{"id":149813,"name":null,"description":"A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.","url":"https://github.com/biomedsciai/histocartography","last_synced_at":"2025-09-09T15:16:22.547Z","repository":{"id":44791125,"uuid":"224401765","full_name":"BiomedSciAI/histocartography","owner":"BiomedSciAI","description":"A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.","archived":false,"fork":false,"pushed_at":"2023-12-23T15:08:07.000Z","size":185766,"stargazers_count":258,"open_issues_count":22,"forks_count":59,"subscribers_count":5,"default_branch":"main","last_synced_at":"2025-08-23T02:40:36.590Z","etag":null,"topics":["deep-learning","graph-neural-networks","healthcare","machine-learning","pathology","pytorch"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"agpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BiomedSciAI.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2019-11-27T10:10:55.000Z","updated_at":"2025-08-08T12:24:02.000Z","dependencies_parsed_at":"2024-06-19T17:37:14.132Z","dependency_job_id":"944c785a-b295-46ed-ad36-4fe4b410cf0f","html_url":"https://github.com/BiomedSciAI/histocartography","commit_stats":{"total_commits":1744,"total_committers":15,"mean_commits":"116.26666666666667","dds":0.6743119266055047,"last_synced_commit":"dcad24866331bce4fb3d79b0565f23aec0001511"},"previous_names":["histocartography/histocartography"],"tags_count":11,"template":false,"template_full_name":null,"purl":"pkg:github/BiomedSciAI/histocartography","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BiomedSciAI","download_url":"https://codeload.github.com/BiomedSciAI/histocartography/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274316665,"owners_count":25262710,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BiomedSciAI","name":"BiomedSciAI","uuid":"108874137","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/108874137?v=4","repositories_count":6,"last_synced_at":"2025-04-09T00:01:46.123Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BiomedSciAI","funding_links":[],"total_stars":null,"followers":64,"following":0,"created_at":"2022-11-14T07:08:13.784Z","updated_at":"2025-04-09T00:01:46.123Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BiomedSciAI","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BiomedSciAI/repositories"},"packages":[],"commits":{"id":592676,"full_name":"BiomedSciAI/histocartography","default_branch":"main","committers":[{"name":"Guillaume Jaume","email":"gja@zurich.ibm.com","login":"code-for-papers","count":617},{"name":"Valentin Anklin","email":"ANV@zurich.ibm.com","login":null,"count":568},{"name":"Antonio Foncubierta Rodriguez","email":"fra@zurich.ibm.com","login":"afoncubierta","count":236},{"name":"guillaumjaume","email":"guillaume.jaume@epfl.ch","login":null,"count":154},{"name":"Lauren","email":"frd@zurich.ibm.com","login":null,"count":57},{"name":"pus","email":"pus@zurich.ibm.com","login":null,"count":53},{"name":"Sonali","email":"son@github.ibm.com","login":null,"count":25},{"name":"Pushpak Pati","email":"pushpak.nitrkl@gmail.com","login":"pushpak-pati","count":14},{"name":"Kevin Thandiackal","email":"k.thandiackal@gmail.com","login":"kevthan","count":13},{"name":"Lauren Alisha Fernandes","email":"frd@moth.zurich.ibm.com","login":null,"count":5},{"name":"sam-zurich","email":"sam@zurich.ibm.com","login":null,"count":2},{"name":"Patricio Astudillo","email":"patricio.j.astudillo@gmail.com","login":"patricio-astudillo","count":1}],"total_commits":1745,"total_committers":12,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":145.41666666666666,"dds":0.6464183381088825,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-05-23T17:19:14.401Z","last_synced_commit":"5ec422092adbc2aae2cde3dbcbd4b28dca6685e2","created_at":"2023-03-09T06:25:38.372Z","updated_at":"2025-05-23T17:19:14.402Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-28T00:00:20.468Z","repositories_count":5479765,"commits_count":853309686,"contributors_count":31095220,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"BiomedSciAI/histocartography","html_url":"https://github.com/BiomedSciAI/histocartography","last_synced_at":"2025-08-23T02:15:04.450Z","status":"error","issues_count":37,"pull_requests_count":22,"avg_time_to_close_issue":10392455.95,"avg_time_to_close_pull_request":115541.29411764706,"issues_closed_count":20,"pull_requests_closed_count":17,"pull_request_authors_count":9,"issue_authors_count":32,"avg_comments_per_issue":1.7027027027027026,"avg_comments_per_pull_request":0.13636363636363635,"merged_pull_requests_count":16,