{"id":148419,"name":null,"description":null,"url":"https://github.com/bioconductor-source/spatiallibd","last_synced_at":"2025-09-09T14:59:44.261Z","repository":{"id":253859184,"uuid":"844715352","full_name":"bioconductor-source/spatialLIBD","owner":"bioconductor-source","description":null,"archived":false,"fork":false,"pushed_at":"2024-08-19T20:34:09.000Z","size":19057,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2024-08-20T02:59:23.532Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioconductor-source.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS.md","contributing":".github/CONTRIBUTING.md","funding":null,"license":null,"code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.md","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-19T20:33:42.000Z","updated_at":"2024-08-20T03:02:50.144Z","dependencies_parsed_at":"2024-08-21T19:49:56.941Z","dependency_job_id":null,"html_url":"https://github.com/bioconductor-source/spatialLIBD","commit_stats":null,"previous_names":["bioconductor-source/spatiallibd"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bioconductor-source/spatialLIBD","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FspatialLIBD","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FspatialLIBD/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FspatialLIBD/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FspatialLIBD/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","download_url":"https://codeload.github.com/bioconductor-source/spatialLIBD/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2FspatialLIBD/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316169,"owners_count":25262706,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bioconductor-source","name":"(WIP DEV) Bioconductor Packages","uuid":"178512913","kind":"organization","description":"Source code for packages accepted into Bioconductor","email":"maintainer@bioconductor.org","website":"https://bioconductor.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/178512913?v=4","repositories_count":1,"last_synced_at":"2024-08-20T02:18:46.971Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioconductor-source","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-08-20T02:18:47.062Z","updated_at":"2024-08-20T02:18:47.062Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bioconductor-source/spatiallibd","html_url":"https://github.com/bioconductor-source/spatiallibd","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-09T14:59:37.967Z","updated_at":"2025-09-09T14:59:37.967Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fspatiallibd","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fspatiallibd/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10193878,"issues_count":32254962,"pull_requests_count":101822519,"authors_count":10740620,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/check-bioc.yml","sha":null,"kind":"manifest","created_at":"2024-08-20T03:02:46.828Z","updated_at":"2024-08-20T03:02:46.828Z","repository_link":"https://github.com/bioconductor-source/spatialLIBD/blob/devel/.github/workflows/check-bioc.yml","dependencies":[{"id":19801961709,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":19801961710,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801961711,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801961712,"package_name":"actions/cache","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":19801961713,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"releases/v4","direct":true,"kind":"composite","optional":false},{"id":19801961714,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"master","direct":true,"kind":"composite","optional":false},{"id":19801961715,"package_name":"docker/setup-qemu-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801961716,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801961717,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801961718,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2024-08-20T03:02:47.547Z","updated_at":"2024-08-20T03:02:47.547Z","repository_link":"https://github.com/bioconductor-source/spatialLIBD/blob/devel/DESCRIPTION","dependencies":[{"id":19801961753,"package_name":"SpatialExperiment","ecosystem":"cran","requirements":"\u003e= 1.3.3","direct":true,"kind":"depends","optional":false},{"id":19801961754,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.6","direct":true,"kind":"depends","optional":false},{"id":19801961755,"package_name":"shiny","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961756,"package_name":"golem","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961757,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961758,"package_name":"cowplot","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961759,"package_name":"plotly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961760,"package_name":"viridisLite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961761,"package_name":"shinyWidgets","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961762,"package_name":"sessioninfo","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961763,"package_name":"grid","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961764,"package_name":"grDevices","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961765,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961766,"package_name":"AnnotationHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961767,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961768,"package_name":"png","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961769,"package_name":"scater","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961770,"package_name":"DT","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961771,"package_name":"ExperimentHub","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961772,"package_name":"RColorBrewer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961773,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961774,"package_name":"stats","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961775,"package_name":"graphics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961776,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961777,"package_name":"IRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961778,"package_name":"fields","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961779,"package_name":"benchmarkme","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961780,"package_name":"SingleCellExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961781,"package_name":"BiocFileCache","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961782,"package_name":"jsonlite","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961783,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961784,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961785,"package_name":"Matrix","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961786,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961787,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961788,"package_name":"magick","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961789,"package_name":"paletteer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961790,"package_name":"scuttle","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961791,"package_name":"edgeR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961792,"package_name":"limma","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961793,"package_name":"statmod","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961794,"package_name":"MatrixGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961795,"package_name":"rlang","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961796,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801961797,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961798,"package_name":"RefManageR","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961799,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961800,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961801,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"suggests","optional":false},{"id":19801961802,"package_name":"covr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961803,"package_name":"here","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961804,"package_name":"BiocManager","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961805,"package_name":"lobstr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801961806,"package_name":"DropletUtils","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-09T00:25:51.842Z","updated_at":"2025-10-07T08:37:04.203Z","avatar_url":"https://github.com/bioconductor-source.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/s41593-020-00787-0","https://doi.org/10.6084/m9.figshare.13623902.v1"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/148419","html_url":"https://science.ecosyste.ms/projects/148419"}