{"id":149673,"name":null,"description":"Parse and process SAM and BAM formatted files","url":"https://github.com/biojulia/xam.jl","last_synced_at":"2025-09-09T15:15:02.118Z","repository":{"id":45931233,"uuid":"201858041","full_name":"BioJulia/XAM.jl","owner":"BioJulia","description":"Parse and process SAM and BAM formatted files","archived":false,"fork":false,"pushed_at":"2025-04-26T03:41:17.000Z","size":2775,"stargazers_count":30,"open_issues_count":27,"forks_count":14,"subscribers_count":11,"default_branch":"develop","last_synced_at":"2025-08-25T07:19:13.989Z","etag":null,"topics":["bam","bam-files","bam-format","bioinformatics","biojulia","sam","sam-files","sam-format"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioJulia.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":".github/FUNDING.yml","license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null},"funding":{"open_collective":"biojulia"}},"created_at":"2019-08-12T04:31:09.000Z","updated_at":"2025-05-26T10:07:52.000Z","dependencies_parsed_at":"2023-02-08T08:30:35.070Z","dependency_job_id":"41097aed-48d2-4e03-8527-673ba537359e","html_url":"https://github.com/BioJulia/XAM.jl","commit_stats":{"total_commits":128,"total_committers":8,"mean_commits":16.0,"dds":0.2890625,"last_synced_commit":"5d975c14b3c7ebdca6e62c26cf3e65764c620501"},"previous_names":[],"tags_count":16,"template":false,"template_full_name":null,"purl":"pkg:github/BioJulia/XAM.jl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316665,"owners_count":25262710,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BioJulia","name":"BioJulia","uuid":"6486271","kind":"organization","description":"Bioinformatics and Computational Biology in Julia","email":null,"website":"https://biojulia.dev","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6486271?v=4","repositories_count":79,"last_synced_at":"2024-10-30T00:01:04.629Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioJulia","funding_links":[],"total_stars":1652,"followers":218,"following":0,"created_at":"2022-11-03T07:06:10.033Z","updated_at":"2024-10-30T00:01:04.629Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia/repositories"},"packages":[{"id":4321393,"name":"XAM","ecosystem":"julia","description":"Parse and process SAM and BAM formatted files","homepage":"","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/BioJulia/XAM.jl","keywords_array":["bioinformatics","sam-format","bam-format","sam","bam","sam-files","bam-files","biojulia"],"namespace":null,"versions_count":16,"first_release_published_at":"2020-02-28T05:18:23.000Z","latest_release_published_at":"2025-04-01T00:00:00.000Z","latest_release_number":"0.4.2","last_synced_at":"2025-08-25T06:22:25.118Z","created_at":"2022-04-19T16:40:23.863Z","updated_at":"2025-08-25T06:22:25.118Z","registry_url":"https://juliahub.com/ui/Packages/General/XAM/","install_command":"Pkg.add(\"XAM\")","documentation_url":"https://docs.juliahub.com/General/XAM/stable/","metadata":{"uuid":"d759349c-bcba-11e9-07c2-5b90f8f05f7c"},"repo_metadata":{"uuid":"201858041","full_name":"BioJulia/XAM.jl","owner":"BioJulia","description":"Parse and process SAM and BAM formatted files","archived":false,"fork":false,"pushed_at":"2023-07-06T20:58:17.000Z","size":2680,"stargazers_count":23,"open_issues_count":23,"forks_count":12,"subscribers_count":13,"default_branch":"develop","last_synced_at":"2024-01-03T10:10:07.069Z","etag":null,"topics":["bam","bam-files","bam-format","bioinformatics","biojulia","sam","sam-files","sam-format"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioJulia.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":".github/FUNDING.yml","license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null},"funding":{"open_collective":"biojulia"}},"created_at":"2019-08-12T04:31:09.000Z","updated_at":"2023-06-26T04:46:49.000Z","dependencies_parsed_at":"2023-02-08T08:30:35.070Z","dependency_job_id":"41097aed-48d2-4e03-8527-673ba537359e","html_url":"https://github.com/BioJulia/XAM.jl","commit_stats":{"total_commits":109,"total_committers":7,"mean_commits":"15.571428571428571","dds":"0.25688073394495414","last_synced_commit":"d2921847a8272d68f6439883de12e6abededefcc"},"previous_names":[],"tags_count":13,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/refs/heads/develop","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":179321274,"owners_count":10800167,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"BioJulia","name":"BioJulia","uuid":"6486271","kind":"organization","description":"Bioinformatics and Computational Biology in Julia","email":null,"website":"https://biojulia.net","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6486271?v=4","repositories_count":53,"last_synced_at":"2023-03-16T16:15:25.357Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioJulia","created_at":"2022-11-03T07:06:10.033Z","updated_at":"2023-03-16T16:15:25.730Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia/repositories"},"tags":[{"name":"v0.3.1","sha":"22f939ffbe3b3b765a3b47c43fd7b795fe433b54","kind":"tag","published_at":"2022-10-14T11:29:12.