{"id":15124,"name":"piqmie","description":"Proteomics Identifications \u0026 Quantitations Data Management \u0026 Integration Service","url":"https://github.com/arnikz/piqmie","last_synced_at":"2025-09-04T22:41:13.970Z","repository":{"id":55152542,"uuid":"42406525","full_name":"arnikz/PIQMIe","owner":"arnikz","description":"Proteomics Identifications \u0026 Quantitations Data Management \u0026 Integration Service","archived":false,"fork":false,"pushed_at":"2025-01-31T15:52:25.000Z","size":98382,"stargazers_count":1,"open_issues_count":2,"forks_count":0,"subscribers_count":1,"default_branch":"master","last_synced_at":"2025-07-11T15:48:42.899Z","etag":null,"topics":["data-analysis","data-management","data-visualisation","mass-spectrometry","peptide-identification","protein-inference","protein-quantification","proteomics","silac","web-application"],"latest_commit_sha":null,"homepage":"https://www.research-software.nl/software/piqmie","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/arnikz.png","metadata":{"files":{"readme":"README.md","changelog":"CHANGELOG.md","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2015-09-13T17:57:03.000Z","updated_at":"2025-01-28T10:27:33.000Z","dependencies_parsed_at":"2025-04-12T04:29:34.550Z","dependency_job_id":null,"html_url":"https://github.com/arnikz/PIQMIe","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/arnikz/PIQMIe","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2FPIQMIe","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2FPIQMIe/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2FPIQMIe/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2FPIQMIe/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/arnikz","download_url":"https://codeload.github.com/arnikz/PIQMIe/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2FPIQMIe/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273685335,"owners_count":25149719,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"arnikz","name":"Arnold Kuzniar","uuid":"7456848","kind":"user","description":"","email":"","website":"https://orcid.org/0000-0003-1711-7961","location":"Milky Way","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/7456848?u=f8f6d0d7b44123b5afd62766bb2f3ea8ade846cc\u0026v=4","repositories_count":2,"last_synced_at":"2023-10-20T01:12:13.925Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/arnikz","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-10-20T01:12:13.936Z","updated_at":"2023-10-20T01:12:13.936Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/arnikz","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/arnikz/repositories"},"packages":[],"commits":{"id":10566877,"full_name":"arnikz/piqmie","default_branch":"master","committers":[{"name":"arnikz","email":"arnold.kuzniar@gmail.com","login":"arnikz","count":50},{"name":"Arnold Kuzniar","email":"a.kuzniar@esciencecenter.nl","login":null,"count":41}],"total_commits":91,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":45.5,"dds":0.4505494505494505,"past_year_committers":[{"name":"arnikz","email":"arnold.kuzniar@gmail.com","login":"arnikz","count":36}],"past_year_total_commits":36,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":36.0,"past_year_dds":0.0,"last_synced_at":"2025-07-11T15:18:18.836Z","last_synced_commit":"33d7b5dcd9d8488c19cca9e394e5b12af41ee596","created_at":"2025-07-11T15:17:59.336Z","updated_at":"2025-07-11T15:18:22.325Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2Fpiqmie/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"arnikz/piqmie","html_url":"https://github.com/arnikz/piqmie","last_synced_at":"2025-08-31T14:38:37.740Z","status":null,"issues_count":5,"pull_requests_count":2,"avg_time_to_close_issue":51094182.333333336,"avg_time_to_close_pull_request":128386350.0,"issues_closed_count":3,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":0.2,"avg_comments_per_pull_request":0.5,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-07-11T15:18:04.820Z","updated_at":"2025-09-02T07:00:42.410Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2Fpiqmie","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/arnikz%2Fpiqmie/issues","issue_labels_count":{"bug":2,"enhancement":2},"pull_request_labels_count":{"dependencies":2},"issue_author_associations_count":{"OWNER":5},"pull_request_author_associations_count":{"NONE":2},"issue_authors":{"arnikz":5},"pull_request