{"id":149728,"name":null,"description":null,"url":"https://github.com/biojulia/indexes.jl","last_synced_at":"2025-09-09T15:15:31.907Z","repository":{"id":49571854,"uuid":"152190026","full_name":"BioJulia/Indexes.jl","owner":"BioJulia","description":null,"archived":false,"fork":false,"pushed_at":"2025-04-27T01:19:12.000Z","size":252,"stargazers_count":3,"open_issues_count":6,"forks_count":4,"subscribers_count":9,"default_branch":"develop","last_synced_at":"2025-08-24T15:38:13.237Z","etag":null,"topics":["tabix"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioJulia.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":".github/FUNDING.yml","license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null},"funding":{"open_collective":"biojulia"}},"created_at":"2018-10-09T04:58:39.000Z","updated_at":"2025-04-26T12:02:10.000Z","dependencies_parsed_at":"2022-08-29T19:00:19.130Z","dependency_job_id":"7db21006-7ab3-4d92-8819-6c086875b647","html_url":"https://github.com/BioJulia/Indexes.jl","commit_stats":{"total_commits":39,"total_committers":3,"mean_commits":13.0,"dds":0.05128205128205132,"last_synced_commit":"0f82c88c27acf08fccc4afe2c09ef9f6667a4007"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/BioJulia/Indexes.jl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316665,"owners_count":25262710,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BioJulia","name":"BioJulia","uuid":"6486271","kind":"organization","description":"Bioinformatics and Computational Biology in Julia","email":null,"website":"https://biojulia.dev","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6486271?v=4","repositories_count":79,"last_synced_at":"2024-10-30T00:01:04.629Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioJulia","funding_links":[],"total_stars":1652,"followers":218,"following":0,"created_at":"2022-11-03T07:06:10.033Z","updated_at":"2024-10-30T00:01:04.629Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia/repositories"},"packages":[{"id":4315580,"name":"Indexes","ecosystem":"julia","description":"","homepage":"","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/BioJulia/Indexes.jl","keywords_array":["tabix"],"namespace":null,"versions_count":5,"first_release_published_at":"2020-02-20T10:28:15.000Z","latest_release_published_at":"2021-11-27T10:37:03.000Z","latest_release_number":"0.2.0","last_synced_at":"2025-08-24T10:48:36.961Z","created_at":"2022-04-19T16:37:10.817Z","updated_at":"2025-08-24T11:11:31.145Z","registry_url":"https://juliahub.com/ui/Packages/General/Indexes/","install_command":"Pkg.add(\"Indexes\")","documentation_url":"https://docs.juliahub.com/General/Indexes/stable/","metadata":{"uuid":"4ffb77ac-cb80-11e8-1b35-4b78cc642f6d"},"repo_metadata":{"id":49571854,"uuid":"152190026","full_name":"BioJulia/Indexes.jl","owner":"BioJulia","description":null,"archived":false,"fork":false,"pushed_at":"2025-04-27T01:19:12.000Z","size":252,"stargazers_count":3,"open_issues_count":6,"forks_count":4,"subscribers_count":9,"default_branch":"develop","last_synced_at":"2025-07-31T07:37:17.029Z","etag":null,"topics":["tabix"],"latest_commit_sha":null,"homepage":"","language":"Julia","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BioJulia.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":".github/FUNDING.yml","license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null},"funding":{"open_collective":"biojulia"}},"created_at":"2018-10-09T04:58:39.000Z","updated_at":"2025-04-26T12:02:10.000Z","dependencies_parsed_at":"2022-08-29T19:00:19.130Z","dependency_job_id":"7db21006-7ab3-4d92-8819-6c086875b647","html_url":"https://github.com/BioJulia/Indexes.jl","commit_stats":{"total_commits":39,"total_committers":3,"mean_commits":13.0,"dds":0.05128205128205132,"last_synced_commit":"0f82c88c27acf08fccc4afe2c09ef9f6667a4007"},"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/BioJulia/Indexes.jl","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/refs/heads/develop","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271851563,"owners_count":24834014,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-24T02:00:11.135Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"BioJulia","name":"BioJulia","uuid":"6486271","kind":"organization","description":"Bioinformatics and Computational Biology in Julia","email":null,"website":"https://biojulia.dev","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6486271?v=4","repositories_count":79,"last_synced_at":"2024-10-30T00:01:04.629Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BioJulia","funding_links":[],"total_stars":1652,"followers":218,"following":0,"created_at":"2022-11-03T07:06:10.033Z","updated_at":"2024-10-30T00:01:04.629Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BioJulia/repositories"},"tags":[{"name":"v0.2.0","sha":"ccba7adc69f497437bd47a8384506d7aab75a30a","kind":"tag","published_at":"2021-11-27T10:37:03.000Z","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/v0.2.0","html_url":"https://github.com/BioJulia/Indexes.jl/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioJulia/Indexes.jl@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.2.0/manifests"},{"name":"v0.1.3","sha":"a331bed09178074b275a7d852c174c90f4fe3f46","kind":"commit","published_at":"2021-03-04T14:42:09.000Z","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/v0.1.3","html_url":"https://github.com/BioJulia/Indexes.jl/releases/tag/v0.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioJulia/Indexes.jl@v0.