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.3.1","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.3.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.3.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.3.1/manifests"},{"name":"v0.3.0","sha":"946e77a7343bff28da35360820655e9960236b0f","kind":"tag","published_at":"2022-10-10T21:21:29.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.3.0","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.3.0/manifests"},{"name":"v0.2.8","sha":"0d7d14219217aa1dd1a2a89b23f225dfe4c4f3da","kind":"tag","published_at":"2022-08-15T05:58:16.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.8","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.8","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.8","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.8/manifests"},{"name":"v0.2.7","sha":"22667dc7afe68a76cd5cdbc22c65b77c0ddf15b3","kind":"commit","published_at":"2021-04-01T01:37:54.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.7","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.7","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.7","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.7/manifests"},{"name":"v0.2.6","sha":"a51e91141fe967a920228f6e6077f7a38e0451b5","kind":"commit","published_at":"2020-07-08T13:06:44.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.6","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.6","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.6/manifests"},{"name":"v0.2.5","sha":"dfa5a3217f67f7efbdb41770cb73f65edb6c922d","kind":"commit","published_at":"2020-06-22T00:48:03.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.5","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.5","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.5/manifests"},{"name":"v0.2.4","sha":"5918bf0193bc5822599119bba0e0b9a83f36d179","kind":"tag","published_at":"2020-05-24T00:03:17.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.4","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.4/manifests"},{"name":"v0.2.3","sha":"d0e82217b44e5171f22711546cfc996687f602de","kind":"tag","published_at":"2020-04-17T15:00:58.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.3","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.3/manifests"},{"name":"v0.2.2","sha":"0e0908f9852a2c1c3dc6d1214f993e3e364aeb73","kind":"commit","published_at":"2020-04-12T07:35:21.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.2","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.2/manifests"},{"name":"v0.2.1","sha":"7a8d64ab1347701543a1d993333f8f2b76865813","kind":"tag","published_at":"2020-03-21T07:00:44.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.1","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.1/manifests"},{"name":"v0.2.0","sha":"5bc504dc02464948a29cdb64c6cd5f210b6a0851","kind":"tag","published_at":"2020-03-16T12:01:15.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.2.0","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.2.0/manifests"},{"name":"v0.1.1","sha":"04fdda6ffabb13218cf81bdbbe3c84f1058c7657","kind":"tag","published_at":"2020-03-13T13:00:49.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.1.1","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"406d290b13053b7c27a72301d63b136cab28a654","kind":"commit","published_at":"2020-02-28T05:18:23.000Z","download_url":"https://codeload.github.com/BioJulia/XAM.jl/tar.gz/v0.1.0","html_url":"https://github.com/BioJulia/XAM.jl/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2024-01-05T12:33:09.682Z","dependent_packages_count":4,"downloads":107,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":9.939726027397262,"dependent_packages_count":13.161643835616438,"stargazers_count":22.71780821917808,"forks_count":12.504109589041096,"average":14.580821917808219},"purl":"pkg:julia/XAM","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/julia/XAM","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/julia/