{"id":146852,"name":null,"description":"cdot-based transcript projections","url":"https://github.com/bihealth/dotty","last_synced_at":"2025-09-09T14:41:29.704Z","repository":{"id":197809356,"uuid":"699385933","full_name":"bihealth/dotty","owner":"bihealth","description":"cdot-based transcript projections","archived":false,"fork":false,"pushed_at":"2025-08-12T03:19:21.000Z","size":553,"stargazers_count":0,"open_issues_count":4,"forks_count":0,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-12T05:29:47.426Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bihealth.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":"CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.rst","dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-10-02T14:29:29.000Z","updated_at":"2025-08-12T03:19:24.000Z","dependencies_parsed_at":"2023-11-13T20:25:03.832Z","dependency_job_id":"1831bf42-6ed4-49ef-bac9-0f24b40d2c4c","html_url":"https://github.com/bihealth/dotty","commit_stats":null,"previous_names":["bihealth/dotty"],"tags_count":8,"template":false,"template_full_name":null,"purl":"pkg:github/bihealth/dotty","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth","download_url":"https://codeload.github.com/bihealth/dotty/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274314350,"owners_count":25262623,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bihealth","name":"Berlin Institute of Health","uuid":"11364301","kind":"organization","description":"BIH Core Unit Bioinformatics \u0026 BIH HPC IT","email":null,"website":"https://www.cubi.bihealth.org/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/11364301?v=4","repositories_count":215,"last_synced_at":"2024-04-16T02:59:21.051Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bihealth","funding_links":[],"total_stars":325,"followers":33,"following":0,"created_at":"2022-11-06T07:31:40.804Z","updated_at":"2024-04-16T03:00:18.012Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bihealth/dotty","html_url":"https://github.com/bihealth/dotty","last_synced_at":"2025-08-31T08:03:46.324Z","status":null,"issues_count":5,"pull_requests_count":93,"avg_time_to_close_issue":85754.66666666667,"avg_time_to_close_pull_request":95096.59090909091,"issues_closed_count":3,"pull_requests_closed_count":88,"pull_request_authors_count":4,"issue_authors_count":2,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.3118279569892473,"merged_pull_requests_count":83,"bot_issues_count":0,"bot_pull_requests_count":75,"past_year_issues_count":0,"past_year_pull_requests_count":29,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":24393.04,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":25,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.034482758620689655,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":29,"past_year_merged_pull_requests_count":24,"created_at":"2024-04-16T02:13:07.134Z","updated_at":"2025-09-03T06:45:51.942Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fdotty/issues","issue_labels_count":{"enhancement":4,"bug":2,"dependencies":2},"pull_request_labels_count":{"dependencies":135,"python":18,"autorelease: tagged":6,"autorelease: pending":2},"issue_author_associations_count":{"CONTRIBUTOR":5,"MEMBER":3},"pull_request_author_associations_count":{"CONTRIBUTOR":146,"MEMBER":8},"issue_authors":{"holtgrewe":3,"gromdimon":3,"dependabot[bot]":2},"pull_request_authors":{"dependabot[bot]":135,"varfish-bot":8,"holtgrewe":8,"gromdimon":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10080966,"issues_count":31268296,"pull_requests_count":96067200,"authors_count":10693694,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"dependencies":2},"past_year_pull_request_labels_count":{"dependencies":49,"python":18},"past_year_issue_author_associations_count":{"CONTRIBUTOR":2},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":49},"past_year_issue_authors":{"dependabot[bot]":2},"past_year_pull_request_authors":{"dependabot[bot]":49},"maintainers":[{"login":"holtgrewe","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/holtgrewe"}],"active_maintainers":[]},"events":{"total":{"DeleteEvent":46,"IssueCommentEvent":2,"PushEvent":41,"PullRequestEvent":93,"CreateEvent":42},"last_year":{"DeleteEvent":46,"IssueCommentEvent":2,"PushEvent":41,"PullRequestEvent":93,"CreateEvent":42}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/automerge.yml","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:52.685Z","updated_at":"2023-10-02T19:48:52.685Z","repository_link":"https://github.com/bihealth/dotty/blob/main/.github/workflows/automerge.yml","dependencies":[]},{"ecosystem":"actions","filepath":".github/workflows/conventional-prs.yml","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:52.724Z","updated_at":"2023-10-02T19:48:52.724Z","repository_link":"https://github.com/bihealth/dotty/blob/main/.github/workflows/conventional-prs.yml","dependencies":[{"id":14061908461,"package_name":"amannn/action-semantic-pull-request","ecosystem":"actions","requirements":"v3.4.