{"id":145657,"name":null,"description":"A python library with scripts and helpers classes for quantms workflow","url":"https://github.com/bigbio/quantms-utils","last_synced_at":"2025-09-09T14:27:09.976Z","repository":{"id":240690874,"uuid":"803328426","full_name":"bigbio/quantms-utils","owner":"bigbio","description":"A python library with scripts and helpers classes for quantms workflow","archived":false,"fork":false,"pushed_at":"2025-05-09T17:05:20.000Z","size":84471,"stargazers_count":5,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-05-09T18:23:54.075Z","etag":null,"topics":["bigdata","cloud","mass-spectrometry","nextflow","proteogenomics","proteomics"],"latest_commit_sha":null,"homepage":"https://quantms.org","language":"Python","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bigbio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-05-20T14:11:27.000Z","updated_at":"2025-05-09T17:05:24.000Z","dependencies_parsed_at":"2024-07-17T19:42:48.604Z","dependency_job_id":"4c82c702-2208-4af2-8653-86a7644d1fb0","html_url":"https://github.com/bigbio/quantms-utils","commit_stats":null,"previous_names":["bigbio/pyquantms","bigbio/quantms-utils"],"tags_count":19,"template":false,"template_full_name":null,"purl":"pkg:github/bigbio/quantms-utils","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274310577,"owners_count":25261763,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bigbio","name":"BigBio Stack","uuid":"10880371","kind":"organization","description":"Provide big data solutions Bioinformatics","email":"proteomicsstack@gmail.com","website":"http://bigbio.xyz","location":"Cambridge, UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/10880371?v=4","repositories_count":24,"last_synced_at":"2023-03-02T07:10:22.666Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bigbio","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T00:32:40.298Z","updated_at":"2023-03-02T07:10:22.706Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio/repositories"},"packages":[{"id":10255522,"name":"quantms-utils","ecosystem":"pypi","description":"Python scripts and helpers for the quantMS workflow","homepage":null,"licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/bigbio/quantms-utils","keywords_array":["quantms","proteomics","mass-spectrometry","data-analysis","big data"],"namespace":null,"versions_count":23,"first_release_published_at":"2024-05-29T10:52:00.000Z","latest_release_published_at":"2025-05-14T17:28:53.000Z","latest_release_number":"0.0.23","last_synced_at":"2025-08-26T19:48:28.308Z","created_at":"2024-05-29T11:02:19.373Z","updated_at":"2025-08-26T19:48:28.309Z","registry_url":"https://pypi.org/project/quantms-utils/","install_command":"pip install quantms-utils --index-url https://pypi.org/simple","documentation_url":"https://quantms-utils.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","Intended Audience :: Science/Research","License :: OSI Approved :: MIT License","Operating System :: OS Independent","Programming Language :: Python :: 2","Programming Language :: Python :: 2.7","Programming Language :: Python :: 3","Programming Language :: Python :: 3 :: Only","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.12","Programming Language :: Python :: 3.13","Programming Language :: Python :: 3.4","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6","Programming Language :: Python :: 3.7","Programming Language :: Python :: 3.8","Programming Language :: Python :: 3.9","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"quantms-utils","project_status":null},"repo_metadata":{"id":240690874,"uuid":"803328426","full_name":"bigbio/quantms-utils","owner":"bigbio","description":"A python library with scripts and helpers classes for quantms workflow","archived":false,"fork":false,"pushed_at":"2024-08-25T08:27:56.000Z","size":61165,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":4,"default_branch":"main","last_synced_at":"2024-08-25T09:36:39.201Z","etag":null,"topics":["bigdata","cloud","mass-spectrometry","nextflow","proteogenomics","proteomics"],"latest_commit_sha":null,"homepage":"https://quantms.org","language":"Python","has_issues":false,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bigbio.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-05-20T14:11:27.000Z","updated_at":"2024-08-18T10:29:19.000Z","dependencies_parsed_at":"2024-07-17T19:42:48.604Z","dependency_job_id":"4c82c702-2208-4af2-8653-86a7644d1fb0","html_url":"https://github.com/bigbio/quantms-utils","commit_stats":null,"previous_names":["bigbio/pyquantms","bigbio/quantms-utils"],"tags_count":9,"template":false,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":216886811,"owners_count":16093394,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"bigbio","name":"BigBio Stack","uuid":"10880371","kind":"organization","description":"Provide big data solutions Bioinformatics","email":"proteomicsstack@gmail.com","website":"http://bigbio.xyz","location":"Cambridge, UK","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/10880371?v=4","repositories_count":24,"last_synced_at":"2023-03-02T07:10:22.666Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bigbio","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-13T00:32:40.298Z","updated_at":"2023-03-02T07:10:22.706Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bigbio/repositories"},"tags":[{"name":"v0.0.9","sha":"48c6ec946744170043533f353f8fe90964d45a0e","kind":"commit","published_at":"2024-08-16T14:36:08.