{"id":137144,"name":null,"description":"Application of Geneformer for Network Medicine","url":"https://github.com/barabasi-lab/geneformer-networkmedicine","last_synced_at":"2025-09-09T12:42:36.375Z","repository":{"id":261844834,"uuid":"719819909","full_name":"Barabasi-Lab/Geneformer-NetworkMedicine","owner":"Barabasi-Lab","description":"Application of Geneformer for Network Medicine","archived":false,"fork":false,"pushed_at":"2024-11-08T18:21:08.000Z","size":66971,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"main","last_synced_at":"2024-11-08T19:26:55.648Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Barabasi-Lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-11-17T00:55:53.000Z","updated_at":"2024-11-08T18:21:12.000Z","dependencies_parsed_at":"2024-11-08T19:27:11.179Z","dependency_job_id":"c42be1be-6af2-41e2-b778-43c3290099f6","html_url":"https://github.com/Barabasi-Lab/Geneformer-NetworkMedicine","commit_stats":null,"previous_names":["barabasi-lab/geneformer-networkmedicine"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Barabasi-Lab/Geneformer-NetworkMedicine","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Barabasi-Lab%2FGeneformer-NetworkMedicine","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Barabasi-Lab%2FGeneformer-NetworkMedicine/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Barabasi-Lab%2FGeneformer-NetworkMedicine/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Barabasi-Lab%2FGeneformer-NetworkMedicine/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Barabasi-Lab","download_url":"https://codeload.github.com/Barabasi-Lab/Geneformer-NetworkMedicine/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Barabasi-Lab%2FGeneformer-NetworkMedicine/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274296644,"owners_count":25258889,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Barabasi-Lab","name":"Barabasi Lab","uuid":"79589560","kind":"organization","description":"","email":null,"website":"https://www.barabasilab.com/","location":"Boston, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/79589560?v=4","repositories_count":10,"last_synced_at":"2023-05-01T15:50:22.908Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Barabasi-Lab","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-02-20T17:50:59.031Z","updated_at":"2023-05-01T15:50:22.926Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Barabasi-Lab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Barabasi-Lab/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"barabasi-lab/geneformer-networkmedicine","html_url":"https://github.com/barabasi-lab/geneformer-networkmedicine","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-09T12:42:23.103Z","updated_at":"2025-09-09T12:42:23.103Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/barabasi-lab%2Fgeneformer-networkmedicine","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/barabasi-lab%2Fgeneformer-networkmedicine/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10182778,"issues_count":32029690,"pull_requests_count":100720980,"authors_count":10737440,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1,"PushEvent":2,"PublicEvent":1},"last_year":{"WatchEvent":1,"PushEvent":2,"PublicEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-11-08T19:26:58.393Z","updated_at":"2024-11-08T19:26:58.393Z","repository_link":"https://github.com/Barabasi-Lab/Geneformer-NetworkMedicine/blob/main/requirements.txt","dependencies":[{"id":20633912585,"package_name":"accelerate","ecosystem":"pypi","requirements":"==0.29.3","direct":true,"kind":"runtime","optional":false},{"id":20633912586,"package_name":"accumulation-tree","ecosystem":"pypi","requirements":"==0.6.2","direct":true,"kind":"runtime","optional":false},{"id":20633912587,"package_name":"aiohttp","ecosystem":"pypi","requirements":"==3.9.3","direct":true,"kind":"runtime","optional":false},{"id":20633912588,"package_name":"aiohttp-cors","ecosystem":"pypi","requirements":"==0.7.0","direct":true,"kind":"runtime","optional":false},{"id":20633912597,"package_name":"aiorwlock","ecosystem":"pypi","requirements":"==1.4.0","direct":true,"kind":"runtime","optional":false},{"id":20633912598,"package_name":"aiosignal","ecosystem":"pypi","requirements":"==1.3.1","direct":true,"kind":"runtime","optional":false},{"id":20633912599,"package_name":"anndata","ecosystem":"pypi","requirements":"==0.10.5.post1","direct":true,"kind":"runtime","optional":false},{"id":20633912630,"package_name":"annotated-types","ecosystem":"pypi","requirements":"==0.6.0","direct":true,"kind":"runtime","optional":false},{"id":20633912631,"package_name":"anyio","ecosystem":"pypi","requirements":"==4.