{"id":158471,"name":null,"description":"Automated 3D brain registration in napari with support for multiple species and atlases. ","url":"https://github.com/brainglobe/brainreg-napari","last_synced_at":"2025-09-09T17:34:04.919Z","repository":{"id":37433334,"uuid":"382366859","full_name":"brainglobe/brainreg-napari","owner":"brainglobe","description":"Automated 3D brain registration in napari with support for multiple species and atlases. ","archived":true,"fork":false,"pushed_at":"2024-01-05T10:58:29.000Z","size":119,"stargazers_count":16,"open_issues_count":0,"forks_count":6,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-07-05T09:46:59.253Z","etag":null,"topics":["anatomy","atlases","brain","microscopy","napari","neuroscience","registration"],"latest_commit_sha":null,"homepage":"https://brainglobe.info/documentation/brainreg/index.html","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/brainglobe.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.CFF","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2021-07-02T14:11:40.000Z","updated_at":"2025-04-09T10:18:54.000Z","dependencies_parsed_at":"2023-02-18T08:30:53.782Z","dependency_job_id":"21541c8e-de46-4c38-855b-308974c9667d","html_url":"https://github.com/brainglobe/brainreg-napari","commit_stats":{"total_commits":82,"total_committers":6,"mean_commits":"13.666666666666666","dds":0.6341463414634146,"last_synced_commit":"68c369eb8db019c1571ba29740a37d1cdc5879f5"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/brainglobe/brainreg-napari","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/sbom","scorecard":{"id":250690,"data":{"date":"2025-08-11","repo":{"name":"github.com/brainglobe/brainreg-napari","commit":"d9f042d2a32b32def95dea8abcb76c6c69a54122"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":4.6,"checks":[{"name":"Code-Review","score":8,"reason":"Found 13/15 approved changesets -- score normalized to 8","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Maintained","score":0,"reason":"project is archived","details":["Warn: Repository is archived."],"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:40: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:41: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:52: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:60: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/test_and_deploy.yml:64: update your workflow using https://app.stepsecurity.io/secureworkflow/brainglobe/brainreg-napari/test_and_deploy.yml/main?enable=pin","Info:   0 out of   1 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   6 third-party GitHubAction dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/test_and_deploy.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: MIT License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 29 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-17T08:24:24.392Z","repository_id":37433334,"created_at":"2025-08-17T08:24:24.392Z","updated_at":"2025-08-17T08:24:24.392Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274334059,"owners_count":25266130,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"brainglobe","name":"BrainGlobe","uuid":"64580400","kind":"organization","description":"Open python tools for morphological analyses in systems neuroscience","email":null,"website":"https://brainglobe.info/","location":"London/Munich","twitter":"brain_globe","company":null,"icon_url":"https://avatars.githubusercontent.com/u/64580400?v=4","repositories_count":28,"last_synced_at":"2023-03-04T04:44:38.657Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/brainglobe","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T09:42:25.367Z","updated_at":"2023-03-04T04:44:38.668Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe/repositories"},"packages":[{"id":2660440,"name":"brainreg-napari","ecosystem":"pypi","description":"Multi-atlas whole-brain microscopy registration","homepage":null,"licenses":"BSD-3-Clause","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/brainglobe/brainreg-napari","keywords_array":[],"namespace":null,"versions_count":12,"first_release_published_at":"2021-07-13T17:35:34.000Z","latest_release_published_at":"2024-01-05T10:59:31.000Z","latest_release_number":"0.1.4","last_synced_at":"2025-08-06T10:06:28.820Z","created_at":"2022-04-10T10:14:48.896Z","updated_at":"2025-08-06T10:06:28.820Z","registry_url":"https://pypi.org/project/brainreg-napari/","install_command":"pip install brainreg-napari --index-url https://pypi.org/simple","documentation_url":"https://brainreg-napari.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","Intended Audience :: Developers","Intended Audience :: Science/Research","Operating System :: OS Independent","Programming Language :: Python","Programming Language :: Python :: 3","Programming Language :: Python :: 3.10","Programming Language :: Python :: 3.11","Programming Language :: Python :: 3.9","Topic :: Scientific/Engineering :: Image Recognition"],"normalized_name":"brainreg-napari"},"repo_metadata":{"id":37433334,"uuid":"382366859","full_name":"brainglobe/brainreg-napari","owner":"brainglobe","description":"Automated 3D brain registration in napari with support for multiple species and atlases. ","archived":true,"fork":false,"pushed_at":"2024-01-05T10:58:29.000Z","size":119,"stargazers_count":16,"open_issues_count":0,"forks_count":6,"subscribers_count":4,"default_branch":"main","last_synced_at":"2025-05-27T10:57:47.456Z","etag":null,"topics":["anatomy","atlases","brain","microscopy","napari","neuroscience","registration"],"latest_commit_sha":null,"homepage":"https://brainglobe.info/documentation/brainreg/index.html","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/brainglobe.