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.9","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.9","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.9","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.9/manifests"},{"name":"v0.0.8","sha":"d7e5aa7ef2ed8cf86449679bac8f1e22d21ff9df","kind":"commit","published_at":"2024-08-15T08:03:11.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.8","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.8","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.8/manifests"},{"name":"v0.0.7","sha":"0af595af03dcb8e564165fca1591b70385a931a3","kind":"commit","published_at":"2024-08-13T19:51:34.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.7","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.7","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.7/manifests"},{"name":"v0.0.6","sha":"b2ffe2c8ece8903cfb9167c37b7426ca71ee8932","kind":"commit","published_at":"2024-08-12T14:22:21.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.6","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.6","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.6/manifests"},{"name":"v0.0.5","sha":"506e92f4c4dafd0d4bbfe7e78813cba5b4b83888","kind":"commit","published_at":"2024-08-11T09:08:05.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.5","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.5/manifests"},{"name":"v0.0.4","sha":"36be2d12e9545ec47121ecf3aed4c6d8f7b7c39b","kind":"commit","published_at":"2024-08-08T16:30:19.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.4","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.4/manifests"},{"name":"v0.0.3","sha":"5120daf124288265c151620a4e35b8ad8b6eba5d","kind":"commit","published_at":"2024-08-07T16:59:05.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.3","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.3/manifests"},{"name":"v0.0.2","sha":"583979dcfa18a96d76f5441677794c6645eecdc9","kind":"commit","published_at":"2024-05-30T08:32:24.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.2","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.2/manifests"},{"name":"v0.0.1","sha":"d8da3c43ef1a551a203b6cbcb65c76394b84e7cc","kind":"commit","published_at":"2024-05-29T10:39:51.000Z","download_url":"https://codeload.github.com/bigbio/quantms-utils/tar.gz/v0.0.1","html_url":"https://github.com/bigbio/quantms-utils/releases/tag/v0.0.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/tags/v0.0.1/manifests"}]},"repo_metadata_updated_at":"2024-08-25T14:22:05.488Z","dependent_packages_count":0,"downloads":88,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":61.24627624032518,"dependent_packages_count":10.877032407149619,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":36.0616543237374},"purl":"pkg:pypi/quantms-utils","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/quantms-utils","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/quantms-utils","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/quantms-utils/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/quantms-utils/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/quantms-utils/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/quantms-utils/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/quantms-utils/related_packages","maintainers":[{"uuid":"ypriverol","login":"ypriverol","name":null,"email":null,"url":null,"packages_count":14,"html_url":"https://pypi.org/user/ypriverol/","role":null,"created_at":"2024-05-29T11:03:23.066Z","updated_at":"2024-05-29T11:03:23.066Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/ypriverol/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726578,"maintainers_count":308865,"namespaces_count":0,"keywords_count":238369,"github":"pypi","metadata":{"funded_packages_count":50594},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-09T06:31:19.922Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bigbio/quantms-utils","html_url":"https://github.com/bigbio/quantms-utils","last_synced_at":"2025-08-31T18:07:24.534Z","status":null,"issues_count":0,"pull_requests_count":13,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":43059.0,"issues_closed_count":0,"pull_requests_closed_count":12,"pull_request_authors_count":3,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":1.2307692307692308,"merged_pull_requests_count":12,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":13,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":43059.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":12,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":1.2307692307692308,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":12,"created_at":"2025-08-30T16:49:22.317Z","updated_at":"2025-09-03T05:01:15.969Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bigbio%2Fquantms-utils/issues","issue_labels_count":{},"pull_request_labels_count":{"enhancement":2,"Review effort [1-5]: 3":2,"configuration changes":1,"Review effort [1-5]: 1":1},"issue_author_associations_count":{"MEMBER":1},"pull_request_author_associations_count":{"MEMBER":37,"COLLABORATOR":12,"NONE":1},"issue_authors":{"ypriverol":1},"pull_request_authors":{"ypriverol":37,"daichengxin":12,"fabianegli":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10189901,"issues_count":32145474,"pull_requests_count":101314001,"authors_count":10740598,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"Review effort [1-5]: 3":2,"enhancement":1,"configuration changes":1,"Review effort [1-5]: 