579},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-08T05:32:36.857Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":661997,"full_name":"AllenInstitute/sonata","default_branch":"master","committers":[{"name":"kaeld","email":"kaeld@alleninstitute.org","login":"kaeldai","count":40},{"name":"Juan Hernando Vieites","email":"juan.hernando@epfl.ch","login":null,"count":34},{"name":"Padraig Gleeson","email":"p.gleeson@gmail.com","login":"pgleeson","count":12},{"name":"Arseny V. Povolotsky","email":"arseny.povolotsky@epfl.ch","login":"arsenius7","count":10},{"name":"eilif","email":"eilif.mueller@epfl.ch","login":"markovg","count":4},{"name":"xpliu16","email":"xpliu16@gmail.com","login":"xpliu16","count":4},{"name":"kael","email":"you@example.com","login":"invalid-email-address","count":2},{"name":"Andrew Davison","email":"andrew.davison@unic.cnrs-gif.fr","login":"apdavison","count":2},{"name":"alex4200","email":"alexander.dietz@epfl.ch","login":"alex4200","count":2},{"name":"Aleksei Sanin","email":"aleksei.sanin@epfl.ch","login":"asanin-epfl","count":2},{"name":"Mizzou Neuro","email":"latimerb@missouri.edu","login":"latimerb","count":1},{"name":"Nicolai Haug","email":"nicolaihaug@yahoo.com","login":"nicolossus","count":1},{"name":"Sergey Gratiy","email":"sergeyg@alleninstitute.org","login":"sgratiy","count":1}],"total_commits":115,"total_committers":13,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":8.846153846153847,"dds":0.6521739130434783,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2024-12-21T12:04:57.284Z","last_synced_commit":"7454a68fba4d33bc79acf03699a4aeca2ebf9ed7","created_at":"2023-03-09T10:05:33.690Z","updated_at":"2024-12-21T12:05:23.766Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"AllenInstitute/sonata","html_url":"https://github.com/AllenInstitute/sonata","last_synced_at":"2025-08-22T20:19:47.619Z","status":"error","issues_count":56,"pull_requests_count":47,"avg_time_to_close_issue":26541079.185185187,"avg_time_to_close_pull_request":7414466.179487179,"issues_closed_count":27,"pull_requests_closed_count":39,"pull_request_authors_count":16,"issue_authors_count":14,"avg_comments_per_issue":4.303571428571429,"avg_comments_per_pull_request":0.574468085106383,"merged_pull_requests_count":35,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-15T00:22:13.359Z","updated_at":"2025-09-01T23:11:13.048Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fsonata/issues","issue_labels_count":{"discussion":7,"question":7,"enhancement":5,"nodes":4,"defect":2,"edges":1,"simulation config":1,"pysonata":1,"postponed":1,"wontfix":1},"pull_request_labels_count":{"dontmerge":1},"issue_author_associations_count":{"CONTRIBUTOR":28,"NONE":16,"COLLABORATOR":12},"pull_request_author_associations_count":{"COLLABORATOR":25,"CONTRIBUTOR":16,"NONE":6},"issue_authors":{"pgleeson":17,"salvadord":9,"hernando":8,"arsenius7":7,"asanin-epfl":3,"kaeldai":2,"wvangeit":2,"Hjorthmedh":2,"chr-pok":1,"SteMasoli":1,"anirban6908":1,"maartensc":1,"alex4200":1,"JY-Gao":1},"pull_request_authors":{"kaeldai":19,"hernando":5,"arsenius7":4,"asanin-epfl":3,"pgleeson":3,"apdavison":3,"MarikeReimer":2,"mgeplf":1,"alex4200":1,"nicolossus":1,"matz-e":1,"alkino":1,"latimerb":1,"joni-herttuainen":1,"wvangeit":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10007873,"issues_count":30095217,"pull_requests_count":88653316,"authors_count":10095420,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"kaeldai","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kaeldai"},{"login":"hernando","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/hernando"},{"login":"wvangeit","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/wvangeit"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":4},"last_year":{"WatchEvent":4}},"keywords":[],"dependencies":[],"score":12.109258835840814,"created_at":"2025-09-08T22:18:48.543Z","updated_at":"2025-10-07T08:31:26.735Z","avatar_url":"https://github.com/AllenInstitute.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":143,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1371/journal.pcbi.1007696"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["neuron","neuroscience","neuroinformatics","computational-neuroscience","electrophysiology"],"project_url":"https://science.ecosyste.ms/api/v1/projects/103979","html_url":"https://science.ecosyste.ms/projects/103979"}