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633912632,"package_name":"argon2-cffi","ecosystem":"pypi","requirements":"==23.1.0","direct":true,"kind":"runtime","optional":false},{"id":20633912633,"package_name":"argon2-cffi-bindings","ecosystem":"pypi","requirements":"==21.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633912634,"package_name":"array_api_compat","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":20633912999,"package_name":"arrow","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633913000,"package_name":"async-lru","ecosystem":"pypi","requirements":"==2.0.4","direct":true,"kind":"runtime","optional":false},{"id":20633913001,"package_name":"attrs","ecosystem":"pypi","requirements":"==23.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633913002,"package_name":"Babel","ecosystem":"pypi","requirements":"==2.14.0","direct":true,"kind":"runtime","optional":false},{"id":20633913003,"package_name":"beautifulsoup4","ecosystem":"pypi","requirements":"==4.12.3","direct":true,"kind":"runtime","optional":false},{"id":20633913004,"package_name":"bleach","ecosystem":"pypi","requirements":"==6.1.0","direct":true,"kind":"runtime","optional":false},{"id":20633913005,"package_name":"blessed","ecosystem":"pypi","requirements":"==1.20.0","direct":true,"kind":"runtime","optional":false},{"id":20633913006,"package_name":"bokeh","ecosystem":"pypi","requirements":"==3.5.2","direct":true,"kind":"runtime","optional":false},{"id":20633913007,"package_name":"cachetools","ecosystem":"pypi","requirements":"==5.3.2","direct":true,"kind":"runtime","optional":false},{"id":20633913008,"package_name":"certifi","ecosystem":"pypi","requirements":"==2024.2.2","direct":true,"kind":"runtime","optional":false},{"id":20633913009,"package_name":"cffi","ecosystem":"pypi","requirements":"==1.16.0","direct":true,"kind":"runtime","optional":false},{"id":20633913010,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"==3.3.2","direct":true,"kind":"runtime","optional":false},{"id":20633913011,"package_name":"click","ecosystem":"pypi","requirements":"==8.1.7","direct":true,"kind":"runtime","optional":false},{"id":20633913012,"package_name":"cloudpickle","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633913013,"package_name":"colorful","ecosystem":"pypi","requirements":"==0.5.6","direct":true,"kind":"runtime","optional":false},{"id":20633913014,"package_name":"contourpy","ecosystem":"pypi","requirements":"==1.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633913015,"package_name":"cycler","ecosystem":"pypi","requirements":"==0.12.1","direct":true,"kind":"runtime","optional":false},{"id":20633913016,"package_name":"dask","ecosystem":"pypi","requirements":"==2024.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633913017,"package_name":"dask-expr","ecosystem":"pypi","requirements":"==1.1.14","direct":true,"kind":"runtime","optional":false},{"id":20633913018,"package_name":"datasets","ecosystem":"pypi","requirements":"==2.17.0","direct":true,"kind":"runtime","optional":false},{"id":20633913019,"package_name":"defusedxml","ecosystem":"pypi","requirements":"==0.7.1","direct":true,"kind":"runtime","optional":false},{"id":20633913020,"package_name":"dill","ecosystem":"pypi","requirements":"==0.3.8","direct":true,"kind":"runtime","optional":false},{"id":20633913021,"package_name":"distlib","ecosystem":"pypi","requirements":"==0.3.8","direct":true,"kind":"runtime","optional":false},{"id":20633913022,"package_name":"distributed","ecosystem":"pypi","requirements":"==2024.