{"id":13172,"name":"variant_infections_rate","description":"Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'","url":"https://github.com/rafalopespx/variant_infections_rate","last_synced_at":"2025-09-04T22:00:36.343Z","repository":{"id":204486896,"uuid":"624489222","full_name":"rafalopespx/Variant_infections_rate","owner":"rafalopespx","description":"Repository with codes to the paper 'Combining genomic data and infection estimates to characterize the complex dynamics of SARS-CoV-2 Omicron variants in the United States'","archived":false,"fork":false,"pushed_at":"2024-09-13T21:10:52.000Z","size":586180,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-12T00:44:52.305Z","etag":null,"topics":["epidemiology","genomics","gisaid","modeling","unite","variants"],"latest_commit_sha":null,"homepage":"https://www.cell.com/cell-reports/fulltext/S2211-1247(24)00780-0","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/rafalopespx.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-04-06T15:23:53.000Z","updated_at":"2024-09-13T21:10:58.000Z","dependencies_parsed_at":"2025-04-12T00:54:55.375Z","dependency_job_id":null,"html_url":"https://github.com/rafalopespx/Variant_infections_rate","commit_stats":null,"previous_names":["rafalopespx/variant_infections_rate"],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/rafalopespx/Variant_infections_rate","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2FVariant_infections_rate","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2FVariant_infections_rate/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2FVariant_infections_rate/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2FVariant_infections_rate/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rafalopespx","download_url":"https://codeload.github.com/rafalopespx/Variant_infections_rate/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2FVariant_infections_rate/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273679590,"owners_count":25148628,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"rafalopespx","name":"Rafa Lopes","uuid":"29614586","kind":"user","description":"Interested in the dynamics and its signatures on the time series variability on epidemics\r\n\r\nWorking on DENV, CHIKV, ZIKV, and climate change","email":"","website":"rafalopespx.github.io","location":"USA","twitter":null,"company":"Yale University, Yale School Of Public Health","icon_url":"https://avatars.githubusercontent.com/u/29614586?u=e82a321a8943580dfc2dd0e933074d1a174176a3\u0026v=4","repositories_count":59,"last_synced_at":"2025-08-28T07:02:41.992Z","metadata":{"has_sponsors_listing":true},"html_url":"https://github.com/rafalopespx","funding_links":["https://github.com/sponsors/rafalopespx"],"total_stars":13,"followers":96,"following":474,"created_at":"2023-08-11T03:19:21.709Z","updated_at":"2025-08-28T07:02:41.992Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rafalopespx","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/rafalopespx/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"rafalopespx/variant_infections_rate","html_url":"https://github.com/rafalopespx/variant_infections_rate","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-04T21:59:18.676Z","updated_at":"2025-09-04T21:59:18.676Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2Fvariant_infections_rate","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/rafalopespx%2Fvariant_infections_rate/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10082573,"issues_count":31281971,"pull_requests_count":96192905,"authors_count":10694127,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["epidemiology","genomics","gisaid","modeling","unite","variants"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:50:43.396Z","updated_at":"2025-10-07T08:07:41.655Z","avatar_url":"https://github.com/rafalopespx.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.55876/gis8.231023hd"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/13172","html_url":"https://science.ecosyste.ms/projects/13172"}