{"id":139092,"name":null,"description":"Run_dbcan V5","url":"https://github.com/bcb-unl/run_dbcan","last_synced_at":"2025-09-09T13:08:14.583Z","repository":{"id":275221617,"uuid":"925444053","full_name":"bcb-unl/run_dbcan","owner":"bcb-unl","description":"Run_dbcan V5","archived":false,"fork":false,"pushed_at":"2025-07-15T04:18:31.000Z","size":138212,"stargazers_count":18,"open_issues_count":2,"forks_count":2,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-07-15T09:56:23.522Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bcb-unl.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2025-01-31T22:25:09.000Z","updated_at":"2025-07-15T04:18:34.000Z","dependencies_parsed_at":"2025-04-01T19:34:32.987Z","dependency_job_id":"b89d7138-69e9-42e8-87f1-99936617dc36","html_url":"https://github.com/bcb-unl/run_dbcan","commit_stats":null,"previous_names":["bcb-unl/run_dbcan_new","bcb-unl/run_dbcan"],"tags_count":10,"template":false,"template_full_name":null,"purl":"pkg:github/bcb-unl/run_dbcan","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcb-unl","download_url":"https://codeload.github.com/bcb-unl/run_dbcan/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274300176,"owners_count":25259716,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bcb-unl","name":"bcb-unl","uuid":"175139738","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/175139738?v=4","repositories_count":1,"last_synced_at":"2024-07-12T23:47:43.517Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bcb-unl","funding_links":[],"total_stars":0,"followers":1,"following":0,"created_at":"2024-07-12T23:47:43.688Z","updated_at":"2024-07-12T23:47:43.688Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcb-unl","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bcb-unl/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bcb-unl/run_dbcan","html_url":"https://github.com/bcb-unl/run_dbcan","last_synced_at":"2025-09-03T12:46:03.443Z","status":null,"issues_count":15,"pull_requests_count":4,"avg_time_to_close_issue":646536.375,"avg_time_to_close_pull_request":862102.5,"issues_closed_count":8,"pull_requests_closed_count":2,"pull_request_authors_count":3,"issue_authors_count":10,"avg_comments_per_issue":1.8666666666666667,"avg_comments_per_pull_request":0.25,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":15,"past_year_pull_requests_count":4,"past_year_avg_time_to_close_issue":646536.375,"past_year_avg_time_to_close_pull_request":862102.5,"past_year_issues_closed_count":8,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":10,"past_year_avg_comments_per_issue":1.8666666666666667,"past_year_avg_comments_per_pull_request":0.25,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2025-08-29T12:22:15.094Z","updated_at":"2025-09-03T12:46:03.444Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bcb-unl%2Frun_dbcan/issues","issue_labels_count":{"bug":9,"enhancement":2,"question":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":13,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"NONE":3,"CONTRIBUTOR":1},"issue_authors":{"jmattock5":5,"Xinpeng021001":2,"caelanjmiller":1,"AaronAOliver":1,"ruixuan-zhang":1,"robcli":1,"zhaolei6116":1,"mohitsharma-123":1,"SinaedaA":1,"antonluckyjay":1},"pull_request_authors":{"noelle-haddad":2,"Xinpeng021001":1,"AaronAOliver":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10182778,"issues_count":32029690,"pull_requests_count":100720980,"authors_count":10737440,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":9,"enhancement":2,"question":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":13,"CONTRIBUTOR":2},"past_year_pull_request_author_associations_count":{"NONE":3,"CONTRIBUTOR":1},"past_year_issue_authors":{"jmattock5":5,"Xinpeng021001":2,"AaronAOliver":1,"antonluckyjay":1,"caelanjmiller":1,"mohitsharma-123":1,"robcli":1,"ruixuan-zhang":1,"SinaedaA":1,"zhaolei6116":1},"past_year_pull_request_authors":{"noelle-haddad":2,"AaronAOliver":1,"Xinpeng021001":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"CreateEvent":16,"ReleaseEvent":7,"IssuesEvent":29,"WatchEvent":17,"DeleteEvent":5,"IssueCommentEvent":49,"PushEvent":39,"PullRequestEvent":5,"ForkEvent":3},"last_year":{"CreateEvent":16,"ReleaseEvent":7,"IssuesEvent":29,"WatchEvent":17,"DeleteEvent":5,"IssueCommentEvent":49,"PushEvent":39,"PullRequestEvent":5,"ForkEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2025-02-01T00:27:40.952Z","updated_at":"2025-02-01T00:27:40.952Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/docs/requirements.txt","dependencies":[{"id":21694492413,"package_name":"sphinx","ecosystem":"pypi","requirements":"==7.1.2","direct":true,"kind":"runtime","optional":false},{"id":21694492414,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"==1.3.0rc1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-03-15T09:36:14.642Z","updated_at":"2025-03-15T09:36:14.642Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/pyproject.toml","dependencies":[{"id":22273697544,"package_name":"psutil","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697545,"package_name":"tqdm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697546,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697547,"package_name":"requests","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697548,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697549,"package_name":"openpyxl","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697550,"package_name":"pyhmmer","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697551,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697552,"package_name":"bcbio-gff","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697556,"package_name":"pyrodigal","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697557,"package_name":"pysam","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697558,"package_name":"seaborn","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":22273697559,"package_name":"importlib_metadata","ecosystem":"pypi","requirements":"python_version\u003c'3.13'","direct":true,"kind":"runtime","optional":false},{"id":22273697560,"package_name":"session-info","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build_dbcan_docker.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:26.808Z","updated_at":"2025-04-01T19:34:26.808Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/.github/workflows/build_dbcan_docker.yml","dependencies":[{"id":22509061825,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":22509061826,"package_name":"docker/setup-qemu-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":22509061827,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":22509061828,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"9ec57ed1fcdbf14dcef7dfbe97b2010124a938b7","direct":true,"kind":"composite","optional":false},{"id":22509061829,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":22509061830,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pypi_release.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:26.863Z","updated_at":"2025-04-01T19:34:26.863Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/.github/workflows/pypi_release.yml","dependencies":[{"id":22509061832,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":22509061833,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":22509061834,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test_dbcan.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:26.916Z","updated_at":"2025-04-01T19:34:26.916Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/.github/workflows/test_dbcan.yml","dependencies":[{"id":22509061835,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":22509061836,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"docker/Dockerfile","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:29.808Z","updated_at":"2025-04-01T19:34:29.808Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/docker/Dockerfile","dependencies":[{"id":22509061847,"package_name":"mambaorg/micromamba","ecosystem":"docker","requirements":"2-ubuntu22.04","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"docker/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:31.069Z","updated_at":"2025-04-01T19:34:31.069Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/docker/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:31.125Z","updated_at":"2025-04-01T19:34:31.125Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/environment.yml","dependencies":[]},{"ecosystem":"pypi","filepath":"envs/environment.yml","sha":null,"kind":"manifest","created_at":"2025-04-01T19:34:31.167Z","updated_at":"2025-04-01T19:34:31.167Z","repository_link":"https://github.com/bcb-unl/run_dbcan/blob/master/envs/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-08T23:59:33.530Z","updated_at":"2025-10-07T08:35:45.879Z","avatar_url":"https://github.com/bcb-unl.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/nar/gkad328","https://doi.org/10.1093/nar/gky418","https://doi.org/10.1093/nar/gkx894*"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/139092","html_url":"https://science.ecosyste.ms/projects/139092"}