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633913023,"package_name":"et-xmlfile","ecosystem":"pypi","requirements":"==1.1.0","direct":true,"kind":"runtime","optional":false},{"id":20633913024,"package_name":"fastapi","ecosystem":"pypi","requirements":"==0.108.0","direct":true,"kind":"runtime","optional":false},{"id":20633913025,"package_name":"fastjsonschema","ecosystem":"pypi","requirements":"==2.19.1","direct":true,"kind":"runtime","optional":false},{"id":20633913026,"package_name":"filelock","ecosystem":"pypi","requirements":"==3.13.1","direct":true,"kind":"runtime","optional":false},{"id":20633913027,"package_name":"fonttools","ecosystem":"pypi","requirements":"==4.49.0","direct":true,"kind":"runtime","optional":false},{"id":20633913028,"package_name":"fqdn","ecosystem":"pypi","requirements":"==1.5.1","direct":true,"kind":"runtime","optional":false},{"id":20633913029,"package_name":"frozenlist","ecosystem":"pypi","requirements":"==1.4.1","direct":true,"kind":"runtime","optional":false},{"id":20633913030,"package_name":"fsspec","ecosystem":"pypi","requirements":"==2023.10.0","direct":true,"kind":"runtime","optional":false},{"id":20633913031,"package_name":"GEOparse","ecosystem":"pypi","requirements":"==2.0.3","direct":true,"kind":"runtime","optional":false},{"id":20633913032,"package_name":"google-api-core","ecosystem":"pypi","requirements":"==2.17.1","direct":true,"kind":"runtime","optional":false},{"id":20633913033,"package_name":"google-auth","ecosystem":"pypi","requirements":"==2.28.0","direct":true,"kind":"runtime","optional":false},{"id":20633913034,"package_name":"googleapis-common-protos","ecosystem":"pypi","requirements":"==1.62.0","direct":true,"kind":"runtime","optional":false},{"id":20633913035,"package_name":"gprofiler-official","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633913036,"package_name":"gpustat","ecosystem":"pypi","requirements":"==1.1.1","direct":true,"kind":"runtime","optional":false},{"id":20633913443,"package_name":"grpcio","ecosystem":"pypi","requirements":"==1.60.1","direct":true,"kind":"runtime","optional":false},{"id":20633913444,"package_name":"h11","ecosystem":"pypi","requirements":"==0.14.0","direct":true,"kind":"runtime","optional":false},{"id":20633913445,"package_name":"h5py","ecosystem":"pypi","requirements":"==3.10.0","direct":true,"kind":"runtime","optional":false},{"id":20633913446,"package_name":"httpcore","ecosystem":"pypi","requirements":"==1.0.4","direct":true,"kind":"runtime","optional":false},{"id":20633913447,"package_name":"httptools","ecosystem":"pypi","requirements":"==0.6.1","direct":true,"kind":"runtime","optional":false},{"id":20633913448,"package_name":"httpx","ecosystem":"pypi","requirements":"==0.27.0","direct":true,"kind":"runtime","optional":false},{"id":20633913449,"package_name":"huggingface-hub","ecosystem":"pypi","requirements":"==0.20.3","direct":true,"kind":"runtime","optional":false},{"id":20633913450,"package_name":"idna","ecosystem":"pypi","requirements":"==3.6","direct":true,"kind":"runtime","optional":false},{"id":20633913451,"package_name":"imbalanced-learn","ecosystem":"pypi","requirements":"==0.12.2","direct":true,"kind":"runtime","optional":false},{"id":20633913452,"package_name":"importlib_metadata","ecosystem":"pypi","requirements":"==8.5.0","direct":true,"kind":"runtime","optional":false},{"id":20633913453,"package_name":"isoduration","ecosystem":"pypi","requirements":"==20.11.0","direct":true,"kind":"runtime","optional":false},{"id":20633913454,"package_name":"Jinja2","ecosystem":"pypi","requirements":"==3.1.3","direct":true,"kind":"runtime","optional":false},{"id":20633913455,"package_name":"joblib","ecosystem":"pypi","requirements":"==1.3.2","direct":true,"kind":"runtime","optional":false},{"id":20633913456,"package_name":"json5","ecosystem":"pypi","requirements":"==0.9.20","direct":true,"kind":"runtime","optional":false},{"id":20633913457,"package_name":"jsonpointer","ecosystem":"pypi","requirements":"==2.4","direct":true,"kind":"runtime","optional":false},{"id":20633913458,"package_name":"jsonschema","ecosystem":"pypi","requirements":"==4.21.1","direct":true,"kind":"runtime","optional":false},{"id":20633913459,"package_name":"jsonschema-specifications","ecosystem":"pypi","requirements":"==2023.12.1","direct":true,"kind":"runtime","optional":false},{"id":20633913460,"package_name":"jupyter-events","ecosystem":"pypi","requirements":"==0.