XAM","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/julia/XAM/dependencies","status":null,"funding_links":["https://opencollective.com/biojulia"],"critical":false,"issue_metadata":{"last_synced_at":"2024-01-03T10:04:54.195Z","issues_count":31,"pull_requests_count":31,"avg_time_to_close_issue":9717791.272727273,"avg_time_to_close_pull_request":4062318.8214285714,"issues_closed_count":11,"pull_requests_closed_count":28,"pull_request_authors_count":8,"issue_authors_count":17,"avg_comments_per_issue":2.2903225806451615,"avg_comments_per_pull_request":0.7419354838709677,"merged_pull_requests_count":14,"bot_issues_count":0,"bot_pull_requests_count":10,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":298405.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.6666666666666666,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/issues"},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/XAM/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/XAM/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/XAM/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/XAM/related_packages","maintainers":[],"registry":{"name":"juliahub.com","url":"https://juliahub.com","ecosystem":"julia","default":true,"packages_count":12698,"maintainers_count":0,"namespaces_count":0,"keywords_count":7444,"github":"JuliaRegistries","metadata":{"funded_packages_count":856},"icon_url":"https://github.com/JuliaRegistries.png","created_at":"2022-04-19T16:34:08.340Z","updated_at":"2025-09-09T06:56:17.241Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/namespaces"}}],"commits":{"id":710419,"full_name":"BioJulia/XAM.jl","default_branch":"develop","committers":[{"name":"Ciarán O'Mara","email":"Ciaran.OMara@utas.edu.au","login":"CiaranOMara","count":91},{"name":"Thomas A. Christensen II","email":"25492070+MillironX","login":"MillironX","count":16},{"name":"Jonathan Bieler","email":"jonathan.bieler@alumni.epfl.ch","login":"jonathanBieler","count":11},{"name":"Ciarán O'Mara","email":"ciaran@omara.id.au","login":null,"count":7},{"name":"Jakob Nybo Nissen","email":"jakobnybonissen@gmail.com","login":"jakobnissen","count":4},{"name":"Konrad Herbst","email":"k.herbst@stud.uni-heidelberg.de","login":"herbstk","count":2},{"name":"meerkat256","email":"151019504+meerkat256","login":"meerkat256","count":1},{"name":"Kyrin","email":"36867986+hanningk","login":"hanningk","count":1},{"name":"Diego Alvarez","email":"dialvarezs@gmail.com","login":"dialvarezs","count":1},{"name":"CompatHelper Julia","email":"compathelper_noreply@julialang.org","login":null,"count":1}],"total_commits":135,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":13.5,"dds":0.32592592592592595,"past_year_committers":[{"name":"Ciarán O'Mara","email":"ciaran@omara.id.au","login":null,"count":5},{"name":"meerkat256","email":"151019504+meerkat256","login":"meerkat256","count":1},{"name":"Kyrin","email":"36867986+hanningk","login":"hanningk","count":1},{"name":"CompatHelper Julia","email":"compathelper_noreply@julialang.org","login":null,"count":1}],"past_year_total_commits":8,"past_year_total_committers":4,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":2.0,"past_year_dds":0.375,"last_synced_at":"2025-07-01T08:40:35.037Z","last_synced_commit":"b4924361b7177e524965f1372f31e2c8e3d31d64","created_at":"2023-03-09T12:31:14.277Z","updated_at":"2025-07-01T08:40:35.037Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5525813,"commits_count":868589080,"contributors_count":31964088,"owners_count":917266,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"BioJulia/XAM.jl","html_url":"https://github.com/BioJulia/XAM.jl","last_synced_at":"2025-07-04T18:32:22.724Z","status":null,"issues_count":37,"pull_requests_count":40,"avg_time_to_close_issue":9318171.285714285,"avg_time_to_close_pull_request":4631697.028571429,"issues_closed_count":14,"pull_requests_closed_count":35,"pull_request_authors_count":10,"issue_authors_count":22,"avg_comments_per_issue":2.4054054054054053,"avg_comments_per_pull_request":1.05,"merged_pull_requests_count":19,"bot_issues_count":0,"bot_pull_requests_count":13,"past_year_issues_count":3,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":98402.0,"past_year_avg_time_to_close_pull_request":1569837.0,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":3.6666666666666665,"past_year_avg_comments_per_pull_request":1.5,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2023-05-10T15:57:08.570Z","updated_at":"2025-09-02T13:13:25.269Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FXAM.jl/issues","issue_labels_count":{"enhancement":6,"question":4,"bug":2,"documentation":2,"upstream