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/docker-build.yml","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:52.943Z","updated_at":"2023-10-02T19:48:52.943Z","repository_link":"https://github.com/bihealth/dotty/blob/main/.github/workflows/docker-build.yml","dependencies":[{"id":14061909048,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14061909053,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":14061909056,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14061909059,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/main.yml","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:52.971Z","updated_at":"2023-10-02T19:48:52.971Z","repository_link":"https://github.com/bihealth/dotty/blob/main/.github/workflows/main.yml","dependencies":[{"id":14061909310,"package_name":"khan/pull-request-workflow-cancel","ecosystem":"actions","requirements":"1.0.0","direct":true,"kind":"composite","optional":false},{"id":14061909481,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14061909482,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":14061909483,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/release-please.yml","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:53.054Z","updated_at":"2023-10-02T19:48:53.054Z","repository_link":"https://github.com/bihealth/dotty/blob/main/.github/workflows/release-please.yml","dependencies":[{"id":14061909602,"package_name":"GoogleCloudPlatform/release-please-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"utils/docker/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:53.122Z","updated_at":"2023-10-02T19:48:53.122Z","repository_link":"https://github.com/bihealth/dotty/blob/main/utils/docker/Dockerfile","dependencies":[{"id":14061909603,"package_name":"python","ecosystem":"docker","requirements":"3.10-slim","direct":true,"kind":"build","optional":false},{"id":14061909604,"package_name":"base","ecosystem":"docker","requirements":"latest","direct":true,"kind":"build","optional":false}]},{"ecosystem":"pypi","filepath":"Pipfile","sha":null,"kind":"manifest","created_at":"2023-10-02T19:48:53.187Z","updated_at":"2023-10-02T19:48:53.187Z","repository_link":"https://github.com/bihealth/dotty/blob/main/Pipfile","dependencies":[{"id":14061909605,"package_name":"cdot","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14061909615,"package_name":"fastapi","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14061909616,"package_name":"black","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false},{"id":14061909617,"package_name":"flake8","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false},{"id":14061909618,"package_name":"mypy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false},{"id":14061909619,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false},{"id":14061909620,"package_name":"pytest-coverage","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false},{"id":14061909625,"package_name":"isort","ecosystem":"pypi","requirements":"*","direct":true,"kind":"develop","optional":false}]},{"ecosystem":"pypi","filepath":"Pipfile.lock","sha":null,"kind":"lockfile","created_at":"2023-10-02T19:48:53.827Z","updated_at":"2023-10-02T19:48:53.827Z","repository_link":"https://github.com/bihealth/dotty/blob/main/Pipfile.lock","dependencies":[{"id":14061909769,"package_name":"annotated-types","ecosystem":"pypi","requirements":"==0.5.0","direct":false,"kind":"runtime","optional":false},{"id":14061909770,"package_name":"anyio","ecosystem":"pypi","requirements":"==3.7.1","direct":false,"kind":"runtime","optional":false},{"id":14061909771,"package_name":"attrs","ecosystem":"pypi","requirements":"==23.1.0","direct":false,"kind":"runtime","optional":false},{"id":14061909772,"package_name":"bioutils","ecosystem":"pypi","requirements":"==0.5.8.post1","direct":false,"kind":"runtime","optional":false},{"id":14061909773,"package_name":"cdot","ecosystem":"pypi","requirements":"==0.2.21","direct":false,"kind":"runtime","optional":false},{"id":14061909774,"package_name":"certifi","ecosystem":"pypi","requirements":"==2023.7.22","direct":false,"kind":"runtime","optional":false},{"id":14061909775,"package_name":"charset-normalizer","ecosystem":"pypi","requirements":"==3.3.0","direct":false,"kind":"runtime","optional":false},{"id":14061909776,"package_name":"exceptiongroup","ecosystem":"pypi","requirements":"==1.1.3","direct":false,"kind":"runtime","optional":false},{"id":14061909777,"package_name":"fastapi","ecosystem":"pypi","requirements":"==0.103.2","direct":false,"kind":"runtime","optional":false},{"id":14061909778,"package