{"id":14900,"name":"rbaps","description":"R implementation of the BAPS software for Bayesian Analysis of Population Structure","url":"https://github.com/ocbe-uio/rbaps","last_synced_at":"2025-09-04T22:35:12.205Z","repository":{"id":46704630,"uuid":"227603003","full_name":"ocbe-uio/rBAPS","owner":"ocbe-uio","description":"R implementation of the BAPS software for Bayesian Analysis of Population Structure","archived":false,"fork":false,"pushed_at":"2025-01-15T10:11:41.000Z","size":1071,"stargazers_count":10,"open_issues_count":8,"forks_count":4,"subscribers_count":2,"default_branch":"develop","last_synced_at":"2025-07-11T23:37:26.993Z","etag":null,"topics":["bayesian-analysis","population-structure","r-package"],"latest_commit_sha":null,"homepage":"http://www.helsinki.fi/bsg/software/BAPS/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/ocbe-uio.png","metadata":{"files":{"readme":"README.md","changelog":"NEWS.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-12-12T12:34:55.000Z","updated_at":"2025-01-15T10:21:42.000Z","dependencies_parsed_at":"2023-01-30T18:45:55.440Z","dependency_job_id":"36476d10-6f73-4e41-831b-8b5e9e28aa0f","html_url":"https://github.com/ocbe-uio/rBAPS","commit_stats":{"total_commits":472,"total_committers":3,"mean_commits":"157.33333333333334","dds":"0.43855932203389836","last_synced_commit":"0f3c5708d638a87c90f5372834d83a0dc65428d3"},"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/ocbe-uio/rBAPS","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ocbe-uio","download_url":"https://codeload.github.com/ocbe-uio/rBAPS/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273684837,"owners_count":25149718,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"ocbe-uio","name":"Oslo Centre for Biostatistics and Epidemiology","uuid":"58079878","kind":"organization","description":"This is where we host some of the scientific software we produce at OCBE, a joint center between the University of Oslo and the Oslo University Hospital.","email":null,"website":"https://www.med.uio.no/imb/english/research/centres/ocbe/","location":"Oslo, Norway","twitter":"OCBE_UniOslo","company":null,"icon_url":"https://avatars.githubusercontent.com/u/58079878?v=4","repositories_count":22,"last_synced_at":"2023-03-05T23:35:50.852Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/ocbe-uio","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-16T00:49:33.497Z","updated_at":"2023-03-05T23:35:50.860Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ocbe-uio","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/ocbe-uio/repositories"},"packages":[],"commits":{"id":1434097,"full_name":"ocbe-uio/rBAPS","default_branch":"develop","committers":[{"name":"Waldir Leoncio","email":"waldir.leoncio@gmail.com","login":null,"count":265},{"name":"Waldir Leoncio","email":"w.l.netto@medisin.uio.no","login":null,"count":206},{"name":"Gerry Tonkin-Hill","email":"gt4@sanger.ac.uk","login":null,"count":1}],"total_commits":472,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":157.33333333333334,"dds":0.43855932203389836,"past_year_committers":[{"name":"Waldir Leoncio","email":"w.l.netto@medisin.uio.no","login":null,"count":96}],"past_year_total_commits":96,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":96.0,"past_year_dds":0.0,"last_synced_at":"2023-10-26T08:59:02.946Z","last_synced_commit":"0f3c5708d638a87c90f5372834d83a0dc65428d3","created_at":"2023-10-26T08:59:00.573Z","updated_at":"2023-10-26T08:59:02.947Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2FrBAPS/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"ocbe-uio/rbaps","html_url":"https://github.com/ocbe-uio/rbaps","last_synced_at":"2025-08-31T11:18:37.612Z","status":null,"issues_count":25,"pull_requests_count":0,"avg_time_to_close_issue":16037979.411764706,"avg_time_to_close_pull_request":null,"issues_closed_count":17,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":2,"avg_comments_per_issue":0.8,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-21T17:13:16.793Z","updated_at":"2025-08-31T11:18:37.613Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2Frbaps","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/ocbe-uio%2Frbaps/issues","issue_labels_count":{"enhancement":20,"bug":3,"help wanted":2,"good first issue":2,"documentation":1},"pull_request_labels_count":{},"issue_author_associations_count":{"MEMBER":24,"NONE":1},"pull_request_author_associations_count":{},"issue_authors":{"wleoncio":24,"fabio-marcelo":1},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9907264,"issues_count":29121902,"pull_requests_count":83489158,"authors_count":8856002,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"wleoncio","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/wleoncio"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":1,"IssueCommentEvent":6,"PushEvent":2,"ForkEvent":1},"last_year":{"IssuesEvent":1,"IssueCommentEvent":6,"PushEvent":2,"ForkEvent":1}},"keywords":["bayesian-analysis","population-structure","r-package"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-03T23:51:23.895Z","updated_at":"2022-09-03T23:51:23.895Z","repository_link":"https://github.com/ocbe-uio/rBAPS/blob/develop/DESCRIPTION","dependencies":[{"id":3729724589,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724590,"package_name":"ape","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724591,"package_name":"vcfR","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724592,"package_name":"Rsamtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724593,"package_name":"adegenet","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724594,"package_name":"matlab2r","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724595,"package_name":"R6","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":3729724596,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 2.1.0","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/build.yml","sha":null,"kind":"manifest","created_at":"2023-01-30T18:45:54.955Z","updated_at":"2023-01-30T18:45:54.955Z","repository_link":"https://github.com/ocbe-uio/rBAPS/blob/develop/.github/workflows/build.yml","dependencies":[{"id":7253039578,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7253039580,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7253039582,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7253039583,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7253039585,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linter.yml","sha":null,"kind":"manifest","created_at":"2023-01-30T18:45:55.048Z","updated_at":"2023-01-30T18:45:55.048Z","repository_link":"https://github.com/ocbe-uio/rBAPS/blob/develop/.github/workflows/linter.yml","dependencies":[{"id":7253040028,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7253040029,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7253040030,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-01-30T18:45:55.357Z","updated_at":"2023-01-30T18:45:55.357Z","repository_link":"https://github.com/ocbe-uio/rBAPS/blob/develop/.github/workflows/test-coverage.yaml","dependencies":[{"id":7253042391,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7253042394,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7253042397,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":3.9889840465642745,"created_at":"2025-09-04T15:50:45.748Z","updated_at":"2025-10-07T08:08:15.155Z","avatar_url":"https://github.com/ocbe-uio.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1111/j.1365-294X.2006.02994.x","https://doi.org/10.1186/1471-2105-9-539","https://doi.org/10.12688/wellcomeopenres.14694.1"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/14900","html_url":"https://science.ecosyste.ms/projects/14900","bibtex_url":"https://science.ecosyste.ms/projects/14900/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/14900/export.apalike"}