_authors":{"dependabot[bot]":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10082445,"issues_count":31251663,"pull_requests_count":96134747,"authors_count":10694148,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"OWNER":1},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"arnikz":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"arnikz","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/arnikz"}],"active_maintainers":[{"login":"arnikz","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/arnikz"}]},"events":{"total":{"IssuesEvent":1,"WatchEvent":2,"DeleteEvent":2,"IssueCommentEvent":1,"PushEvent":5,"PullRequestEvent":1},"last_year":{"IssuesEvent":1,"WatchEvent":2,"DeleteEvent":2,"IssueCommentEvent":1,"PushEvent":5,"PullRequestEvent":1}},"keywords":["data-analysis","data-management","data-visualisation","mass-spectrometry","peptide-identification","protein-inference","protein-quantification","proteomics","silac","web-application"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-14T13:40:14.010Z","updated_at":"2022-08-14T13:40:14.010Z","repository_link":"https://github.com/arnikz/PIQMIe/blob/master/requirements.txt","dependencies":[{"id":1552067816,"package_name":"cherrypy","ecosystem":"pypi","requirements":"\u003e=3.2.2","direct":true,"kind":"runtime","optional":false},{"id":1552067817,"package_name":"genshi","ecosystem":"pypi","requirements":"\u003e=0.7","direct":true,"kind":"runtime","optional":false},{"id":1552067818,"package_name":"cairosvg","ecosystem":"pypi","requirements":"==1.0.22","direct":true,"kind":"runtime","optional":false},{"id":1552067819,"package_name":"python-magic","ecosystem":"pypi","requirements":"\u003e=0.4.3","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yaml","sha":null,"kind":"manifest","created_at":"2024-09-13T04:25:00.845Z","updated_at":"2024-09-13T04:25:00.845Z","repository_link":"https://github.com/arnikz/PIQMIe/blob/master/.github/workflows/ci.yaml","dependencies":[{"id":20113635375,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/docker-build.yaml","sha":null,"kind":"manifest","created_at":"2024-09-13T04:25:01.377Z","updated_at":"2024-09-13T04:25:01.377Z","repository_link":"https://github.com/arnikz/PIQMIe/blob/master/.github/workflows/docker-build.yaml","dependencies":[{"id":20113635378,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":20113635379,"package_name":"docker/login-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2024-09-13T04:25:01.786Z","updated_at":"2024-09-13T04:25:01.786Z","repository_link":"https://github.com/arnikz/PIQMIe/blob/master/Dockerfile","dependencies":[{"id":20113635383,"package_name":"node","ecosystem":"docker","requirements":"13-alpine","direct":true,"kind":"build","optional":false}]},{"ecosystem":"npm","filepath":"package.json","sha":null,"kind":"manifest","created_at":"2024-09-13T04:25:02.098Z","updated_at":"2024-09-13T04:25:02.098Z","repository_link":"https://github.com/arnikz/PIQMIe/blob/master/package.json","dependencies":[{"id":20113635388,"package_name":"bootstrap","ecosystem":"npm","requirements":"^3.0.0","direct":true,"kind":"runtime","optional":false},{"id":20113635389,"package_name":"d3","ecosystem":"npm","requirements":"^4.0.0","direct":true,"kind":"runtime","optional":false},{"id":20113635390,"package_name":"jqGrid","ecosystem":"npm","requirements":"^5.3.2","direct":true,"kind":"runtime","optional":false},{"id":20113635391,"package_name":"jquery","ecosystem":"npm","requirements":"^1.11","direct":true,"kind":"runtime","optional":false},{"id":20113635392,"package_name":"jquery-ui","ecosystem":"npm","requirements":"^1.14","direct":true,"kind":"runtime","optional":false},{"id":20113635393,"package_name":"jquery-form","ecosystem":"npm","requirements":"^4.2.2","direct":true,"kind":"runtime","optional":false},{"id":20113635394,"package_name":"jquery-validation","ecosystem":"npm","requirements":"^1.19.1","direct":true,"kind":"runtime","optional":false}]}],"score":1.791759469228055,"created_at":"2025-09-04T15:50:46.047Z","updated_at":"2025-10-07T08:08:19.498Z","avatar_url":"https://github.com/arnikz.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.594144","https://doi.org/10.1093/nar/gku478","https://doi.org/10.1038/nbt.1511","https://doi.org/10.1021/pr101065j"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/15124","html_url":"https://science.ecosyste.ms/projects/15124"}