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.CFF","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2021-07-02T14:11:40.000Z","updated_at":"2025-04-09T10:18:54.000Z","dependencies_parsed_at":"2023-02-18T08:30:53.782Z","dependency_job_id":"21541c8e-de46-4c38-855b-308974c9667d","html_url":"https://github.com/brainglobe/brainreg-napari","commit_stats":{"total_commits":82,"total_committers":6,"mean_commits":"13.666666666666666","dds":0.6341463414634146,"last_synced_commit":"68c369eb8db019c1571ba29740a37d1cdc5879f5"},"previous_names":[],"tags_count":15,"template":false,"template_full_name":null,"purl":"pkg:github/brainglobe/brainreg-napari","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263722902,"owners_count":23501476,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"brainglobe","name":"BrainGlobe","uuid":"64580400","kind":"organization","description":"Open python tools for morphological analyses in systems neuroscience","email":null,"website":"https://brainglobe.info/","location":"London/Munich","twitter":"brain_globe","company":null,"icon_url":"https://avatars.githubusercontent.com/u/64580400?v=4","repositories_count":28,"last_synced_at":"2023-03-04T04:44:38.657Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/brainglobe","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-14T09:42:25.367Z","updated_at":"2023-03-04T04:44:38.668Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe/repositories"},"tags":[{"name":"v0.1.4","sha":"d9f042d2a32b32def95dea8abcb76c6c69a54122","kind":"commit","published_at":"2024-01-05T10:54:38.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.4","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.4/manifests"},{"name":"v0.1.3","sha":"321bb87818151b4301e045d69d9a94910769503a","kind":"commit","published_at":"2023-11-06T12:26:27.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.3","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.3/manifests"},{"name":"v0.1.2","sha":"d6d24c2f71aec3970855f1b74d5618879b6332bf","kind":"tag","published_at":"2023-08-24T09:31:39.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.2","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.2/manifests"},{"name":"0.1.2rc0","sha":"1ce4fd2d213d8d5a164778e6e5bb54f00a576c91","kind":"tag","published_at":"2023-03-21T10:40:21.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.1.2rc0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.1.2rc0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.1.2rc0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.1.2rc0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.1.2rc0/manifests"},{"name":"v0.1.0","sha":"f1ba83cdbaba1c4e730d3a7f664c9be1f1075219","kind":"tag","published_at":"2022-12-06T10:21:35.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0/manifests"},{"name":"v0.1.1","sha":"f1ba83cdbaba1c4e730d3a7f664c9be1f1075219","kind":"commit","published_at":"2022-12-06T10:20:38.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.1","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.1/manifests"},{"name":"v0.1.0rc1","sha":"25e80e7937d2ccefec2f552d145f30efd24d994d","kind":"tag","published_at":"2022-12-06T09:32:43.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.0rc1","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.0rc1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.0rc1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0rc1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0rc1/manifests"},{"name":"v0.1.0rc0","sha":"9afc51c43ff4917a5f3a48b21da9dae1dd7ef4e8","kind":"tag","published_at":"2022-12-06T09:07:56.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/v0.1.0rc0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/v0.1.0rc0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@v0.1.0rc0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0rc0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/v0.1.0rc0/manifests"},{"name":"0.0.5-rc1","sha":"bb680a5632559aec8b9a1cf9fc696366022a5647","kind":"tag","published_at":"2022-12-05T19:47:45.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.5-rc1","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.5-rc1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.5-rc1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.5-rc1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.5-rc1/manifests"},{"name":"0.0.5-rc0","sha":"2bf7d9ef9984a034705d73655e6c90c82ee26399","kind":"commit","published_at":"2022-06-29T10:30:23.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.5-rc0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.5-rc0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.5-rc0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.5-rc0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.5-rc0/manifests"},{"name":"0.0.4-rc0","sha":"9fde7e6f86f5a99b38b926f419e0000cbe6116e1","kind":"tag","published_at":"2021-08-04T15:03:59.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.4-rc0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.4-rc0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.4-rc0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.4-rc0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.4-rc0/manifests"},{"name":"0.0.3-rc0","sha":"4ec17f208b4357fb5d76b84ca976b5efea142c06","kind":"tag","published_at":"2021-08-02T15:13:10.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.3-rc0","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.3-rc0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.3-rc0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.3-rc0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.3-rc0/manifests"},{"name":"0.0.2-rc3","sha":"c30edca23fdbf7f9e633dde4f78fdc32c9c0e713","kind":"tag","published_at":"2021-07-19T12:58:46.