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633913461,"package_name":"jupyter-lsp","ecosystem":"pypi","requirements":"==2.2.3","direct":true,"kind":"runtime","optional":false},{"id":20633913462,"package_name":"jupyter_server","ecosystem":"pypi","requirements":"==2.13.0","direct":true,"kind":"runtime","optional":false},{"id":20633913463,"package_name":"jupyter_server_terminals","ecosystem":"pypi","requirements":"==0.5.2","direct":true,"kind":"runtime","optional":false},{"id":20633913464,"package_name":"jupyterlab","ecosystem":"pypi","requirements":"==4.1.2","direct":true,"kind":"runtime","optional":false},{"id":20633913465,"package_name":"jupyterlab_pygments","ecosystem":"pypi","requirements":"==0.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633913466,"package_name":"jupyterlab_server","ecosystem":"pypi","requirements":"==2.25.3","direct":true,"kind":"runtime","optional":false},{"id":20633913467,"package_name":"kiwisolver","ecosystem":"pypi","requirements":"==1.4.5","direct":true,"kind":"runtime","optional":false},{"id":20633913468,"package_name":"llvmlite","ecosystem":"pypi","requirements":"==0.42.0","direct":true,"kind":"runtime","optional":false},{"id":20633913469,"package_name":"locket","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633913470,"package_name":"loompy","ecosystem":"pypi","requirements":"==3.0.7","direct":true,"kind":"runtime","optional":false},{"id":20633913743,"package_name":"lz4","ecosystem":"pypi","requirements":"==4.3.3","direct":true,"kind":"runtime","optional":false},{"id":20633913744,"package_name":"MarkupSafe","ecosystem":"pypi","requirements":"==2.1.5","direct":true,"kind":"runtime","optional":false},{"id":20633913745,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.8.3","direct":true,"kind":"runtime","optional":false},{"id":20633913746,"package_name":"mistune","ecosystem":"pypi","requirements":"==3.0.2","direct":true,"kind":"runtime","optional":false},{"id":20633913747,"package_name":"mkl-service","ecosystem":"pypi","requirements":"==2.4.0","direct":true,"kind":"runtime","optional":false},{"id":20633913748,"package_name":"mpmath","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633913749,"package_name":"msgpack","ecosystem":"pypi","requirements":"==1.0.7","direct":true,"kind":"runtime","optional":false},{"id":20633913750,"package_name":"multidict","ecosystem":"pypi","requirements":"==6.0.5","direct":true,"kind":"runtime","optional":false},{"id":20633913751,"package_name":"multiprocess","ecosystem":"pypi","requirements":"==0.70.16","direct":true,"kind":"runtime","optional":false},{"id":20633913752,"package_name":"natsort","ecosystem":"pypi","requirements":"==8.4.0","direct":true,"kind":"runtime","optional":false},{"id":20633913753,"package_name":"nbclient","ecosystem":"pypi","requirements":"==0.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633913754,"package_name":"nbconvert","ecosystem":"pypi","requirements":"==7.16.1","direct":true,"kind":"runtime","optional":false},{"id":20633913755,"package_name":"nbformat","ecosystem":"pypi","requirements":"==5.9.2","direct":true,"kind":"runtime","optional":false},{"id":20633913756,"package_name":"netmedpy","ecosystem":"pypi","requirements":"==0.1.3","direct":true,"kind":"runtime","optional":false},{"id":20633913757,"package_name":"networkx","ecosystem":"pypi","requirements":"==3.2.1","direct":true,"kind":"runtime","optional":false},{"id":20633913758,"package_name":"notebook_shim","ecosystem":"pypi","requirements":"==0.2.4","direct":true,"kind":"runtime","optional":false},{"id":20633913759,"package_name":"numba","ecosystem":"pypi","requirements":"==0.59.0","direct":true,"kind":"runtime","optional":false},{"id":20633913760,"package_name":"numpy-groupies","ecosystem":"pypi","requirements":"==0.10.2","direct":true,"kind":"runtime","optional":false},{"id":20633913876,"package_name":"nvidia-cublas-cu12","ecosystem":"pypi","requirements":"==12.1.3.1","direct":true,"kind":"runtime","optional":false},{"id":20633913877,"package_name":"nvidia-cuda-cupti-cu12","ecosystem":"pypi","requirements":"==12.1.105","direct":true,"kind":"runtime","optional":false},{"id":20633913878,"package_name":"nvidia-cuda-nvrtc-cu12","ecosystem":"pypi","requirements":"==12.1.105","direct":true,"kind":"runtime","optional":false},{"id":20633913879,"package_name":"nvidia-cuda-runtime-cu12","ecosystem