{"id":148292,"name":null,"description":null,"url":"https://github.com/bioconductor-source/systempiper","last_synced_at":"2025-09-09T14:58:21.827Z","repository":{"id":253859322,"uuid":"844729349","full_name":"bioconductor-source/systemPipeR","owner":"bioconductor-source","description":null,"archived":false,"fork":false,"pushed_at":"2024-08-19T21:22:24.000Z","size":243753,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2024-08-20T02:59:41.335Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioconductor-source.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS","contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-19T21:19:08.000Z","updated_at":"2024-08-20T03:03:06.574Z","dependencies_parsed_at":"2024-08-20T03:13:21.548Z","dependency_job_id":null,"html_url":"https://github.com/bioconductor-source/systemPipeR","commit_stats":null,"previous_names":["bioconductor-source/systempiper"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bioconductor-source/systemPipeR","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FsystemPipeR","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FsystemPipeR/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FsystemPipeR/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FsystemPipeR/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","download_url":"https://codeload.github.com/bioconductor-source/systemPipeR/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FsystemPipeR/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316067,"owners_count":25262705,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bioconductor-source","name":"(WIP DEV) Bioconductor Packages","uuid":"178512913","kind":"organization","description":"Source code for packages accepted into Bioconductor","email":"maintainer@bioconductor.org","website":"https://bioconductor.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/178512913?v=4","repositories_count":1,"last_synced_at":"2024-08-20T02:18:46.971Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioconductor-source","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-08-20T02:18:47.062Z","updated_at":"2024-08-20T02:18:47.062Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bioconductor-source/systempiper","html_url":"https://github.com/bioconductor-source/systempiper","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-09T14:58:07.011Z","updated_at":"2025-09-09T14:58:07.011Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fsystempiper","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fsystempiper/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10193878,"issues_count":32254962,"pull_requests_count":101822519,"authors_count":10740620,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/R-CMD-build_check.yml","sha":null,"kind":"manifest","created_at":"2024-08-20T03:13:21.155Z","updated_at":"2024-08-20T03:13:21.155Z","repository_link":"https://github.com/bioconductor-source/systemPipeR/blob/devel/.github/workflows/R-CMD-build_check.yml","dependencies":[{"id":19802056493,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19802056494,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19802056495,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19802056496,"package_name":"actions/cache","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19802056497,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update_cwl.yaml","sha":null,"kind":"manifest","created_at":"2024-08-20T03:13:21.395Z","updated_at":"2024-08-20T03:13:21.395Z","repository_link":"https://github.com/bioconductor-source/systemPipeR/blob/devel/.github/workflows/update_cwl.yaml","dependencies":[{"id":19802056522,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19802056523,"package_name":"ad-m/github-push-action","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2024-08-20T03:13:21.487Z","updated_at":"2024-08-20T03:13:21.487Z","repository_link":"https://github.com/bioconductor-source/systemPipeR/blob/devel/DESCRIPTION","dependencies":[{"id":19802056561,"package_name":"Rsamtools","ecosystem":"cran","requirements":"\u003e= 1.31.2","direct":true,"kind":"depends","optional":false},{"id":19802056562,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":19802056563,"package_name":"ShortRead","ecosystem":"cran","requirements":"\u003e= 1.37.1","direct":true,"kind":"depends","optional":false},{"id":19802056564,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"depends","optional":false},{"id":19802056565,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056566,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056567,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056568,"package_name":"yaml","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056569,"package_name":"stringr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056570,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056571,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056572,"package_name":"crayon","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056573,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056574,"package_name":"htmlwidgets","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19802056575,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056576,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056577,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056578,"package_name":"systemPipeRdata","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056579,"package_name":"GenomicAlignments","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056580,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056581,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056582,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056583,"package_name":"rjson","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056584,"package_name":"annotate","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056585,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056586,"package_name":"kableExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056587,"package_name":"GO.db","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056588,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056589,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056590,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056591,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056592,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056593,"package_name":"DESeq2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056594,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056595,"package_name":"batchtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056596,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056597,"package_name":"txdbmaker","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19802056598,"package_name":"VariantAnnotation","ecosystem":"cran","requirements":"\u003e= 1.25.11","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-09T00:25:43.431Z","updated_at":"2025-10-07T08:37:01.860Z","avatar_url":"https://github.com/bioconductor-source.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/148292","html_url":"https://science.ecosyste.ms/projects/148292"}