_name":"idna","ecosystem":"pypi","requirements":"==3.4","direct":false,"kind":"runtime","optional":false},{"id":14061909779,"package_name":"intervaltree","ecosystem":"pypi","requirements":"==3.1.0","direct":false,"kind":"runtime","optional":false},{"id":14061909780,"package_name":"lazy","ecosystem":"pypi","requirements":"==1.6","direct":false,"kind":"runtime","optional":false},{"id":14061909781,"package_name":"pydantic","ecosystem":"pypi","requirements":"==2.4.2","direct":false,"kind":"runtime","optional":false},{"id":14061909782,"package_name":"pydantic-core","ecosystem":"pypi","requirements":"==2.10.1","direct":false,"kind":"runtime","optional":false},{"id":14061909783,"package_name":"requests","ecosystem":"pypi","requirements":"==2.31.0","direct":false,"kind":"runtime","optional":false},{"id":14061909784,"package_name":"sniffio","ecosystem":"pypi","requirements":"==1.3.0","direct":false,"kind":"runtime","optional":false},{"id":14061909785,"package_name":"sortedcontainers","ecosystem":"pypi","requirements":"==2.4.0","direct":false,"kind":"runtime","optional":false},{"id":14061909786,"package_name":"starlette","ecosystem":"pypi","requirements":"==0.27.0","direct":false,"kind":"runtime","optional":false},{"id":14061909787,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"==4.8.0","direct":false,"kind":"runtime","optional":false},{"id":14061909788,"package_name":"urllib3","ecosystem":"pypi","requirements":"==1.26.16","direct":false,"kind":"runtime","optional":false},{"id":14061909789,"package_name":"black","ecosystem":"pypi","requirements":"==23.9.1","direct":false,"kind":"develop","optional":false},{"id":14061909790,"package_name":"click","ecosystem":"pypi","requirements":"==8.1.7","direct":false,"kind":"develop","optional":false},{"id":14061909791,"package_name":"coverage","ecosystem":"pypi","requirements":"==7.3.1","direct":false,"kind":"develop","optional":false},{"id":14061909792,"package_name":"exceptiongroup","ecosystem":"pypi","requirements":"==1.1.3","direct":false,"kind":"develop","optional":false},{"id":14061909793,"package_name":"flake8","ecosystem":"pypi","requirements":"==6.1.0","direct":false,"kind":"develop","optional":false},{"id":14061909794,"package_name":"iniconfig","ecosystem":"pypi","requirements":"==2.0.0","direct":false,"kind":"develop","optional":false},{"id":14061909795,"package_name":"isort","ecosystem":"pypi","requirements":"==5.12.0","direct":false,"kind":"develop","optional":false},{"id":14061909796,"package_name":"mccabe","ecosystem":"pypi","requirements":"==0.7.0","direct":false,"kind":"develop","optional":false},{"id":14061909797,"package_name":"mypy","ecosystem":"pypi","requirements":"==1.5.1","direct":false,"kind":"develop","optional":false},{"id":14061909798,"package_name":"mypy-extensions","ecosystem":"pypi","requirements":"==1.0.0","direct":false,"kind":"develop","optional":false},{"id":14061909799,"package_name":"packaging","ecosystem":"pypi","requirements":"==23.2","direct":false,"kind":"develop","optional":false},{"id":14061909800,"package_name":"pathspec","ecosystem":"pypi","requirements":"==0.11.2","direct":false,"kind":"develop","optional":false},{"id":14061909801,"package_name":"platformdirs","ecosystem":"pypi","requirements":"==3.10.0","direct":false,"kind":"develop","optional":false},{"id":14061909802,"package_name":"pluggy","ecosystem":"pypi","requirements":"==1.3.0","direct":false,"kind":"develop","optional":false},{"id":14061909803,"package_name":"pycodestyle","ecosystem":"pypi","requirements":"==2.11.0","direct":false,"kind":"develop","optional":false},{"id":14061909804,"package_name":"pyflakes","ecosystem":"pypi","requirements":"==3.1.0","direct":false,"kind":"develop","optional":false},{"id":14061909805,"package_name":"pytest","ecosystem":"pypi","requirements":"==7.4.2","direct":false,"kind":"develop","optional":false},{"id":14061909806,"package_name":"pytest-cov","ecosystem":"pypi","requirements":"==4.1.0","direct":false,"kind":"develop","optional":false},{"id":14061909807,"package_name":"pytest-cover","ecosystem":"pypi","requirements":"==3.0.0","direct":false,"kind":"develop","optional":false},{"id":14061909808,"package_name":"pytest-coverage","ecosystem":"pypi","requirements":"==0.0","direct":false,"kind":"develop","optional":false},{"id":14061909809,"package_name":"tomli","ecosystem":"pypi","requirements":"==2.0.1","direct":false,"kind":"develop","optional":false},{"id":14061909810,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"==4.8.0","direct":false,"kind":"develop","optional":false}]}],"score":null,"created_at":"2025-09-09T00:23:11.279Z","updated_at":"2025-10-07T08:36:45.802Z","avatar_url":"https://github.com/bihealth.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/146852","html_url":"https://science.ecosyste.ms/projects/146852"}