{"id":148584,"name":null,"description":null,"url":"https://github.com/bioconductor-source/scruff","last_synced_at":"2025-09-09T15:01:55.954Z","repository":{"id":253858997,"uuid":"844693872","full_name":"bioconductor-source/scruff","owner":"bioconductor-source","description":null,"archived":false,"fork":false,"pushed_at":"2024-08-19T19:31:12.000Z","size":29203,"stargazers_count":0,"open_issues_count":0,"forks_count":0,"subscribers_count":2,"default_branch":"devel","last_synced_at":"2024-08-20T02:58:57.725Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioconductor-source.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2024-08-19T19:30:39.000Z","updated_at":"2024-08-20T03:01:42.172Z","dependencies_parsed_at":"2024-08-21T19:49:34.357Z","dependency_job_id":null,"html_url":"https://github.com/bioconductor-source/scruff","commit_stats":null,"previous_names":["bioconductor-source/scruff"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bioconductor-source/scruff","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","download_url":"https://codeload.github.com/bioconductor-source/scruff/tar.gz/refs/heads/devel","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316387,"owners_count":25262707,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bioconductor-source","name":"(WIP DEV) Bioconductor Packages","uuid":"178512913","kind":"organization","description":"Source code for packages accepted into Bioconductor","email":"maintainer@bioconductor.org","website":"https://bioconductor.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/178512913?v=4","repositories_count":1,"last_synced_at":"2024-08-20T02:18:46.971Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioconductor-source","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-08-20T02:18:47.062Z","updated_at":"2024-08-20T02:18:47.062Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioconductor-source/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bioconductor-source/scruff","html_url":"https://github.com/bioconductor-source/scruff","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-09T15:01:29.818Z","updated_at":"2025-09-09T15:01:29.818Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioconductor-source%2Fscruff/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10193878,"issues_count":32254962,"pull_requests_count":101822519,"authors_count":10740620,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2024-08-20T03:01:39.497Z","updated_at":"2024-08-20T03:01:39.497Z","repository_link":"https://github.com/bioconductor-source/scruff/blob/devel/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":19801952583,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":19801952584,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19801952585,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19801952586,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19801952587,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":19801952588,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2024-08-20T03:01:39.645Z","updated_at":"2024-08-20T03:01:39.645Z","repository_link":"https://github.com/bioconductor-source/scruff/blob/devel/DESCRIPTION","dependencies":[{"id":19801952674,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 4.0","direct":true,"kind":"depends","optional":false},{"id":19801952675,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952676,"package_name":"GenomicAlignments","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952677,"package_name":"GenomicFeatures","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952678,"package_name":"txdbmaker","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952679,"package_name":"GenomicRanges","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952680,"package_name":"Rsamtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952681,"package_name":"ShortRead","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952684,"package_name":"parallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952685,"package_name":"plyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952686,"package_name":"BiocGenerics","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952687,"package_name":"BiocParallel","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952688,"package_name":"S4Vectors","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952689,"package_name":"AnnotationDbi","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952690,"package_name":"Biostrings","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952691,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952692,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952693,"package_name":"ggthemes","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952694,"package_name":"scales","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952695,"package_name":"GenomeInfoDb","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952696,"package_name":"stringdist","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952697,"package_name":"ggbio","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952698,"package_name":"rtracklayer","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952699,"package_name":"SingleCellExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952700,"package_name":"SummarizedExperiment","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952701,"package_name":"Rsubread","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952702,"package_name":"parallelly","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":19801952703,"package_name":"BiocStyle","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801952704,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801952705,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":19801952706,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":null,"created_at":"2025-09-09T00:25:56.993Z","updated_at":"2025-10-07T08:37:06.996Z","avatar_url":"https://github.com/bioconductor-source.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1186/s12859-019-2797-2","https://doi.org/10.1093/nar/gkz114","https://doi.org/10.1371/journal.pcbi.1006361"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/148584","html_url":"https://science.ecosyste.ms/projects/148584"}