{"id":1356,"name":"MSMetaEnhancer","description":"MSMetaEnhancer: A Python package for mass spectra metadata annotation - Published in JOSS (2022)","url":"https://github.com/recetox/msmetaenhancer","last_synced_at":"2025-09-04T16:26:54.463Z","repository":{"id":37393488,"uuid":"375003705","full_name":"RECETOX/MSMetaEnhancer","owner":"RECETOX","description":"Tool for mass spectra metadata annotation.","archived":false,"fork":false,"pushed_at":"2025-06-25T12:44:28.000Z","size":748,"stargazers_count":8,"open_issues_count":7,"forks_count":10,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-09-04T03:06:06.843Z","etag":null,"topics":["annotations","hacktoberfest","mass-spectrometry","python","usegalaxy"],"latest_commit_sha":null,"homepage":"https://msmetaenhancer.readthedocs.io/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/RECETOX.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-06-08T12:37:09.000Z","updated_at":"2025-08-25T16:59:08.000Z","dependencies_parsed_at":"2025-06-16T01:44:17.369Z","dependency_job_id":"bd9e996b-c9bc-47f3-8290-3ec6655a63f0","html_url":"https://github.com/RECETOX/MSMetaEnhancer","commit_stats":null,"previous_names":[],"tags_count":13,"template":false,"template_full_name":null,"purl":"pkg:github/RECETOX/MSMetaEnhancer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RECETOX","download_url":"https://codeload.github.com/RECETOX/MSMetaEnhancer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273599268,"owners_count":25134784,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"RECETOX","name":"RECETOX","uuid":"69039108","kind":"organization","description":"At RECETOX we are engaged in research and education in the management of environmental and health risks associated with the chemicals around us.","email":null,"website":"https://www.recetox.muni.cz/","location":"Brno, Czechia","twitter":"RECETOX","company":null,"icon_url":"https://avatars.githubusercontent.com/u/69039108?v=4","repositories_count":17,"last_synced_at":"2023-03-04T04:38:59.410Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/RECETOX","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T09:40:20.778Z","updated_at":"2023-03-04T04:38:59.508Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RECETOX","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RECETOX/repositories"},"packages":[],"commits":{"id":9625152,"full_name":"RECETOX/MSMetaEnhancer","default_branch":"main","committers":[{"name":"Matej Trojak","email":"trojak@mail.muni.cz","login":"xtrojak","count":297},{"name":"hechth","email":"helge.hecht@recetox.muni.cz","login":"hechth","count":83},{"name":"maximskorik","email":"maximskoryk@gmail.com","login":"maximskorik","count":21},{"name":"acquayefrank","email":"acquayefrank@gmail.com","login":"acquayefrank","count":9},{"name":"Martin Cech","email":"marten@bx.psu.edu","login":"martenson","count":8},{"name":"Egon Willighagen","email":"egon.willighagen@gmail.com","login":"egonw","count":1},{"name":"Charlotte Soneson","email":"charlottesoneson@gmail.com","login":"csoneson","count":1},{"name":"Jakub Galgonek","email":"jakub.galgonek@uochb.cas.cz","login":null,"count":1}],"total_commits":421,"total_committers":8,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":52.625,"dds":0.29453681710213775,"past_year_committers":[{"name":"acquayefrank","email":"acquayefrank@gmail.com","login":"acquayefrank","count":9},{"name":"hechth","email":"helge.hecht@recetox.muni.cz","login":"hechth","count":1}],"past_year_total_commits":10,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.0,"past_year_dds":0.09999999999999998,"last_synced_at":"2025-08-07T07:51:38.421Z","last_synced_commit":"5eac8c91f685283670899c4f6189683a1a18f924","created_at":"2025-04-11T11:10:57.113Z","updated_at":"2025-08-07T07:51:42.087Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"RECETOX/MSMetaEnhancer","html_url":"https://github.com/RECETOX/MSMetaEnhancer","last_synced_at":"2025-08-31T21:05:47.194Z","status":"error","issues_count":58,"pull_requests_count":56,"avg_time_to_close_issue":5322040.037735849,"avg_time_to_close_pull_request":632997.1428571428,"issues_closed_count":53,"pull_requests_closed_count":56,"pull_request_authors_count":8,"issue_