{"id":147779,"name":null,"description":"Manipulation of SQLite-based annotations in Bioconductor","url":"https://github.com/bioconductor/annotationdbi","last_synced_at":"2025-09-09T14:53:48.413Z","repository":{"id":78156029,"uuid":"102146566","full_name":"Bioconductor/AnnotationDbi","owner":"Bioconductor","description":"Manipulation of SQLite-based annotations in Bioconductor","archived":false,"fork":false,"pushed_at":"2025-07-29T00:17:14.000Z","size":5620,"stargazers_count":9,"open_issues_count":6,"forks_count":10,"subscribers_count":9,"default_branch":"devel","last_synced_at":"2025-07-29T02:30:37.588Z","etag":null,"topics":["bioconductor-package","core-package"],"latest_commit_sha":null,"homepage":"https://bioconductor.org/packages/AnnotationDbi","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-09-01T19:31:21.000Z","updated_at":"2025-07-29T00:17:18.000Z","dependencies_parsed_at":"2023-10-20T18:25:42.312Z","dependency_job_id":"a035513a-da5d-4096-bf7c-e484446c57e7","html_url":"https://github.com/Bioconductor/AnnotationDbi","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Bioconductor/AnnotationDbi","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/AnnotationDbi/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274315410,"owners_count":25262702,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Bioconductor","name":"Bioconductor","uuid":"2286807","kind":"organization","description":"Software for the analysis and comprehension of high-throughput genomic data","email":null,"website":"https://bioconductor.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/2286807?v=4","repositories_count":156,"last_synced_at":"2023-03-23T23:56:09.614Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Bioconductor","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T18:52:48.833Z","updated_at":"2023-03-23T23:56:10.504Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor/repositories"},"packages":[],"commits":{"id":5127481,"full_name":"bioconductor/annotationdbi","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-11T11:37:33.343Z","updated_at":"2024-11-11T11:37:33.343Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor%2Fannotationdbi/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5525076,"commits_count":868419076,"contributors_count":31953891,"owners_count":917152,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Bioconductor/AnnotationDbi","html_url":"https://github.com/Bioconductor/AnnotationDbi","last_synced_at":"2024-11-11T11:37:36.177Z","status":null,"issues_count":9,"pull_requests_count":5,"avg_time_to_close_issue":295777.4,"avg_time_to_close_pull_request":33843.0,"issues_closed_count":5,"pull_requests_closed_count":3,"pull_request_authors_count":5,"issue_authors_count":9,"avg_comments_per_issue":3.3333333333333335,"avg_comments_per_pull_request":4.4,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":33743.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":1.0,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-01T20:03:14.314Z","updated_at":"2025-09-03T03:33:44.733Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2FAnnotationDbi/issues","issue_labels_count":{"blocked":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":9,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"NONE":3,"CONTRIBUTOR":2},"issue_authors":{"LTLA":1,"MichaelChirico":1,"gerardq675":1,"shanie-landen":1,"lambdamoses":1,"janstrauss1":1,"JakeLehle":1,"jwokaty":1,"dmicklem":1,"WangYe661":1,"mtmorgan":1},"pull_request_authors":{"MichaelChirico":1,"Kayla-Morrell":1,"lckarssen":1,"jwokaty":1,"BerylKanali":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10098650,"issues_count":31447165,"pull_requests_count":97330651,"authors_count":10702032,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":2},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"dmicklem":1,"WangYe661":1},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":4,"IssueCommentEvent":5,"PushEvent":4},"last_year":{"IssuesEvent":4,"IssueCommentEvent":5,"PushEvent":4}},"keywords":["bioconductor-package","core-package"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-10-20T18:25:41.138Z","updated_at":"2023-10-20T18:25:41.138Z","repository_link":"https://github.com/Bioconductor/AnnotationDbi/blob/devel/DESCRIPTION","dependencies":[{"id":14267521280,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 2.7.0","direct":true,"kind":"depends","optional":false},{"id":14267521281,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14267521282,"package_name":"stats4","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14267521283,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"\u003e= 0.29.2","direct":true,"kind":"depends","optional":false},{"id":14267521284,"package_name":"Biobase","ecosystem":"cran","requirements":"\u003e= 1.17.0","direct":true,"kind":"depends","optional":false},{"id":14267521285,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14267521286,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521287,"package_name":"RSQLite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521288,"package_name":"S4Vectors","ecosystem":"cran","requirements":"\u003e= 0.9.25","direct":true,"kind":"imports","optional":false},{"id":14267521289,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521290,"package_name":"KEGGREST","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521291,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521292,"package_name":"hgu95av2.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521293,"package_name":"GO.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521294,"package_name":"org.Sc.sgd.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521443,"package_name":"org.At.tair.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521472,"package_name":"RUnit","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521473,"package_name":"TxDb.Hsapiens.UCSC.hg19.knownGene","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521474,"package_name":"org.Hs.eg.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521475,"package_name":"reactome.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521477,"package_name":"AnnotationForge","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521616,"package_name":"graph","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521617,"package_name":"EnsDb.Hsapiens.v75","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521618,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521619,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"cran","filepath":"inst/extdata/org.testing.db/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-10-20T18:25:42.284Z","updated_at":"2023-10-20T18:25:42.284Z","repository_link":"https://github.com/Bioconductor/AnnotationDbi/blob/devel/inst/extdata/org.testing.db/DESCRIPTION","dependencies":[{"id":14267521681,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 2.7.0","direct":true,"kind":"depends","optional":false},{"id":14267521682,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14267521683,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"\u003e= 1.23.23","direct":true,"kind":"depends","optional":false},{"id":14267521684,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521685,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14267521686,"package_name":"annotate","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14267521687,"package_name":"RUnit","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-09T00:25:16.727Z","updated_at":"2025-10-07T08:36:53.480Z","avatar_url":"https://github.com/Bioconductor.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/147779","html_url":"https://science.ecosyste.ms/projects/147779"}