{"id":139707,"name":null,"description":"Trim lots of metagenomics samples all at once","url":"https://github.com/beardymcjohnface/trimnami","last_synced_at":"2025-09-09T13:16:02.445Z","repository":{"id":176823031,"uuid":"655561423","full_name":"beardymcjohnface/Trimnami","owner":"beardymcjohnface","description":"Trim lots of metagenomics samples all at once","archived":false,"fork":false,"pushed_at":"2024-05-02T06:20:18.000Z","size":38348,"stargazers_count":10,"open_issues_count":2,"forks_count":1,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-08-31T21:34:24.728Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/beardymcjohnface.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2023-06-19T06:44:51.000Z","updated_at":"2025-04-21T12:46:27.000Z","dependencies_parsed_at":"2024-05-02T06:40:50.254Z","dependency_job_id":"5057c1c2-977a-40d6-910d-abe35cfbac92","html_url":"https://github.com/beardymcjohnface/Trimnami","commit_stats":null,"previous_names":["beardymcjohnface/trimnami"],"tags_count":14,"template":false,"template_full_name":null,"purl":"pkg:github/beardymcjohnface/Trimnami","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2FTrimnami","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2FTrimnami/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2FTrimnami/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2FTrimnami/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/beardymcjohnface","download_url":"https://codeload.github.com/beardymcjohnface/Trimnami/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2FTrimnami/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274300173,"owners_count":25259716,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"beardymcjohnface","name":"Michael Roach","uuid":"24821504","kind":"user","description":"","email":"","website":"bioinf.cc","location":null,"twitter":"beardymcface","company":"Flinders University","icon_url":"https://avatars.githubusercontent.com/u/24821504?u=5e461cf063ed260ad461bd28cd11fdff9aa49a61\u0026v=4","repositories_count":6,"last_synced_at":"2023-03-06T22:49:13.873Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/beardymcjohnface","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-03-06T22:49:13.877Z","updated_at":"2023-03-06T22:49:13.877Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/beardymcjohnface","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/beardymcjohnface/repositories"},"packages":null,"commits":{"id":9294479,"full_name":"beardymcjohnface/trimnami","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-03-23T00:39:45.450Z","updated_at":"2025-03-23T00:39:45.450Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2Ftrimnami/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5520942,"commits_count":866208588,"contributors_count":31829474,"owners_count":916548,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"beardymcjohnface/trimnami","html_url":"https://github.com/beardymcjohnface/trimnami","last_synced_at":"2025-08-31T21:32:15.454Z","status":"error","issues_count":4,"pull_requests_count":15,"avg_time_to_close_issue":5789329.0,"avg_time_to_close_pull_request":13839.066666666668,"issues_closed_count":2,"pull_requests_closed_count":15,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.0,"avg_comments_per_pull_request":0.8666666666666667,"merged_pull_requests_count":15,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-03-23T00:39:45.649Z","updated_at":"2025-09-01T12:47:14.205Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2Ftrimnami","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/beardymcjohnface%2Ftrimnami/issues","issue_labels_count":{"enhancement":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":3,"OWNER":1},"pull_request_author_associations_count":{"OWNER":18},"issue_authors":{"npbhavya":2,"linsalrob":1,"beardymcjohnface":1},"pull_request_authors":{"beardymcjohnface":18},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10077808,"issues_count":31319768,"pull_requests_count":96023561,"authors_count":10691937,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"beardymcjohnface","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/beardymcjohnface"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":2,"ForkEvent":1},"last_year":{"WatchEvent":2,"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2023-06-28T12:00:42.076Z","updated_at":"2023-06-28T12:00:42.076Z","repository_link":"https://github.com/beardymcjohnface/Trimnami/blob/main/setup.py","dependencies":[{"id":10975861026,"package_name":"snakemake","ecosystem":"pypi","requirements":"\u003e=7.14.0","direct":true,"kind":"runtime","optional":false},{"id":10975861395,"package_name":"pyyaml","ecosystem":"pypi","requirements":"\u003e=6.0","direct":true,"kind":"runtime","optional":false},{"id":10975861399,"package_name":"Click","ecosystem":"pypi","requirements":"\u003e=8.1.3","direct":true,"kind":"runtime","optional":false},{"id":10975862622,"package_name":"metasnek","ecosystem":"pypi","requirements":"\u003e=0.0.1","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/codecov.yml","sha":null,"kind":"manifest","created_at":"2023-11-21T13:59:22.148Z","updated_at":"2023-11-21T13:59:22.148Z","repository_link":"https://github.com/beardymcjohnface/Trimnami/blob/main/.github/workflows/codecov.yml","dependencies":[{"id":14637052220,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14637052224,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14637052227,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/python-app.yml","sha":null,"kind":"manifest","created_at":"2023-11-21T13:59:22.343Z","updated_at":"2023-11-21T13:59:22.343Z","repository_link":"https://github.com/beardymcjohnface/Trimnami/blob/main/.github/workflows/python-app.yml","dependencies":[{"id":14637052747,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14637052748,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/python-publish.yml","sha":null,"kind":"manifest","created_at":"2023-11-21T13:59:22.590Z","updated_at":"2023-11-21T13:59:22.590Z","repository_link":"https://github.com/beardymcjohnface/Trimnami/blob/main/.github/workflows/python-publish.yml","dependencies":[{"id":14637052750,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14637052751,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":14637052752,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"27b31702a0e7fc50959f5ad993c78deac1bdfc29","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/trimnami-build-envs.yml","sha":null,"kind":"manifest","created_at":"2024-02-08T01:35:34.041Z","updated_at":"2024-02-08T01:35:34.041Z","repository_link":"https://github.com/beardymcjohnface/Trimnami/blob/main/.github/workflows/trimnami-build-envs.yml","dependencies":[{"id":16103904742,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":16103904743,"package_name":"conda-incubator/setup-miniconda","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-09T00:07:22.239Z","updated_at":"2025-10-07T08:35:50.174Z","avatar_url":"https://github.com/beardymcjohnface.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/139707","html_url":"https://science.ecosyste.ms/projects/139707"}