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T15:28:05.796Z","updated_at":"2025-09-01T16:26:12.600Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/BiomedSciAI%2Fhistocartography/issues","issue_labels_count":{},"pull_request_labels_count":{"enhancement":1},"issue_author_associations_count":{"NONE":37},"pull_request_author_associations_count":{"CONTRIBUTOR":12,"COLLABORATOR":5,"NONE":4},"issue_authors":{"Ramxnan":3,"hossam-zaki":2,"CarlinLiao":2,"akhila1729":2,"Extord1108":1,"yangyang117":1,"sina1303":1,"Abbas009":1,"VolodymyrChapman":1,"PeterrHH":1,"spencerkrichevsky":1,"JiangWenJie-stack":1,"jiaqiwu1999":1,"Parisa-Boodaghi":1,"WxpHB":1,"NeelKanwal":1,"DanishSyedM":1,"luiscarm9":1,"crobbins327":1,"elliewith":1,"tikboaHIT":1,"caodoanh2001":1,"wang101":1,"EncinasAlar":1,"xiaofochai":1,"pfunami":1,"pablo-mas":1,"esratepe":1,"krishnakanagal":1,"ajinkya-kulkarni":1,"SaharAlmahfouzNasser":1,"innerones":1},"pull_request_authors":{"afoncubierta":7,"guillaumejaume":4,"kevthan":4,"ChrisBtt":1,"amirkasaei":1,"patricio-astudillo":1,"crobbins327":1,"kaczmarj":1,"PushpakPati":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10103789,"issues_count":31523126,"pull_requests_count":97734489,"authors_count":10703676,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"kevthan","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kevthan"},{"login":"PushpakPati","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/PushpakPati"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":21,"IssueCommentEvent":5,"ForkEvent":2},"last_year":{"WatchEvent":21,"IssueCommentEvent":5,"ForkEvent":2}},"keywords":["deep-learning","graph-neural-networks","healthcare","machine-learning","pathology","pytorch"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-26T18:31:39.303Z","updated_at":"2022-09-26T18:31:39.303Z","repository_link":"https://github.com/BiomedSciAI/histocartography/blob/main/requirements.txt","dependencies":[{"id":6139572334,"package_name":"torch","ecosystem":"pypi","requirements":"==1.3.1","direct":true,"kind":"runtime","optional":false},{"id":6139572335,"package_name":"tqdm","ecosystem":"pypi","requirements":"\u003e=4.35.0","direct":true,"kind":"runtime","optional":false},{"id":6139572336,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=0.24.2","direct":true,"kind":"runtime","optional":false},{"id":6139572337,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=3.1.1","direct":true,"kind":"runtime","optional":false},{"id":6139572338,"package_name":"h5py","ecosystem":"pypi","requirements":"\u003e=2.9.0","direct":true,"kind":"runtime","optional":false},{"id":6139572339,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"\u003e=0.22","direct":true,"kind":"runtime","optional":false},{"id":6139572340,"package_name":"seaborn","ecosystem":"pypi","requirements":"\u003e=0.9.0","direct":true,"kind":"runtime","optional":false},{"id":6139572341,"package_name":"torchvision","ecosystem":"pypi","requirements":"==0.4.0","direct":true,"kind":"runtime","optional":false},{"id":6139572342,"package_name":"pillow","ecosystem":"pypi","requirements":"\u003e=7.2.0","direct":true,"kind":"runtime","optional":false},{"id":6139572343,"package_name":"opencv-python","ecosystem":"pypi","requirements":"\u003e=3.4.8.29","direct":true,"kind":"runtime","optional":false},{"id":6139572344,"package_name":"scikit-image","ecosystem":"pypi","requirements":"\u003e=0.17.2","direct":true,"kind":"runtime","optional":false},{"id":6139572345,"package_name":"dgl","ecosystem":"pypi","requirements":"==0.4.3.post2","direct":true,"kind":"runtime","optional":false},{"id":6139572346,"package_name":"PyYAML","ecosystem":"pypi","requirements":"\u003e=5.1.2","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2024-06-19T17:37:09.916Z","updated_at":"2024-06-19T17:37:09.916Z","repository_link":"https://github.com/BiomedSciAI/histocartography/blob/main/environment.yml","dependencies":[{"id":18696602290,"package_name":"pip","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":18696602291,"package_name":"python","ecosystem":"conda","requirements":"3.9","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2024-06-19T17:37:10.055Z","updated_at":"2024-06-19T17:37:10.055Z","repository_link":"https://github.com/BiomedSciAI/histocartography/blob/main/setup.py","dependencies":[]}],"score":8.11969625295725,"created_at":"2025-09-09T00:28:12.100Z","updated_at":"2025-10-07T08:37:22.697Z","avatar_url":"https://github.com/BiomedSciAI.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/149813","html_url":"https://science.ecosyste.ms/projects/149813"}