":"pypi","requirements":"==12.1.105","direct":true,"kind":"runtime","optional":false},{"id":20633913880,"package_name":"nvidia-cudnn-cu12","ecosystem":"pypi","requirements":"==8.9.2.26","direct":true,"kind":"runtime","optional":false},{"id":20633913881,"package_name":"nvidia-cufft-cu12","ecosystem":"pypi","requirements":"==11.0.2.54","direct":true,"kind":"runtime","optional":false},{"id":20633913882,"package_name":"nvidia-curand-cu12","ecosystem":"pypi","requirements":"==10.3.2.106","direct":true,"kind":"runtime","optional":false},{"id":20633913883,"package_name":"nvidia-cusolver-cu12","ecosystem":"pypi","requirements":"==11.4.5.107","direct":true,"kind":"runtime","optional":false},{"id":20633913884,"package_name":"nvidia-cusparse-cu12","ecosystem":"pypi","requirements":"==12.1.0.106","direct":true,"kind":"runtime","optional":false},{"id":20633913885,"package_name":"nvidia-ml-py","ecosystem":"pypi","requirements":"==12.535.133","direct":true,"kind":"runtime","optional":false},{"id":20633913993,"package_name":"nvidia-nccl-cu12","ecosystem":"pypi","requirements":"==2.19.3","direct":true,"kind":"runtime","optional":false},{"id":20633913994,"package_name":"nvidia-nvjitlink-cu12","ecosystem":"pypi","requirements":"==12.3.101","direct":true,"kind":"runtime","optional":false},{"id":20633913995,"package_name":"nvidia-nvtx-cu12","ecosystem":"pypi","requirements":"==12.1.105","direct":true,"kind":"runtime","optional":false},{"id":20633913996,"package_name":"opencensus","ecosystem":"pypi","requirements":"==0.11.4","direct":true,"kind":"runtime","optional":false},{"id":20633914024,"package_name":"opencensus-context","ecosystem":"pypi","requirements":"==0.1.3","direct":true,"kind":"runtime","optional":false},{"id":20633914055,"package_name":"openpyxl","ecosystem":"pypi","requirements":"==3.1.2","direct":true,"kind":"runtime","optional":false},{"id":20633914056,"package_name":"overrides","ecosystem":"pypi","requirements":"==7.7.0","direct":true,"kind":"runtime","optional":false},{"id":20633914057,"package_name":"pandocfilters","ecosystem":"pypi","requirements":"==1.5.1","direct":true,"kind":"runtime","optional":false},{"id":20633914058,"package_name":"partd","ecosystem":"pypi","requirements":"==1.4.2","direct":true,"kind":"runtime","optional":false},{"id":20633914059,"package_name":"patsy","ecosystem":"pypi","requirements":"==0.5.6","direct":true,"kind":"runtime","optional":false},{"id":20633914060,"package_name":"pillow","ecosystem":"pypi","requirements":"==10.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633914061,"package_name":"polars","ecosystem":"pypi","requirements":"==0.20.8","direct":true,"kind":"runtime","optional":false},{"id":20633914062,"package_name":"prometheus_client","ecosystem":"pypi","requirements":"==0.20.0","direct":true,"kind":"runtime","optional":false},{"id":20633914063,"package_name":"protobuf","ecosystem":"pypi","requirements":"==4.25.3","direct":true,"kind":"runtime","optional":false},{"id":20633914064,"package_name":"py-spy","ecosystem":"pypi","requirements":"==0.3.14","direct":true,"kind":"runtime","optional":false},{"id":20633914203,"package_name":"pyarrow","ecosystem":"pypi","requirements":"==15.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633914204,"package_name":"pyarrow-hotfix","ecosystem":"pypi","requirements":"==0.6","direct":true,"kind":"runtime","optional":false},{"id":20633914205,"package_name":"pyasn1","ecosystem":"pypi","requirements":"==0.5.1","direct":true,"kind":"runtime","optional":false},{"id":20633914206,"package_name":"pyasn1-modules","ecosystem":"pypi","requirements":"==0.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633914207,"package_name":"pycparser","ecosystem":"pypi","requirements":"==2.21","direct":true,"kind":"runtime","optional":false},{"id":20633914208,"package_name":"pydantic","ecosystem":"pypi","requirements":"==2.6.1","direct":true,"kind":"runtime","optional":false},{"id":20633914209,"package_name":"pydantic_core","ecosystem":"pypi","requirements":"==2.16.2","direct":true,"kind":"runtime","optional":false},{"id":20633914210,"package_name":"pydeseq2","ecosystem":"pypi","requirements":"==0.4.7","direct":true,"kind":"runtime","optional":false},{"id":20633914211,"package_name":"pynndescent","ecosystem":