{"id":157696,"name":null,"description":"Integrate Any Omics: Towards genome-wide data integration for patient stratification","url":"https://github.com/bowang-lab/integrao","last_synced_at":"2025-09-09T17:19:57.286Z","repository":{"id":208692400,"uuid":"721764456","full_name":"bowang-lab/IntegrAO","owner":"bowang-lab","description":"Integrate Any Omics: Towards genome-wide data integration for patient stratification","archived":false,"fork":false,"pushed_at":"2025-05-19T18:47:24.000Z","size":16156,"stargazers_count":56,"open_issues_count":1,"forks_count":11,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-08-24T23:40:59.367Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://www.nature.com/articles/s42256-024-00942-3","language":"Jupyter Notebook","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bowang-lab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-11-21T18:16:56.000Z","updated_at":"2025-08-08T20:23:46.000Z","dependencies_parsed_at":"2024-09-14T08:26:56.242Z","dependency_job_id":"18356642-5f29-4b59-8757-74b7ea93f92a","html_url":"https://github.com/bowang-lab/IntegrAO","commit_stats":null,"previous_names":["bowang-lab/integrao"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/bowang-lab/IntegrAO","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2FIntegrAO","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2FIntegrAO/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2FIntegrAO/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2FIntegrAO/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bowang-lab","download_url":"https://codeload.github.com/bowang-lab/IntegrAO/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2FIntegrAO/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274331631,"owners_count":25265622,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":null,"packages":null,"commits":{"id":8104872,"full_name":"bowang-lab/integrao","default_branch":"main","committers":[{"name":"Rex Ma","email":"rexma1102@gmail.com","login":"rexxxx1234","count":51},{"name":"npunw","email":"neil_punwasi@hotmail.com","login":"npunw","count":3},{"name":"michaelhla","email":"michaelhla@college.harvard.edu","login":null,"count":1}],"total_commits":55,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":18.333333333333332,"dds":0.07272727272727275,"past_year_committers":[{"name":"Rex Ma","email":"rexma1102@gmail.com","login":"rexxxx1234","count":22},{"name":"npunw","email":"neil_punwasi@hotmail.com","login":"npunw","count":3},{"name":"michaelhla","email":"michaelhla@college.harvard.edu","login":null,"count":1}],"past_year_total_commits":26,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":8.666666666666666,"past_year_dds":0.15384615384615385,"last_synced_at":"2025-05-25T20:49:20.926Z","last_synced_commit":"5be3f4a46a1a4739ddf737008e1164783f48c37a","created_at":"2025-01-01T22:15:34.920Z","updated_at":"2025-05-25T20:49:20.926Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2Fintegrao/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5529727,"commits_count":869758936,"contributors_count":32026149,"owners_count":917914,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"bowang-lab/integrao","html_url":"https://github.com/bowang-lab/integrao","last_synced_at":"2025-08-31T17:04:58.497Z","status":null,"issues_count":7,"pull_requests_count":7,"avg_time_to_close_issue":1033752.0,"avg_time_to_close_pull_request":9.428571428571429,"issues_closed_count":7,"pull_requests_closed_count":7,"pull_request_authors_count":2,"issue_authors_count":5,"avg_comments_per_issue":3.2857142857142856,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":7,"past_year_avg_time_to_close_issue":1033752.0,"past_year_avg_time_to_close_pull_request":9.428571428571429,"past_year_issues_closed_count":7,"past_year_pull_requests_closed_count":7,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":5,"past_year_avg_comments_per_issue":3.2857142857142856,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":7,"created_at":"2025-01-01T22:15:35.263Z","updated_at":"2025-09-03T04:49:29.207Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2Fintegrao","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bowang-lab%2Fintegrao/issues","issue_labels_count":{"enhancement":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":7},"pull_request_author_associations_count":{"CONTRIBUTOR":7,"COLLABORATOR":5},"issue_authors":{"marioernestovaldes":3,"kjh-sdfmu":1,"Dadatata-JZ":1,"LudensZhang":1,"liux0614":1},"pull_request_authors":{"rexxxx1234":7,"npunw":5},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-06T00:00:15.144Z","repositories_count":10116192,"issues_count":31648915,"pull_requests_count":98479227,"authors_count":10708464,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"enhancement":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":7},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":7,"COLLABORATOR":5},"past_year_issue_authors":{"marioernestovaldes":3,"Dadatata-JZ":1,"kjh-sdfmu":1,"liux0614":1,"LudensZhang":1},"past_year_pull_request_authors":{"rexxxx1234":7,"npunw":5},"maintainers":[{"login":"npunw","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/npunw"}],"active_maintainers":[{"login":"npunw","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/npunw"}]},"events":{"total":{"CreateEvent":4,"ReleaseEvent":1,"IssuesEvent":13,"WatchEvent":47,"DeleteEvent":1,"IssueCommentEvent":19,"MemberEvent":1,"PushEvent":25,"PullRequestEvent":14,"ForkEvent":11},"last_year":{"CreateEvent":4,"ReleaseEvent":1,"IssuesEvent":13,"WatchEvent":47,"DeleteEvent":1,"IssueCommentEvent":19,"MemberEvent":1,"PushEvent":25,"PullRequestEvent":14,"ForkEvent":11}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2023-11-23T23:40:58.383Z","updated_at":"2023-11-23T23:40:58.383Z","repository_link":"https://github.com/bowang-lab/IntegrAO/blob/main/pyproject.toml","dependencies":[{"id":14690561551,"package_name":"python","ecosystem":"pypi","requirements":"^3.9","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirement.txt","sha":null,"kind":"manifest","created_at":"2023-11-23T23:40:58.452Z","updated_at":"2023-11-23T23:40:58.452Z","repository_link":"https://github.com/bowang-lab/IntegrAO/blob/main/requirement.txt","dependencies":[{"id":14690561558,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14690561559,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14690561560,"package_name":"snfpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14690561562,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14690561563,"package_name":"torch","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":14690561564,"package_name":"torchvision","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":5.14166355650266,"created_at":"2025-09-09T00:48:43.386Z","updated_at":"2025-10-07T08:38:05.204Z","avatar_url":"https://github.com/bowang-lab.png","language":"Jupyter Notebook","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/157696","html_url":"https://science.ecosyste.ms/projects/157696"}