{"id":1429,"name":"PCRedux","description":"PCRedux: A Quantitative PCR Machine Learning Toolkit - Published in JOSS (2022)","url":"https://github.com/pcruniversum/pcredux","last_synced_at":"2025-09-04T16:28:05.173Z","repository":{"id":41233134,"uuid":"101147995","full_name":"PCRuniversum/PCRedux","owner":"PCRuniversum","description":"quantitative PCR machine learning helper tool","archived":false,"fork":false,"pushed_at":"2024-07-28T15:11:16.000Z","size":97950,"stargazers_count":8,"open_issues_count":2,"forks_count":9,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-29T18:52:10.287Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PCRuniversum.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-08-23T06:53:58.000Z","updated_at":"2024-08-14T13:18:31.000Z","dependencies_parsed_at":"2025-04-09T22:03:20.609Z","dependency_job_id":null,"html_url":"https://github.com/PCRuniversum/PCRedux","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/PCRuniversum/PCRedux","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PCRuniversum%2FPCRedux","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PCRuniversum%2FPCRedux/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PCRuniversum%2FPCRedux/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PCRuniversum%2FPCRedux/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PCRuniversum","download_url":"https://codeload.github.com/PCRuniversum/PCRedux/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PCRuniversum%2FPCRedux/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273523663,"owners_count":25120864,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"PCRuniversum","name":"PCRuniversum","uuid":"57115945","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/57115945?v=4","repositories_count":9,"last_synced_at":"2023-09-09T05:50:17.647Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/PCRuniversum","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-08T03:55:48.216Z","updated_at":"2023-09-09T05:50:18.005Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PCRuniversum","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PCRuniversum/repositories"},"packages":[],"commits":{"id":7110378,"full_name":"pcruniversum/pcredux","default_branch":"master","committers":[{"name":"devSJR","email":"stefan.roediger@b-tu.de","login":"devSJR","count":374},{"name":"michbur","email":"michalburdukiewicz@gmail.com","login":"michbur","count":122},{"name":"Konstantin Blagodatskikh","email":"k.blag@yandex.ru","login":"kablag","count":14},{"name":"devSJR","email":"stefan.roediger@disroot.org","login":null,"count":5},{"name":"Dominik Rafacz","email":"d.rafacz@student.mini.pw.edu.pl","login":"DominikRafacz","count":3},{"name":"Charlotte Soneson","email":"charlottesoneson@gmail.com","login":"csoneson","count":2},{"name":"Andrej-Nikolai Spiess, PhD","email":"draspiess@gmail.com","login":"anspiess","count":2},{"name":"DTGT","email":"themegatgt48@gmail.com","login":null,"count":2}],"total_commits":524,"total_committers":8,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":65.5,"dds":0.2862595419847328,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T06:17:09.077Z","last_synced_commit":"28ed591f181cb68ac3dd93da319010ff48078e4a","created_at":"2024-12-01T03:08:27.011Z","updated_at":"2025-08-07T06:17:09.106Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcruniversum%2Fpcredux/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.276Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"pcruniversum/pcredux","html_url":"https://github.com/pcruniversum/pcredux","last_synced_at":"2025-08-31T18:44:27.767Z","status":"error","issues_count":7,"pull_requests_count":8,"avg_time_to_close_issue":457801.6,"avg_time_to_close_pull_request":218270.75,"issues_closed_count":5,"pull_requests_closed_count":8,"pull_request_authors_count":3,"issue_authors_count":6,"avg_comments_per_issue":3.5714285714285716,"avg_comments_per_pull_request":0.125,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-12-01T03:08:27.177Z","updated_at":"2025-08-31T18:44:27.768Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcruniversum%2Fpcredux","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pcruniversum%2Fpcredux/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":6,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":4,"NONE":2,"CONTRIBUTOR":2},"issue_authors":{"markziemann":2,"lcolumbo":1,"ramiromagno":1,"jaybee84":1,"vondoRishi":1,"kablag":1},"pull_request_authors":{"michbur":4,"PrzeChoj":2,"csoneson":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9957585,"issues_count":29574116,"pull_requests_count":85773325,"authors_count":9463536,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"michbur","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/michbur"},{"login":"kablag","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kablag"}],"active_maintainers":[]},"events":{"total":{"ForkEvent":1},"last_year":{"ForkEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-02T11:52:48.068Z","updated_at":"2022-08-02T11:52:48.068Z","repository_link":"https://github.com/PCRuniversum/PCRedux/blob/master/DESCRIPTION","dependencies":[{"id":539457862,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.5.0","direct":true,"kind":"depends","optional":false},{"id":539457863,"package_name":"bcp","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457864,"package_name":"changepoint","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457865,"package_name":"chipPCR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457866,"package_name":"ecp","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457867,"package_name":"fda.usc","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457868,"package_name":"MBmca","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457869,"package_name":"pbapply","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457870,"package_name":"pracma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457871,"package_name":"qpcR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457872,"package_name":"robustbase","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457873,"package_name":"segmented","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457874,"package_name":"shiny","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457875,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457876,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457877,"package_name":"zoo","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":539457878,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457879,"package_name":"future","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457880,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457881,"package_name":"listenv","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457882,"package_name":"RDML","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457883,"package_name":"readxl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457884,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457885,"package_name":"shinycssloaders","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457886,"package_name":"spelling","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457887,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":539457888,"package_name":"xtable","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/draft-pdf.yml","sha":null,"kind":"manifest","created_at":"2024-07-23T23:52:53.660Z","updated_at":"2024-07-23T23:52:53.660Z","repository_link":"https://github.com/PCRuniversum/PCRedux/blob/master/.github/workflows/draft-pdf.yml","dependencies":[{"id":19283404375,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19283404376,"package_name":"openjournals/openjournals-draft-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":19283404377,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2024-07-26T13:23:04.782Z","updated_at":"2024-07-26T13:23:04.782Z","repository_link":"https://github.com/PCRuniversum/PCRedux/blob/master/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":19340990622,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":19340990623,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19340990624,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19340990625,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19340990626,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/rhub.yaml","sha":null,"kind":"manifest","created_at":"2025-04-09T22:03:20.525Z","updated_at":"2025-04-09T22:03:20.525Z","repository_link":"https://github.com/PCRuniversum/PCRedux/blob/master/.github/workflows/rhub.yaml","dependencies":[{"id":22618605049,"package_name":"r-hub/actions/setup","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22618605050,"package_name":"r-hub/actions/checkout","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22618605051,"package_name":"r-hub/actions/platform-info","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22618605052,"package_name":"r-hub/actions/setup-deps","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22618605053,"package_name":"r-hub/actions/run-check","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":22618605054,"package_name":"r-hub/actions/setup-r","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":4.382026634673881,"created_at":"2025-09-04T09:17:47.871Z","updated_at":"2025-10-07T08:04:32.155Z","avatar_url":"https://github.com/PCRuniversum.png","language":"TeX","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1016%2Fj.bdq.2014.08.002","https://doi.org/10.1016%2Fj.bdq.2018.08.001"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/1429","html_url":"https://science.ecosyste.ms/projects/1429"}