"pypi","requirements":"==0.5.11","direct":true,"kind":"runtime","optional":false},{"id":20633914212,"package_name":"pyparsing","ecosystem":"pypi","requirements":"==3.1.1","direct":true,"kind":"runtime","optional":false},{"id":20633914213,"package_name":"python-dotenv","ecosystem":"pypi","requirements":"==1.0.1","direct":true,"kind":"runtime","optional":false},{"id":20633914214,"package_name":"python-json-logger","ecosystem":"pypi","requirements":"==2.0.7","direct":true,"kind":"runtime","optional":false},{"id":20633914215,"package_name":"pyudorandom","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633914216,"package_name":"PyYAML","ecosystem":"pypi","requirements":"==6.0.1","direct":true,"kind":"runtime","optional":false},{"id":20633914217,"package_name":"ray","ecosystem":"pypi","requirements":"==2.38.0","direct":true,"kind":"runtime","optional":false},{"id":20633914218,"package_name":"referencing","ecosystem":"pypi","requirements":"==0.33.0","direct":true,"kind":"runtime","optional":false},{"id":20633914219,"package_name":"regex","ecosystem":"pypi","requirements":"==2023.12.25","direct":true,"kind":"runtime","optional":false},{"id":20633914220,"package_name":"requests","ecosystem":"pypi","requirements":"==2.31.0","direct":true,"kind":"runtime","optional":false},{"id":20633914221,"package_name":"rfc3339-validator","ecosystem":"pypi","requirements":"==0.1.4","direct":true,"kind":"runtime","optional":false},{"id":20633914222,"package_name":"rfc3986-validator","ecosystem":"pypi","requirements":"==0.1.1","direct":true,"kind":"runtime","optional":false},{"id":20633914223,"package_name":"rpds-py","ecosystem":"pypi","requirements":"==0.18.0","direct":true,"kind":"runtime","optional":false},{"id":20633914224,"package_name":"rsa","ecosystem":"pypi","requirements":"==4.9","direct":true,"kind":"runtime","optional":false},{"id":20633914225,"package_name":"safetensors","ecosystem":"pypi","requirements":"==0.4.2","direct":true,"kind":"runtime","optional":false},{"id":20633914226,"package_name":"scanpy","ecosystem":"pypi","requirements":"==1.9.8","direct":true,"kind":"runtime","optional":false},{"id":20633914227,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"==1.4.1.post1","direct":true,"kind":"runtime","optional":false},{"id":20633914228,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.12.0","direct":true,"kind":"runtime","optional":false},{"id":20633914229,"package_name":"seaborn","ecosystem":"pypi","requirements":"==0.13.2","direct":true,"kind":"runtime","optional":false},{"id":20633914230,"package_name":"Send2Trash","ecosystem":"pypi","requirements":"==1.8.2","direct":true,"kind":"runtime","optional":false},{"id":20633914231,"package_name":"session-info","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633914232,"package_name":"shap","ecosystem":"pypi","requirements":"==0.44.1","direct":true,"kind":"runtime","optional":false},{"id":20633914233,"package_name":"slicer","ecosystem":"pypi","requirements":"==0.0.7","direct":true,"kind":"runtime","optional":false},{"id":20633914234,"package_name":"smart-open","ecosystem":"pypi","requirements":"==6.4.0","direct":true,"kind":"runtime","optional":false},{"id":20633914235,"package_name":"sniffio","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633914236,"package_name":"sortedcontainers","ecosystem":"pypi","requirements":"==2.4.0","direct":true,"kind":"runtime","optional":false},{"id":20633914237,"package_name":"soupsieve","ecosystem":"pypi","requirements":"==2.5","direct":true,"kind":"runtime","optional":false},{"id":20633914238,"package_name":"starlette","ecosystem":"pypi","requirements":"==0.32.0.post1","direct":true,"kind":"runtime","optional":false},{"id":20633914239,"package_name":"statsmodels","ecosystem":"pypi","requirements":"==0.14.1","direct":true,"kind":"runtime","optional":false},{"id":20633914240,"package_name":"stdlib-list","ecosystem":"pypi","requirements":"==0.10.0","direct":true,"kind":"runtime","optional":false},{"id":20633914241,"package_name":"sympy","ecosystem":"pypi","requirements":"==1.12","direct":true,"kind":"runtime","optional":false},{"id":20633914242,"package_name":"tblib","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633914243,"package_name":"tdigest","ecosystem":"pypi","requirements":"==0.5.2.2","direct":true,"kind":"runtime","optional":false},{"id":20633914245,"package_name":"tensorboardX","ecosystem":"pypi","requirements":"==2.6.2.2","direct":true,"kind":"runtime","optional":false},{"id":20633914246,"package_name":"terminado","ecosystem":"pypi","requirements":"==0.18.0","direct":true,"kind":"runtime","optional":false},{"id":20633914247,"package_name":"threadpoolctl","ecosystem":"pypi","requirements":"==3.