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.3/manifests"},{"name":"v0.1.2","sha":"1d90f6cafcad0bc67878a81aaf1892f4a23dff46","kind":"commit","published_at":"2021-03-04T11:48:45.000Z","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/v0.1.2","html_url":"https://github.com/BioJulia/Indexes.jl/releases/tag/v0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioJulia/Indexes.jl@v0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.2/manifests"},{"name":"v0.1.1","sha":"d81dcdc3425ae9e4779977965e6fd9f437b6ad6e","kind":"tag","published_at":"2020-06-21T00:05:57.000Z","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/v0.1.1","html_url":"https://github.com/BioJulia/Indexes.jl/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioJulia/Indexes.jl@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.1/manifests"},{"name":"v0.1.0","sha":"881ef49be71c2d4ed12d66d9b8844ea3b293dea4","kind":"commit","published_at":"2020-02-20T10:28:15.000Z","download_url":"https://codeload.github.com/BioJulia/Indexes.jl/tar.gz/v0.1.0","html_url":"https://github.com/BioJulia/Indexes.jl/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/BioJulia/Indexes.jl@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/tags/v0.1.0/manifests"}]},"repo_metadata_updated_at":"2025-08-24T11:11:31.145Z","dependent_packages_count":3,"downloads":283,"downloads_period":"total","dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":9.939726027397262,"dependent_packages_count":13.161643835616438,"stargazers_count":58.104109589041094,"forks_count":24.504109589041096,"average":26.427397260273974},"purl":"pkg:julia/Indexes","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/julia/Indexes","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/julia/Indexes","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/julia/Indexes/dependencies","status":null,"funding_links":["https://opencollective.com/biojulia"],"critical":false,"issue_metadata":{"last_synced_at":"2025-07-24T09:56:33.600Z","issues_count":4,"pull_requests_count":8,"avg_time_to_close_issue":13278255.5,"avg_time_to_close_pull_request":679327.75,"issues_closed_count":2,"pull_requests_closed_count":4,"pull_request_authors_count":5,"issue_authors_count":3,"avg_comments_per_issue":7.25,"avg_comments_per_pull_request":0.375,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":2,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/issues","maintainers":[{"login":"CiaranOMara","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/CiaranOMara"},{"login":"jakobnissen","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jakobnissen"},{"login":"MillironX","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MillironX"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/Indexes/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/Indexes/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/Indexes/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages/Indexes/related_packages","maintainers":[],"registry":{"name":"juliahub.com","url":"https://juliahub.com","ecosystem":"julia","default":true,"packages_count":12698,"maintainers_count":0,"namespaces_count":0,"keywords_count":7444,"github":"JuliaRegistries","metadata":{"funded_packages_count":856},"icon_url":"https://github.com/JuliaRegistries.png","created_at":"2022-04-19T16:34:08.340Z","updated_at":"2025-09-09T06:56:17.241Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/juliahub.com/namespaces"}}],"commits":{"id":706344,"full_name":"BioJulia/Indexes.jl","default_branch":"develop","committers":[{"name":"Ciarán O'Mara","email":"Ciaran.OMara@utas.edu.au","login":"CiaranOMara","count":29},{"name":"Ciarán O'Mara","email":"ciaran@omara.id.au","login":null,"count":1}],"total_commits":30,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":15.0,"dds":0.033333333333333326,"past_year_committers":[{"name":"Ciarán O’Mara","email":"Ciaran.OMara@utas.edu.au","login":"CiaranOMara","count":2},{"name":"Ciarán O'Mara","email":"ciaran@omara.id.au","login":null,"count":1}],"past_year_total_commits":3,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.5,"past_year_dds":0.33333333333333337,"last_synced_at":"2025-07-01T07:25:36.156Z","last_synced_commit":"8b053c1a29a7210537e0525b372bbae5177ae2fb","created_at":"2023-03-09T12:18:43.983Z","updated_at":"2025-07-01T07:25:36.157Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5525813,"commits_count":868589080,"contributors_count":31964088,"owners_count":917266,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"BioJulia/Indexes.jl","html_url":"https://github.com/BioJulia/Indexes.jl","last_synced_at":"2025-08-24T11:33:39.055Z","status":"error","issues_count":4,"pull_requests_count":8,"avg_time_to_close_issue":13278255.5,"avg_time_to_close_pull_request":679327.75,"issues_closed_count":2,"pull_requests_closed_count":4,"pull_request_authors_count":5,"issue_authors_count":3,"avg_comments_per_issue":7.25,"avg_comments_per_pull_request":0.375,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":2,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":2,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-10T15:39:45.001Z","updated_at":"2025-08-31T02:46:02.149Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BioJulia%2FIndexes.jl/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":3,"MEMBER":1},"pull_request_author_associations_count":{"MEMBER":5,"NONE":5},"issue_authors":{"rulixxx":2,"jakobnissen":1,"JuliaTagBot":1},"pull_request_authors":{"github-actions[bot]":4,"CiaranOMara":3,"Marlin-Na":1,"MillironX":1,"jakobnissen":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10080101,"issues_count":31302547,"pull_requests_count":96106713,"authors_count":10693105,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":4},"past_year_issue_authors":{},"past_year_pull_request_authors":{"github-actions[bot]":4},"maintainers":[{"login":"CiaranOMara","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/CiaranOMara"},{"login":"jakobnissen","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jakobnissen"},{"login":"MillironX","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MillironX"}],"active_maintainers":[]},"events":{"total":{"DeleteEvent":1,"PushEvent":5,"PullRequestEvent":2,"CreateEvent":7},"last_year":{"DeleteEvent":1,"PushEvent":5,"PullRequestEvent":2,"CreateEvent":7}},"keywords":["tabix"],"dependencies":[],"score":8.546363568716018,"created_at":"2025-09-09T00:27:57.380Z","updated_at":"2025-10-07T08:37:21.395Z","avatar_url":"https://github.com/BioJulia.png","language":"Julia","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":["https://opencollective.com/biojulia"],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/149728","html_url":"https://science.ecosyste.ms/projects/149728"}