authors_count":7,"avg_comments_per_issue":0.9655172413793104,"avg_comments_per_pull_request":0.625,"merged_pull_requests_count":55,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":5,"past_year_pull_requests_count":3,"past_year_avg_time_to_close_issue":1923122.3333333333,"past_year_avg_time_to_close_pull_request":1095439.6666666667,"past_year_issues_closed_count":3,"past_year_pull_requests_closed_count":3,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2023-05-15T03:25:50.773Z","updated_at":"2025-09-01T06:38:07.160Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/RECETOX%2FMSMetaEnhancer/issues","issue_labels_count":{"bug":4,"wontfix":1,"documentation":1,"enhancement":1},"pull_request_labels_count":{"bug":2,"documentation":1},"issue_author_associations_count":{"MEMBER":33,"COLLABORATOR":18,"NONE":5,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"COLLABORATOR":33,"MEMBER":18,"CONTRIBUTOR":4,"NONE":3},"issue_authors":{"hechth":30,"xtrojak":18,"martenson":3,"marshallmcdonnell":3,"chryswoods":2,"egonw":1,"acquayefrank":1},"pull_request_authors":{"xtrojak":33,"hechth":10,"maximskorik":5,"martenson":3,"acquayefrank":3,"galgonek":2,"egonw":1,"csoneson":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10042729,"issues_count":30645220,"pull_requests_count":91402388,"authors_count":10443886,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"MEMBER":5,"CONTRIBUTOR":1},"past_year_pull_request_author_associations_count":{"MEMBER":2,"CONTRIBUTOR":2,"NONE":1},"past_year_issue_authors":{"hechth":5,"acquayefrank":1},"past_year_pull_request_authors":{"acquayefrank":3,"hechth":2},"maintainers":[{"login":"xtrojak","count":51,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/xtrojak"},{"login":"hechth","count":40,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/hechth"},{"login":"martenson","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/martenson"},{"login":"maximskorik","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/maximskorik"}],"active_maintainers":[{"login":"hechth","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/hechth"}]},"events":{"total":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":7,"IssueCommentEvent":1,"MemberEvent":4,"PushEvent":2,"PullRequestEvent":3,"PullRequestReviewEvent":11,"PullRequestReviewCommentEvent":5,"ForkEvent":2},"last_year":{"CreateEvent":2,"ReleaseEvent":1,"IssuesEvent":7,"IssueCommentEvent":1,"MemberEvent":4,"PushEvent":2,"PullRequestEvent":3,"PullRequestReviewEvent":11,"PullRequestReviewCommentEvent":5,"ForkEvent":2}},"keywords":["annotations","hacktoberfest","mass-spectrometry","python","usegalaxy"],"dependencies":[{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-03-13T15:49:06.975Z","updated_at":"2024-03-13T15:49:06.975Z","repository_link":"https://github.com/RECETOX/MSMetaEnhancer/blob/main/pyproject.toml","dependencies":[{"id":16794135740,"package_name":"python","ecosystem":"pypi","requirements":"\u003e=3.9,\u003c3.13","direct":true,"kind":"runtime","optional":false},{"id":16794135741,"package_name":"matchms","ecosystem":"pypi","requirements":"^0.14","direct":true,"kind":"runtime","optional":false},{"id":16794135839,"package_name":"pandas","ecosystem":"pypi","requirements":"^2.2.1","direct":true,"kind":"runtime","optional":false},{"id":16794135840,"package_name":"scipy","ecosystem":"pypi","requirements":"^1.12.0","direct":true,"kind":"runtime","optional":false},{"id":16794135841,"package_name":"requests","ecosystem":"pypi","requirements":"^2.31.0","direct":true,"kind":"runtime","optional":false},{"id":16794135842,"package_name":"aiohttp","ecosystem":"pypi","requirements":"^3.9.3","direct":true,"kind":"runtime","optional":false},{"id":16794135843,"package_name":"asyncstdlib","ecosystem":"pypi","requirements":"^3.12.0","direct":true,"kind":"runtime","optional":false},{"id":16794137549,"package_name":"frozendict","ecosystem":"pypi","requirements":"^2.4.0","direct":true,"kind":"runtime","optional":false},{"id":16794137550,"package_name":"twine","ecosystem":"pypi","requirements":"^5.0.0","direct":true,"kind":"runtime","optional":false},{"id":16794137551,"package_name":"tabulate","ecosystem":"pypi","requirements":"^0.9.0","direct":true,"kind":"runtime","optional":false},{"id":16794137552,"package_name":"rdkit","ecosystem":"pypi","requirements":"^2023.9.5","direct":true,"kind":"runtime","optional":false},{"id":16794137553,"package_name":"multidict","ecosystem":"pypi","requirements":"^6.0.5","direct":true,"kind":"runtime","optional":false},{"id":16794137554,"package_name":"aiocircuitbreaker","ecosystem":"pypi","requirements":"^2.0.0","direct":true,"kind":"runtime","optional":false},{"id":16794138630,"package_name":"openpyxl","ecosystem":"pypi","requirements":"^3.1.2","direct":true,"kind":"runtime","optional":false},{"id":16794138631,"package_name":"mock","ecosystem":"pypi","requirements":"^5.1.0","direct":true,"kind":"develop","optional":false},{"id":16794138632,"package_name":"pytest","ecosystem":"pypi","requirements":"^8.0.2","direct":true,"kind":"develop","optional":false},{"id":16794138633,"package_name":"pytest-cov","ecosystem":"pypi","requirements":"^4.1.0","direct":true,"kind":"develop","optional":false},{"id":16794138634,"package_name":"pytest-aiohttp","ecosystem":"pypi","requirements":"^1.0.5","direct":true,"kind":"develop","optional":false},{"id":16794138635,"package_name":"pytest-dependency","ecosystem":"pypi","requirements":"^0.6.0","direct":true,"kind":"develop","optional":false},{"id":16794141375,"package_name":"myst-parser","ecosystem":"pypi","requirements":"^2.0.0","direct":true,"kind":"develop","optional":false},{"id":16794141376,"package_name":"flake8","ecosystem":"pypi","requirements":"^7.0.0","direct":true,"kind":"develop","optional":false},{"id":16794141377,"package_name":"sphinx","ecosystem":"pypi","requirements":"^7.2.6","direct":true,"kind":"docs","optional":false},{"id":16794141378,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"^2.0.0","direct":true,"kind":"docs","optional":false},{"id":16794141379,"package_name":"readthedocs-sphinx-ext","ecosystem":"pypi","requirements":"^2.2.5","direct":true,"kind":"docs","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/codeql-analysis.yml","sha":null,"kind":"manifest","created_at":"2024-02-29T17:52:32.320Z","updated_at":"2024-02-29T17:52:32.320Z","repository_link":"https://github.com/RECETOX/MSMetaEnhancer/blob/main/.github/workflows/codeql-analysis.yml","dependencies":[{"id":16523950962,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16523950963,"package_name":"github/codeql-action/init","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16523950964,"package_name":"github/codeql-action/analyze","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/project_automation.yml","sha":null,"kind":"manifest","created_at":"2024-02-29T17:52:32.475Z","updated_at":"2024-02-29T17:52:32.475Z","repository_link":"https://github.com/RECETOX/MSMetaEnhancer/blob/main/.github/workflows/project_automation.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/publish_pypi.yaml","sha":null,"kind":"manifest","created_at":"2024-02-29T17:52:33.327Z","updated_at":"2024-02-29T17:52:33.327Z","repository_link":"https://github.com/RECETOX/MSMetaEnhancer/blob/main/.github/workflows/publish_pypi.yaml","dependencies":[{"id":16523951420,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16523951421,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16523951422,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1.5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-package.yml","sha":null,"kind":"manifest","created_at":"2024-02-29T17:52:33.411Z","updated_at":"2024-02-29T17:52:33.411Z","repository_link":"https://github.com/RECETOX/MSMetaEnhancer/blob/main/.github/workflows/test-package.yml","dependencies":[{"id":16523951423,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":16523951424,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":4.787491742782046,"created_at":"2025-09-04T09:17:46.898Z","updated_at":"2025-10-07T08:04:31.673Z","avatar_url":"https://github.com/RECETOX.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.04494"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["gass-chromatography","fuzzy-matching","fuzzy-search","metabolomics","similarity-measures"],"project_url":"https://science.ecosyste.ms/api/v1/projects/1356","html_url":"https://science.ecosyste.ms/projects/1356"}