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.2-rc3","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.2-rc3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.2-rc3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc3/manifests"},{"name":"0.0.2-rc2","sha":"1523814244a00e968eaf6ba14b5c9f0b69a7a62e","kind":"tag","published_at":"2021-07-19T12:49:58.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.2-rc2","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.2-rc2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.2-rc2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc2/manifests"},{"name":"0.0.2-rc1","sha":"ebb3df769b88aaca920d53d887f58e50a014383a","kind":"tag","published_at":"2021-07-19T10:49:43.000Z","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/0.0.2-rc1","html_url":"https://github.com/brainglobe/brainreg-napari/releases/tag/0.0.2-rc1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/brainglobe/brainreg-napari@0.0.2-rc1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags/0.0.2-rc1/manifests"}]},"repo_metadata_updated_at":"2025-07-05T09:47:01.267Z","dependent_packages_count":2,"downloads":93,"downloads_period":"last-month","dependent_repos_count":0,"rankings":{"downloads":21.034648691373675,"dependent_repos_count":67.895784226593,"dependent_packages_count":3.0706838855270377,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":30.6670389344979},"purl":"pkg:pypi/brainreg-napari","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/brainreg-napari","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/brainreg-napari","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/brainreg-napari/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/brainreg-napari/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/brainreg-napari/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/brainreg-napari/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/brainreg-napari/related_packages","maintainers":[{"uuid":"adamltyson","login":"adamltyson","name":null,"email":null,"url":null,"packages_count":38,"html_url":"https://pypi.org/user/adamltyson/","role":null,"created_at":"2023-02-23T18:07:31.364Z","updated_at":"2023-02-23T18:07:31.364Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/adamltyson/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726644,"maintainers_count":308880,"namespaces_count":0,"keywords_count":238369,"github":"pypi","metadata":{"funded_packages_count":50594},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-09T06:31:19.922Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}},{"id":8799794,"name":"github.com/brainglobe/brainreg-napari","ecosystem":"go","description":null,"homepage":null,"licenses":"mit","normalized_licenses":["MIT"],"repository_url":"https://github.com/brainglobe/brainreg-napari","keywords_array":[],"namespace":null,"versions_count":5,"first_release_published_at":"2022-12-06T10:20:38.000Z","latest_release_published_at":"2024-01-05T10:54:38.000Z","latest_release_number":"v0.1.4","last_synced_at":"2025-08-27T10:36:33.551Z","created_at":"2024-01-24T05:41:40.980Z","updated_at":"2025-08-27T10:36:33.552Z","registry_url":"https://pkg.go.dev/github.com/brainglobe/brainreg-napari","install_command":"go get github.com/brainglobe/brainreg-napari","documentation_url":"https://pkg.go.dev/github.com/brainglobe/brainreg-napari#section-documentation","metadata":{},"repo_metadata":{"uuid":"382366859","full_name":"brainglobe/brainreg-napari","owner":"brainglobe","description":"Automated 3D brain registration in napari with support for multiple species and atlases. ","archived":true,"fork":false,"pushed_at":"2024-01-05T10:58:29.000Z","size":119,"stargazers_count":11,"open_issues_count":0,"forks_count":6,"subscribers_count":5,"default_branch":"main","last_synced_at":"2024-01-09T20:09:22.881Z","etag":null,"topics":["anatomy","atlases","brain","microscopy","napari","neuroscience","registration"],"latest_commit_sha":null,"homepage":"https://brainglobe.info/documentation/brainreg/index.html","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/brainglobe.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.CFF","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null}},"created_at":"2021-07-02T14:11:40.000Z","updated_at":"2024-01-05T10:58:40.000Z","dependencies_parsed_at":"2023-02-18T08:30:53.782Z","dependency_job_id":"21541c8e-de46-4c38-855b-308974c9667d","html_url":"https://github.com/brainglobe/brainreg-napari","commit_stats":{"total_commits":82,"total_committers":6,"mean_commits":"13.666666666666666","dds":0.6341463414634146,"last_synced_commit":"68c369eb8db019c1571ba29740a37d1cdc5879f5"},"previous_names":[],"tags_count":15,"template":null,"template_full_name":null,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/brainglobe","download_url":"https://codeload.github.com/brainglobe/brainreg-napari/tar.gz/refs/heads/main","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":182464305,"owners_count":11240955,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"repo_metadata_updated_at":"2024-01-24T05:54:27.228Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":10.203841068845398,"dependent_packages_count":9.049219470518674,"stargazers_count":null,"forks_count":null,"docker_downloads_count":null,"average":9.626530269682036},"purl":"pkg:golang/github.com/brainglobe/brainreg-napari","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/go/github.com/brainglobe/brainreg-napari","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/go/github.com/brainglobe/brainreg-napari","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/go/github.com/brainglobe/brainreg-napari/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":null,"versions_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fbrainglobe%2Fbrainreg-napari/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fbrainglobe%2Fbrainreg-napari/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fbrainglobe%2Fbrainreg-napari/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages/github.com%2Fbrainglobe%2Fbrainreg-napari/related_packages","maintainers":[],"registry":{"name":"proxy.golang.org","url":"https://proxy.golang.org","ecosystem":"go","default":true,"packages_count":1954770,"maintainers_count":0,"namespaces_count":741920,"keywords_count":109374,"github":"golang","metadata":{"funded_packages_count":49379},"icon_url":"https://github.com/golang.png","created_at":"2022-04-04T15:19:22.939Z","updated_at":"2025-09-09T06:45:13.065Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/proxy.golang.org/namespaces"}}],"commits":{"id":545122,"full_name":"brainglobe/brainreg-napari","default_branch":"main","committers":[{"name":"David Stansby","email":"dstansby@gmail.com","count":30},{"name":"stephen","email":"stephen.lenzi@gmail.com","count":29},{"name":"Adam Tyson","email":"code@adamltyson.com","count":20},{"name":"Adam Tyson","email":"adam.tyson@ucl.ac.uk","count":1},{"name":"Justin Kiggins","email":"justin.kiggins@gmail.com","count":1},{"name":"Simão Bolota","email":"99416933+SimaoBolota-MetaCell@users.noreply.github.com","count":1}],"total_commits":82,"total_committers":6,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":13.666666666666666,"dds":0.6341463414634146,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":"2023-03-17T22:52:20.519Z","last_synced_commit":"68c369eb8db019c1571ba29740a37d1cdc5879f5","created_at":"2023-03-09T04:23:33.319Z","updated_at":"2023-09-19T17:14:20.728Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-07T00:00:09.744Z","repositories_count":5480019,"commits_count":853389126,"contributors_count":31098155,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"brainglobe/brainreg-napari","html_url":"https://github.com/brainglobe/brainreg-napari","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T20:29:30.751Z","updated_at":"2025-08-31T20:29:30.751Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/brainglobe%2Fbrainreg-napari/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"MEMBER":1},"issue_authors":{},"pull_request_authors":{"adamltyson":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10196513,"issues_count":32251144,"pull_requests_count":101784504,"authors_count":10740740,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"adamltyson","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/adamltyson"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":1},"last_year":{"WatchEvent":1}},"keywords":["anatomy","atlases","brain","microscopy","napari","neuroscience","registration"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/plugin_preview.yml","sha":null,"kind":"manifest","created_at":"2023-01-29T21:25:12.070Z","updated_at":"2023-01-29T21:25:12.070Z","repository_link":"https://github.com/brainglobe/brainreg-napari/blob/main/.github/workflows/plugin_preview.yml","dependencies":[{"id":7232070515,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7232070516,"package_name":"chanzuckerberg/napari-hub-preview-action","ecosystem":"actions","requirements":"v0.1","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/test_and_deploy.yml","sha":null,"kind":"manifest","created_at":"2023-01-29T21:25:12.116Z","updated_at":"2023-01-29T21:25:12.116Z","repository_link":"https://github.com/brainglobe/brainreg-napari/blob/main/.github/workflows/test_and_deploy.yml","dependencies":[{"id":7232070517,"package_name":"neuroinformatics-unit/actions/lint","ecosystem":"actions","requirements":"v1.2.0","direct":true,"kind":"composite","optional":false},{"id":7232070518,"package_name":"neuroinformatics-unit/actions/check_manifest","ecosystem":"actions","requirements":"v1.2.0","direct":true,"kind":"composite","optional":false},{"id":7232070519,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7232070520,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":7232070521,"package_name":"tlambert03/setup-qt-libs","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7232070522,"package_name":"GabrielBB/xvfb-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":7232070523,"package_name":"codecov/codecov-action","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7232070524,"package_name":"neuroinformatics-unit/actions/build_sdist_wheels","ecosystem":"actions","requirements":"main","direct":true,"kind":"composite","optional":false},{"id":7232070525,"package_name":"actions/download-artifact","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7232070526,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"v1.5.0","direct":true,"kind":"composite","optional":false}]}],"score":9.128696382935672,"created_at":"2025-09-09T00:50:42.214Z","updated_at":"2025-10-07T08:38:12.445Z","avatar_url":"https://github.com/brainglobe.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":93,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1038/s41598-021-04676-9","https://doi.org/10.1038/ncomms11879","https://doi.org/10.21105/joss.02668"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["imaging","cell-detection","image-analysis","neuroanatomy","napari-plugin","brainreg","cellfinder","loading","nifti","saving"],"project_url":"https://science.ecosyste.ms/api/v1/projects/158471","html_url":"https://science.ecosyste.ms/projects/158471","bibtex_url":"https://science.ecosyste.ms/projects/158471/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/158471/export.apalike"}