{"id":147812,"name":null,"description":"A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)","url":"https://github.com/bioconductor/txdbmaker","last_synced_at":"2025-09-09T14:53:56.803Z","repository":{"id":204057759,"uuid":"711004738","full_name":"Bioconductor/txdbmaker","owner":"Bioconductor","description":"A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)","archived":false,"fork":false,"pushed_at":"2025-06-23T04:41:26.000Z","size":1185,"stargazers_count":3,"open_issues_count":6,"forks_count":1,"subscribers_count":9,"default_branch":"devel","last_synced_at":"2025-06-23T05:31:22.062Z","etag":null,"topics":["bioconductor-package","core-package"],"latest_commit_sha":null,"homepage":"","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Bioconductor.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-10-28T00:06:40.000Z","updated_at":"2025-06-23T04:39:20.000Z","dependencies_parsed_at":"2024-01-29T19:16:39.392Z","dependency_job_id":"47e91dbd-363e-4c27-b1b4-f9657f4ca785","html_url":"https://github.com/Bioconductor/txdbmaker","commit_stats":null,"previous_names":["bioconductor/txdbmaker"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Bioconductor/txdbmaker","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","download_url":"https://codeload.github.com/Bioconductor/txdbmaker/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274315510,"owners_count":25262702,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Bioconductor","name":"Bioconductor","uuid":"2286807","kind":"organization","description":"Software for the analysis and comprehension of high-throughput genomic data","email":null,"website":"https://bioconductor.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/2286807?v=4","repositories_count":156,"last_synced_at":"2023-03-23T23:56:09.614Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Bioconductor","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T18:52:48.833Z","updated_at":"2023-03-23T23:56:10.504Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Bioconductor/repositories"},"packages":[],"commits":{"id":5127218,"full_name":"bioconductor/txdbmaker","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-11T11:36:30.577Z","updated_at":"2024-11-11T11:36:30.577Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor%2Ftxdbmaker/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5525076,"commits_count":868419076,"contributors_count":31953891,"owners_count":917152,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"Bioconductor/txdbmaker","html_url":"https://github.com/Bioconductor/txdbmaker","last_synced_at":"2025-08-31T09:01:43.498Z","status":null,"issues_count":9,"pull_requests_count":1,"avg_time_to_close_issue":2608.0,"avg_time_to_close_pull_request":14973.0,"issues_closed_count":1,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":8,"avg_comments_per_issue":1.0,"avg_comments_per_pull_request":2.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":4,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":2608.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":4,"past_year_avg_comments_per_issue":0.75,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-05-01T20:02:47.737Z","updated_at":"2025-09-03T04:03:47.315Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Bioconductor%2Ftxdbmaker/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":7,"CONTRIBUTOR":1},"pull_request_author_associations_count":{"NONE":2,"CONTRIBUTOR":1},"issue_authors":{"Rohit-Satyam":1,"duz39":1,"mjsteinbaugh":1,"jmacdon":1,"hpages":1,"Scoupshan":1,"mukhyala":1,"Muchmorepig":1},"pull_request_authors":{"LiNk-NY":2,"rcastelo":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10154851,"issues_count":32078797,"pull_requests_count":100129860,"authors_count":10723973,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":5},"past_year_pull_request_author_associations_count":{"NONE":1},"past_year_issue_authors":{"duz39":1,"jmacdon":1,"Muchmorepig":1,"Rohit-Satyam":1,"Scoupshan":1},"past_year_pull_request_authors":{"rcastelo":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":6,"WatchEvent":1,"DeleteEvent":1,"IssueCommentEvent":13,"PushEvent":15,"PullRequestEvent":2,"ForkEvent":1,"CreateEvent":2},"last_year":{"IssuesEvent":6,"WatchEvent":1,"DeleteEvent":1,"IssueCommentEvent":13,"PushEvent":15,"PullRequestEvent":2,"ForkEvent":1,"CreateEvent":2}},"keywords":["bioconductor-package","core-package"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-11-02T00:36:06.275Z","updated_at":"2023-11-02T00:36:06.275Z","repository_link":"https://github.com/Bioconductor/txdbmaker/blob/devel/DESCRIPTION","dependencies":[{"id":14301986639,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.4.0","direct":true,"kind":"depends","optional":false},{"id":14301986675,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986676,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986680,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986791,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986832,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986845,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986859,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301986862,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301986863,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301986887,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301986905,"package_name":"tools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301986935,"package_name":"DBI","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301986938,"package_name":"RSQLite","ecosystem":"cran","requirements":"\u003e= 2.0","direct":true,"kind":"imports","optional":false},{"id":14301987139,"package_name":"Biobase","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301987331,"package_name":"BiocIO","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301987854,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301987877,"package_name":"biomaRt","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":14301988046,"package_name":"RMariaDB","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301988325,"package_name":"mirbase.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301988830,"package_name":"ensembldb","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301988834,"package_name":"RUnit","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301989097,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301989100,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":14301989263,"package_name":"markdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"cran","filepath":"inst/txdb-template/DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-11-02T00:36:39.350Z","updated_at":"2023-11-02T00:36:39.350Z","repository_link":"https://github.com/Bioconductor/txdbmaker/blob/devel/inst/txdb-template/DESCRIPTION","dependencies":[{"id":14301989276,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":14301989277,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false}]}],"score":null,"created_at":"2025-09-09T00:25:21.191Z","updated_at":"2025-10-07T08:36:54.066Z","avatar_url":"https://github.com/Bioconductor.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/147812","html_url":"https://science.ecosyste.ms/projects/147812"}