{"id":154139,"name":null,"description":"Tools to generate flatmaps of brain atlases \u0026 code to add barrel and barrel column annotations to Allen Mouse CCFv3","url":"https://github.com/bluebrain/atlas-enhancement","last_synced_at":"2025-09-09T16:13:21.415Z","repository":{"id":224937338,"uuid":"753641843","full_name":"BlueBrain/atlas-enhancement","owner":"BlueBrain","description":"Tools to generate flatmaps of brain atlases \u0026 code to add barrel and barrel column annotations to Allen Mouse CCFv3","archived":true,"fork":false,"pushed_at":"2025-02-26T13:16:41.000Z","size":17297,"stargazers_count":2,"open_issues_count":1,"forks_count":4,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-05-14T05:33:45.383Z","etag":null,"topics":["neuroinformatics","neuroscience"],"latest_commit_sha":null,"homepage":"","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/BlueBrain.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"authors.txt","dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-02-06T14:22:49.000Z","updated_at":"2025-02-26T13:16:46.000Z","dependencies_parsed_at":"2024-04-30T21:41:57.264Z","dependency_job_id":"d10ad0f5-d952-4561-b906-d5c6aad3b4ea","html_url":"https://github.com/BlueBrain/atlas-enhancement","commit_stats":null,"previous_names":["bluebrain/atlas-enhancement"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/BlueBrain/atlas-enhancement","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2Fatlas-enhancement","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2Fatlas-enhancement/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2Fatlas-enhancement/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2Fatlas-enhancement/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BlueBrain","download_url":"https://codeload.github.com/BlueBrain/atlas-enhancement/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BlueBrain%2Fatlas-enhancement/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274323385,"owners_count":25264070,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"BlueBrain","name":"The Blue Brain Project","uuid":"1479142","kind":"organization","description":"Open Source Software produced and used by the Blue Brain Project","email":"bbp.opensource@epfl.ch","website":"https://portal.bluebrain.epfl.ch/","location":"Geneva, Switzerland","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/1479142?v=4","repositories_count":226,"last_synced_at":"2024-04-14T20:55:00.562Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/BlueBrain","funding_links":[],"total_stars":3017,"followers":166,"following":0,"created_at":"2022-11-03T07:59:55.020Z","updated_at":"2024-04-14T20:55:45.907Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BlueBrain","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/BlueBrain/repositories"},"packages":[],"commits":{"id":6259418,"full_name":"bluebrain/atlas-enhancement","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-19T01:26:01.042Z","updated_at":"2024-11-19T01:26:01.042Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bluebrain%2Fatlas-enhancement/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5526922,"commits_count":869095884,"contributors_count":31986430,"owners_count":917436,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"bluebrain/atlas-enhancement","html_url":"https://github.com/bluebrain/atlas-enhancement","last_synced_at":"2024-11-19T01:26:04.054Z","status":null,"issues_count":0,"pull_requests_count":5,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":694986.75,"issues_closed_count":0,"pull_requests_closed_count":4,"pull_request_authors_count":5,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":4,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":5,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":694986.75,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":5,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":1,"past_year_merged_pull_requests_count":4,"created_at":"2024-11-19T01:26:01.662Z","updated_at":"2025-09-01T15:36:04.127Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bluebrain%2Fatlas-enhancement","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bluebrain%2Fatlas-enhancement/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":1},"issue_author_associations_count":{},"pull_request_author_associations_count":{"COLLABORATOR":3,"MEMBER":2,"NONE":2},"issue_authors":{},"pull_request_authors":{"alTeska":2,"seirios":2,"dependabot[bot]":1,"abisi":1,"MWolfR":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9966144,"issues_count":29680459,"pull_requests_count":86440165,"authors_count":9648275,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"alTeska","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/alTeska"},{"login":"seirios","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/seirios"},{"login":"MWolfR","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MWolfR"}],"active_maintainers":[]},"events":{"total":{"PushEvent":1,"ForkEvent":1},"last_year":{"PushEvent":1,"ForkEvent":1}},"keywords":["neuroinformatics","neuroscience"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-02-28T14:36:45.231Z","updated_at":"2024-02-28T14:36:45.231Z","repository_link":"https://github.com/BlueBrain/atlas-enhancement/blob/main/requirements.txt","dependencies":[{"id":16500522188,"package_name":"atlas_splitter","ecosystem":"pypi","requirements":"==0.1.2.dev30","direct":true,"kind":"runtime","optional":false},{"id":16500523767,"package_name":"blueetl","ecosystem":"pypi","requirements":"==0.4.0","direct":true,"kind":"runtime","optional":false},{"id":16500523883,"package_name":"colorcet","ecosystem":"pypi","requirements":"==3.0.1","direct":true,"kind":"runtime","optional":false},{"id":16500523884,"package_name":"cmcrameri","ecosystem":"pypi","requirements":"==1.8","direct":true,"kind":"runtime","optional":false},{"id":16500524056,"package_name":"datashader","ecosystem":"pypi","requirements":"==0.16.0","direct":true,"kind":"runtime","optional":false},{"id":16500525263,"package_name":"hexalattice","ecosystem":"pypi","requirements":"==1.3.0","direct":true,"kind":"runtime","optional":false},{"id":16500526035,"package_name":"joblib","ecosystem":"pypi","requirements":"==1.3.2","direct":true,"kind":"runtime","optional":false},{"id":16500526036,"package_name":"lmfit","ecosystem":"pypi","requirements":"==1.2.2","direct":true,"kind":"runtime","optional":false},{"id":16500527018,"package_name":"matplotlib","ecosystem":"pypi","requirements":"==3.7.0","direct":true,"kind":"runtime","optional":false},{"id":16500527019,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.24.2","direct":true,"kind":"runtime","optional":false},{"id":16500527020,"package_name":"pandas","ecosystem":"pypi","requirements":"==1.5.3","direct":true,"kind":"runtime","optional":false},{"id":16500527021,"package_name":"scikit-spatial","ecosystem":"pypi","requirements":"==7.2.0","direct":true,"kind":"runtime","optional":false},{"id":16500527025,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.12.0","direct":true,"kind":"runtime","optional":false},{"id":16500527026,"package_name":"seaborn","ecosystem":"pypi","requirements":"==0.13.2","direct":true,"kind":"runtime","optional":false},{"id":16500527027,"package_name":"Shapely","ecosystem":"pypi","requirements":"==2.0.2","direct":true,"kind":"runtime","optional":false},{"id":16500527231,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.64.1","direct":true,"kind":"runtime","optional":false},{"id":16500527232,"package_name":"voxcell","ecosystem":"pypi","requirements":"==3.1.3","direct":true,"kind":"runtime","optional":false},{"id":16500527250,"package_name":"xarray","ecosystem":"pypi","requirements":"==2023.2.0","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-09T00:37:45.485Z","updated_at":"2025-10-07T08:37:49.411Z","avatar_url":"https://github.com/BlueBrain.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/154139","html_url":"https://science.ecosyste.ms/projects/154139"}