issue":1,"good first issue":1,"help wanted":1},"pull_request_labels_count":{"enhancement":2,"bug":2,"question":2,"documentation":1},"issue_author_associations_count":{"NONE":23,"MEMBER":11,"CONTRIBUTOR":3},"pull_request_author_associations_count":{"MEMBER":25,"NONE":19,"CONTRIBUTOR":6},"issue_authors":{"jakobnissen":5,"CiaranOMara":4,"panxiaoguang":3,"yuifu":3,"egoecho":2,"phaverty":2,"MillironX":2,"jonathanBieler":2,"abhinavsns":1,"george-githinji":1,"mashu":1,"JuliaTagBot":1,"dialvarezs":1,"scikal":1,"rulixxx":1,"lcmmichielsen":1,"krishvishal":1,"yr-neurospace":1,"apraga":1,"junjunlab":1,"Xiao-Zhong":1,"scottiadamson":1},"pull_request_authors":{"github-actions[bot]":16,"jakobnissen":11,"CiaranOMara":9,"MillironX":4,"jonathanBieler":3,"hanningk":2,"meerkat256":2,"gitter-badger":1,"kescobo":1,"dialvarezs":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10171215,"issues_count":32017338,"pull_requests_count":100294441,"authors_count":10732031,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"bug":2,"question":2},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{"NONE":2,"CONTRIBUTOR":2},"past_year_issue_authors":{"scottiadamson":1},"past_year_pull_request_authors":{"meerkat256":2,"hanningk":2},"maintainers":[{"login":"jakobnissen","count":16,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jakobnissen"},{"login":"CiaranOMara","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/CiaranOMara"},{"login":"MillironX","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MillironX"},{"login":"kescobo","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kescobo"}],"active_maintainers":[]},"events":{"total":{"CreateEvent":7,"CommitCommentEvent":2,"ReleaseEvent":2,"IssuesEvent":1,"WatchEvent":3,"DeleteEvent":1,"IssueCommentEvent":11,"PushEvent":21,"PullRequestReviewEvent":4,"PullRequestReviewCommentEvent":3,"PullRequestEvent":5,"ForkEvent":2},"last_year":{"CreateEvent":7,"CommitCommentEvent":2,"ReleaseEvent":2,"IssuesEvent":1,"WatchEvent":3,"DeleteEvent":1,"IssueCommentEvent":11,"PushEvent":21,"PullRequestReviewEvent":4,"PullRequestReviewCommentEvent":3,"PullRequestEvent":5,"ForkEvent":2}},"keywords":["bam","bam-files","bam-format","bioinformatics","biojulia","sam","sam-files","sam-format"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/Documentation.yml","sha":null,"kind":"manifest","created_at":"2023-02-08T08:30:34.954Z","updated_at":"2023-02-08T08:30:34.954Z","repository_link":"https://github.com/BioJulia/XAM.jl/blob/develop/.github/workflows/Documentation.yml","dependencies":[{"id":7445385093,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7445385097,"package_name":"julia-actions/julia-buildpkg","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7445385099,"package_name":"julia-actions/julia-docdeploy","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/TagBot.yml","sha":null,"kind":"manifest","created_at":"2023-02-08T08:30:35.000Z","updated_at":"2023-02-08T08:30:35.000Z","repository_link":"https://github.com/BioJulia/XAM.jl/blob/develop/.github/workflows/TagBot.yml","dependencies":[{"id":7445385277,"package_name":"JuliaRegistries/TagBot","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/UnitTests.yml","sha":null,"kind":"manifest","created_at":"2023-02-08T08:30:35.037Z","updated_at":"2023-02-08T08:30:35.037Z","repository_link":"https://github.com/BioJulia/XAM.jl/blob/develop/.github/workflows/UnitTests.yml","dependencies":[{"id":7445385289,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7445385290,"package_name":"julia-actions/setup-julia","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7445385291,"package_name":"julia-actions/julia-runtest","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7445385292,"package_name":"julia-actions/julia-processcoverage","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7445385293,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]}],"score":11.05516656214093,"created_at":"2025-09-09T00:27:57.227Z","updated_at":"2025-10-07T08:37:20.743Z","avatar_url":"https://github.com/BioJulia.png","language":"Julia","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":["https://opencollective.com/biojulia"],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["biology","biological-sequences","pipelines","workflows","numerics"],"project_url":"https://science.ecosyste.ms/api/v1/projects/149673","html_url":"https://science.ecosyste.ms/projects/149673"}