{"id":1204,"name":"High-performance neural population dynamics modeling enabled by scalable computational infrastructure","description":"High-performance neural population dynamics modeling enabled by scalable computational infrastructure - Published in JOSS (2023)","url":"https://github.com/tnel-ucsd/autolfads-deploy","last_synced_at":"2025-09-04T16:20:40.406Z","repository":{"id":62394640,"uuid":"487166818","full_name":"TNEL-UCSD/autolfads-deploy","owner":"TNEL-UCSD","description":"Deployment strategies for AutoLFADS","archived":false,"fork":false,"pushed_at":"2024-03-09T01:01:56.000Z","size":15850,"stargazers_count":14,"open_issues_count":0,"forks_count":2,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-09-04T03:07:00.266Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/TNEL-UCSD.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-04-30T02:55:01.000Z","updated_at":"2025-02-11T02:07:35.000Z","dependencies_parsed_at":"2024-01-17T06:08:38.954Z","dependency_job_id":"a7eecb0e-213a-494f-879b-b595c3322de8","html_url":"https://github.com/TNEL-UCSD/autolfads-deploy","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/TNEL-UCSD/autolfads-deploy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TNEL-UCSD","download_url":"https://codeload.github.com/TNEL-UCSD/autolfads-deploy/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273597960,"owners_count":25134473,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"TNEL-UCSD","name":"TNEL UCSD","uuid":"7026679","kind":"organization","description":"Translational Neuroengineering Lab @ University of California, San Diego","email":null,"website":"https://tnel.ucsd.edu","location":"San Diego, California","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/7026679?v=4","repositories_count":8,"last_synced_at":"2024-05-04T00:21:28.937Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/TNEL-UCSD","funding_links":[],"total_stars":14,"followers":6,"following":0,"created_at":"2022-11-07T20:32:48.902Z","updated_at":"2024-05-04T00:21:30.124Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TNEL-UCSD","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/TNEL-UCSD/repositories"},"packages":[],"commits":{"id":9625099,"full_name":"TNEL-UCSD/autolfads-deploy","default_branch":"master","committers":[{"name":"a9p","email":"58503488+a9p","login":"a9p","count":28},{"name":"SophiaUCSD16","email":"jih201.ucsd@gmail.com","login":"SophiaUCSD16","count":1},{"name":"Andrew Sedler","email":"34044884+arsedler9","login":"arsedler9","count":1}],"total_commits":30,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":10.0,"dds":0.06666666666666665,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T07:54:47.421Z","last_synced_commit":"6f5df4d05eb57495972164028db5a0e87f9b8889","created_at":"2025-04-11T11:06:16.715Z","updated_at":"2025-08-07T07:54:49.378Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"TNEL-UCSD/autolfads-deploy","html_url":"https://github.com/TNEL-UCSD/autolfads-deploy","last_synced_at":"2025-08-31T21:13:04.357Z","status":"error","issues_count":7,"pull_requests_count":19,"avg_time_to_close_issue":2188978.0,"avg_time_to_close_pull_request":421387.2105263158,"issues_closed_count":7,"pull_requests_closed_count":19,"pull_request_authors_count":4,"issue_authors_count":2,"avg_comments_per_issue":0.14285714285714285,"avg_comments_per_pull_request":0.3684210526315789,"merged_pull_requests_count":18,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-04T00:20:58.232Z","updated_at":"2025-09-01T05:03:13.651Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/TNEL-UCSD%2Fautolfads-deploy/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":7},"pull_request_author_associations_count":{"MEMBER":18,"COLLABORATOR":2},"issue_authors":{"richford":4,"tachukao":3},"pull_request_authors":{"a9p":17,"SophiaUCSD16":1,"compwizk":1,"arsedler9":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9910739,"issues_count":29196719,"pull_requests_count":83823820,"authors_count":8971776,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"a9p","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/a9p"},{"login":"compwizk","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/compwizk"},{"login":"arsedler9","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/arsedler9"},{"login":"SophiaUCSD16","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/SophiaUCSD16"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"kubeflow/roles/kubeflow/files/kubeflow/manifests/apps/kfp-tekton/upstream/base/installs/multi-user/pipelines-profile-controller/requirements-dev.txt","sha":null,"kind":"manifest","created_at":"2022-11-01T05:15:30.351Z","updated_at":"2022-11-01T05:15:30.351Z","repository_link":"https://github.com/TNEL-UCSD/autolfads-deploy/blob/master/kubeflow/roles/kubeflow/files/kubeflow/manifests/apps/kfp-tekton/upstream/base/installs/multi-user/pipelines-profile-controller/requirements-dev.txt","dependencies":[{"id":6569552670,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":6569552671,"package_name":"pytest-lazy-fixture","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":6569552672,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false}]},{"ecosystem":"pypi","filepath":"kubeflow/roles/kubeflow/files/kubeflow/manifests/apps/pipeline/upstream/base/installs/multi-user/pipelines-profile-controller/requirements-dev.txt","sha":null,"kind":"manifest","created_at":"2022-11-01T05:15:30.414Z","updated_at":"2022-11-01T05:15:30.414Z","repository_link":"https://github.com/TNEL-UCSD/autolfads-deploy/blob/master/kubeflow/roles/kubeflow/files/kubeflow/manifests/apps/pipeline/upstream/base/installs/multi-user/pipelines-profile-controller/requirements-dev.txt","dependencies":[{"id":6569554885,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":6569554886,"package_name":"pytest-lazy-fixture","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false},{"id":6569554887,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"development","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/model-test.yml","sha":null,"kind":"manifest","created_at":"2024-01-17T06:08:38.812Z","updated_at":"2024-01-17T06:08:38.812Z","repository_link":"https://github.com/TNEL-UCSD/autolfads-deploy/blob/master/.github/workflows/model-test.yml","dependencies":[{"id":15658948223,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]}],"score":3.737669618283368,"created_at":"2025-09-04T09:17:45.040Z","updated_at":"2025-10-07T08:04:30.802Z","avatar_url":"https://github.com/TNEL-UCSD.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.05023"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/1204","html_url":"https://science.ecosyste.ms/projects/1204","bibtex_url":"https://science.ecosyste.ms/projects/1204/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/1204/export.apalike"}