{"id":15712,"name":"mpbr","description":"Population Genomics Analysis for Plasmodium falciparum","url":"https://github.com/karim-mane/mpbr","last_synced_at":"2025-09-04T22:57:02.968Z","repository":{"id":186945424,"uuid":"676024935","full_name":"Karim-Mane/mpbr","owner":"Karim-Mane","description":"Population Genomics Analysis for Plasmodium falciparum","archived":false,"fork":false,"pushed_at":"2024-11-02T13:09:02.000Z","size":89039,"stargazers_count":0,"open_issues_count":13,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-12T06:19:17.993Z","etag":null,"topics":["malaria","population-dynamics","population-genetics","population-genomics"],"latest_commit_sha":null,"homepage":"https://karim-mane.github.io/mpbr/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Karim-Mane.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-08-08T09:03:54.000Z","updated_at":"2024-10-19T13:03:07.000Z","dependencies_parsed_at":"2024-11-13T20:59:41.472Z","dependency_job_id":null,"html_url":"https://github.com/Karim-Mane/mpbr","commit_stats":null,"previous_names":["karim-mane/mpbr"],"tags_count":0,"template":false,"template_full_name":"epiverse-trace/packagetemplate","purl":"pkg:github/Karim-Mane/mpbr","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Karim-Mane%2Fmpbr","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Karim-Mane%2Fmpbr/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Karim-Mane%2Fmpbr/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Karim-Mane%2Fmpbr/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Karim-Mane","download_url":"https://codeload.github.com/Karim-Mane/mpbr/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Karim-Mane%2Fmpbr/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273685596,"owners_count":25149722,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Karim-Mane","name":"Karim MANE","uuid":"84502011","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/84502011?u=228e2c85d83394cc284f3a0ebdcd644e4b926e45\u0026v=4","repositories_count":3,"last_synced_at":"2023-05-11T18:34:45.792Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Karim-Mane","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-05-11T18:34:45.795Z","updated_at":"2023-05-11T18:34:45.795Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Karim-Mane","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Karim-Mane/repositories"},"packages":[],"commits":{"id":5557508,"full_name":"karim-mane/mpbr","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-13T20:49:24.753Z","updated_at":"2024-11-13T20:49:24.753Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/karim-mane%2Fmpbr/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"karim-mane/mpbr","html_url":"https://github.com/karim-mane/mpbr","last_synced_at":"2025-03-02T21:45:54.446Z","status":null,"issues_count":23,"pull_requests_count":5,"avg_time_to_close_issue":13216902.727272727,"avg_time_to_close_pull_request":4571868.5,"issues_closed_count":11,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":0.5217391304347826,"avg_comments_per_pull_request":0.4,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":12,"past_year_pull_requests_count":5,"past_year_avg_time_to_close_issue":6085737.6,"past_year_avg_time_to_close_pull_request":4571868.5,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":0.3333333333333333,"past_year_avg_comments_per_pull_request":0.4,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":2,"created_at":"2024-11-13T20:49:28.887Z","updated_at":"2025-09-02T14:29:08.586Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/karim-mane%2Fmpbr","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/karim-mane%2Fmpbr/issues","issue_labels_count":{"enhancement":6,"documentation":2},"pull_request_labels_count":{"enhancement":4,"good first issue":1},"issue_author_associations_count":{"OWNER":18,"COLLABORATOR":3},"pull_request_author_associations_count":{"OWNER":7,"COLLABORATOR":2},"issue_authors":{"Karim-Mane":18,"BrandonNgwa":3},"pull_request_authors":{"Karim-Mane":7,"BrandonNgwa":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10042729,"issues_count":30645220,"pull_requests_count":91402388,"authors_count":10443886,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"enhancement":4,"good first issue":1},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"OWNER":6,"COLLABORATOR":2},"past_year_issue_authors":{},"past_year_pull_request_authors":{"Karim-Mane":6,"BrandonNgwa":2},"maintainers":[{"login":"Karim-Mane","count":25,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Karim-Mane"},{"login":"BrandonNgwa","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/BrandonNgwa"}],"active_maintainers":[{"login":"Karim-Mane","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Karim-Mane"},{"login":"BrandonNgwa","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/BrandonNgwa"}]},"events":{"total":{"IssuesEvent":2,"DeleteEvent":2,"IssueCommentEvent":3,"PushEvent":6,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":2,"PullRequestEvent":4,"CreateEvent":1},"last_year":{"IssuesEvent":2,"DeleteEvent":2,"IssueCommentEvent":3,"PushEvent":6,"PullRequestReviewCommentEvent":1,"PullRequestReviewEvent":2,"PullRequestEvent":4,"CreateEvent":1}},"keywords":["malaria","population-dynamics","population-genetics","population-genomics"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/R-CMD-check.yaml","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:50.061Z","updated_at":"2023-08-08T11:26:50.061Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/R-CMD-check.yaml","dependencies":[{"id":12394113744,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12394113745,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394113746,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394113747,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394113748,"package_name":"r-lib/actions/check-r-package","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yaml","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:50.420Z","updated_at":"2023-08-08T11:26:50.420Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/pkgdown.yaml","dependencies":[{"id":12394115675,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12394115678,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394115680,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394115682,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394115684,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"4.1.4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/render_readme.yml","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:50.874Z","updated_at":"2023-08-08T11:26:50.874Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/render_readme.yml","dependencies":[{"id":12394118668,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12394118672,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394118675,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394118677,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test-coverage.yaml","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:51.048Z","updated_at":"2023-08-08T11:26:51.048Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/test-coverage.yaml","dependencies":[{"id":12394119103,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12394119104,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394119105,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/update-citation-cff.yaml","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:51.343Z","updated_at":"2023-08-08T11:26:51.343Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/update-citation-cff.yaml","dependencies":[{"id":12394120397,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":12394120398,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":12394120399,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2023-08-08T11:26:51.798Z","updated_at":"2023-08-08T11:26:51.798Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/DESCRIPTION","dependencies":[{"id":12394120979,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12394120980,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12394120981,"package_name":"spelling","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":12394120982,"package_name":"testthat","ecosystem":"cran","requirements":"\u003e= 3.0.0","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/lint-changed-files.yaml","sha":null,"kind":"manifest","created_at":"2024-05-29T18:09:03.558Z","updated_at":"2024-05-29T18:09:03.558Z","repository_link":"https://github.com/Karim-Mane/mpbr/blob/main/.github/workflows/lint-changed-files.yaml","dependencies":[{"id":18293884728,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":18293884729,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":18293884730,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]}],"score":null,"created_at":"2025-09-04T15:50:46.674Z","updated_at":"2025-10-07T08:08:30.848Z","avatar_url":"https://github.com/Karim-Mane.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/15712","html_url":"https://science.ecosyste.ms/projects/15712"}