1":1},"past_year_issue_author_associations_count":{"MEMBER":1},"past_year_pull_request_author_associations_count":{"MEMBER":18,"COLLABORATOR":7,"NONE":1},"past_year_issue_authors":{"ypriverol":1},"past_year_pull_request_authors":{"ypriverol":18,"daichengxin":7,"fabianegli":1},"maintainers":[{"login":"ypriverol","count":38,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ypriverol"},{"login":"daichengxin","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daichengxin"}],"active_maintainers":[{"login":"ypriverol","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ypriverol"},{"login":"daichengxin","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daichengxin"}]},"events":{"total":{"CreateEvent":10,"CommitCommentEvent":1,"IssuesEvent":1,"ReleaseEvent":11,"WatchEvent":2,"DeleteEvent":3,"IssueCommentEvent":39,"PushEvent":238,"PullRequestEvent":42,"PullRequestReviewCommentEvent":117,"PullRequestReviewEvent":199,"ForkEvent":3},"last_year":{"CreateEvent":10,"CommitCommentEvent":1,"IssuesEvent":1,"ReleaseEvent":11,"WatchEvent":2,"DeleteEvent":3,"IssueCommentEvent":39,"PushEvent":238,"PullRequestEvent":42,"PullRequestReviewCommentEvent":117,"PullRequestReviewEvent":199,"ForkEvent":3}},"keywords":["bigdata","cloud","mass-spectrometry","nextflow","proteogenomics","proteomics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/python-app.yml","sha":null,"kind":"manifest","created_at":"2024-05-20T16:49:55.510Z","updated_at":"2024-05-20T16:49:55.510Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/.github/workflows/python-app.yml","dependencies":[{"id":18182864996,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18182864997,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/python-package.yml","sha":null,"kind":"manifest","created_at":"2024-05-20T16:49:56.434Z","updated_at":"2024-05-20T16:49:56.434Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/.github/workflows/python-package.yml","dependencies":[{"id":18182865030,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18182865031,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-05-20T16:49:56.594Z","updated_at":"2024-05-20T16:49:56.594Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/pyproject.toml","dependencies":[{"id":18182865060,"package_name":"click","ecosystem":"pypi","requirements":"\u003e=7.0","direct":true,"kind":"runtime","optional":false},{"id":18182865061,"package_name":"pydantic","ecosystem":"pypi","requirements":"\u003e=1.10,\u003c2","direct":true,"kind":"runtime","optional":false},{"id":18182865062,"package_name":"python","ecosystem":"pypi","requirements":"^3.7","direct":true,"kind":"runtime","optional":false},{"id":18182865063,"package_name":"sdrf_pipelines","ecosystem":"pypi","requirements":"\u003e=0.0.26","direct":true,"kind":"runtime","optional":false},{"id":18182865667,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-05-20T16:49:57.372Z","updated_at":"2024-05-20T16:49:57.372Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/requirements.txt","dependencies":[{"id":18182865673,"package_name":"click","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":18182865674,"package_name":"sdrf_pipelines","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2024-05-20T16:49:57.428Z","updated_at":"2024-05-20T16:49:57.428Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/setup.py","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/python-publish.yml","sha":null,"kind":"manifest","created_at":"2024-05-28T04:25:25.804Z","updated_at":"2024-05-28T04:25:25.804Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/.github/workflows/python-publish.yml","dependencies":[{"id":18254354355,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18254354356,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":18254354357,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"27b31702a0e7fc50959f5ad993c78deac1bdfc29","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2024-07-17T19:42:45.938Z","updated_at":"2024-07-17T19:42:45.938Z","repository_link":"https://github.com/bigbio/quantms-utils/blob/main/environment.yml","dependencies":[{"id":19165685236,"package_name":"click","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685237,"package_name":"ms2rescore","ecosystem":"conda","requirements":"3.0.2.*","direct":true,"kind":"runtime","optional":false},{"id":19165685238,"package_name":"numpy","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685239,"package_name":"pandas","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685240,"package_name":"pip","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685241,"package_name":"protobuf","ecosystem":"conda","requirements":"\u003e=3.9.2,\u003c4","direct":true,"kind":"runtime","optional":false},{"id":19165685242,"package_name":"psm-utils","ecosystem":"conda","requirements":"0.8.0.*","direct":true,"kind":"runtime","optional":false},{"id":19165685243,"package_name":"pydantic","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685257,"package_name":"pyopenms","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":19165685273,"package_name":"sdrf-pipelines","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-09T00:22:01.376Z","updated_at":"2025-10-07T08:36:28.484Z","avatar_url":"https://github.com/bigbio.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":88,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/bioinformatics/btad058"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/145657","html_url":"https://science.ecosyste.ms/projects/145657"}