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633914248,"package_name":"tinycss2","ecosystem":"pypi","requirements":"==1.2.1","direct":true,"kind":"runtime","optional":false},{"id":20633914249,"package_name":"tokenizers","ecosystem":"pypi","requirements":"==0.15.2","direct":true,"kind":"runtime","optional":false},{"id":20633914250,"package_name":"toolz","ecosystem":"pypi","requirements":"==0.12.1","direct":true,"kind":"runtime","optional":false},{"id":20633914251,"package_name":"torch","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633914252,"package_name":"torchaudio","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633914253,"package_name":"torchvision","ecosystem":"pypi","requirements":"==0.17.0","direct":true,"kind":"runtime","optional":false},{"id":20633914254,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.66.2","direct":true,"kind":"runtime","optional":false},{"id":20633914255,"package_name":"transformers","ecosystem":"pypi","requirements":"==4.37.2","direct":true,"kind":"runtime","optional":false},{"id":20633914256,"package_name":"triton","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633914257,"package_name":"types-python-dateutil","ecosystem":"pypi","requirements":"==2.8.19.20240106","direct":true,"kind":"runtime","optional":false},{"id":20633914258,"package_name":"typing_extensions","ecosystem":"pypi","requirements":"==4.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633914259,"package_name":"umap-learn","ecosystem":"pypi","requirements":"==0.5.5","direct":true,"kind":"runtime","optional":false},{"id":20633914832,"package_name":"uri-template","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":20633914835,"package_name":"urllib3","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"runtime","optional":false},{"id":20633914837,"package_name":"uvicorn","ecosystem":"pypi","requirements":"==0.27.1","direct":true,"kind":"runtime","optional":false},{"id":20633914839,"package_name":"uvloop","ecosystem":"pypi","requirements":"==0.19.0","direct":true,"kind":"runtime","optional":false},{"id":20633914840,"package_name":"virtualenv","ecosystem":"pypi","requirements":"==20.25.0","direct":true,"kind":"runtime","optional":false},{"id":20633914842,"package_name":"watchfiles","ecosystem":"pypi","requirements":"==0.21.0","direct":true,"kind":"runtime","optional":false},{"id":20633914844,"package_name":"webcolors","ecosystem":"pypi","requirements":"==1.13","direct":true,"kind":"runtime","optional":false},{"id":20633914846,"package_name":"webencodings","ecosystem":"pypi","requirements":"==0.5.1","direct":true,"kind":"runtime","optional":false},{"id":20633914848,"package_name":"websocket-client","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"runtime","optional":false},{"id":20633914850,"package_name":"websockets","ecosystem":"pypi","requirements":"==12.0","direct":true,"kind":"runtime","optional":false},{"id":20633914852,"package_name":"xxhash","ecosystem":"pypi","requirements":"==3.4.1","direct":true,"kind":"runtime","optional":false},{"id":20633914854,"package_name":"xyzservices","ecosystem":"pypi","requirements":"==2024.9.0","direct":true,"kind":"runtime","optional":false},{"id":20633914856,"package_name":"yarl","ecosystem":"pypi","requirements":"==1.9.4","direct":true,"kind":"runtime","optional":false},{"id":20633914858,"package_name":"zict","ecosystem":"pypi","requirements":"==3.0.0","direct":true,"kind":"runtime","optional":false},{"id":20633914861,"package_name":"zipp","ecosystem":"pypi","requirements":"==3.20.2","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-08T23:54:28.002Z","updated_at":"2025-10-07T08:35:31.524Z","avatar_url":"https://github.com/Barabasi-Lab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/137144","html_url":"https://science.ecosyste.ms/projects/137144"}