{"id":160741,"name":null,"description":"Official code repository for GATK versions 4 and up","url":"https://github.com/broadinstitute/gatk","last_synced_at":"2025-09-09T18:12:48.333Z","repository":{"id":24066560,"uuid":"27452807","full_name":"broadinstitute/gatk","owner":"broadinstitute","description":"Official code repository for GATK versions 4 and up","archived":false,"fork":false,"pushed_at":"2025-09-05T16:52:42.000Z","size":485902,"stargazers_count":1847,"open_issues_count":1404,"forks_count":614,"subscribers_count":157,"default_branch":"master","last_synced_at":"2025-09-06T02:44:12.415Z","etag":null,"topics":["bioinformatics","dna","gatk","genome","genomics","ngs","science","sequencing","spark"],"latest_commit_sha":null,"homepage":"https://software.broadinstitute.org/gatk","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.TXT","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2014-12-02T20:50:36.000Z","updated_at":"2025-09-05T02:03:47.000Z","dependencies_parsed_at":"2023-01-14T13:30:50.647Z","dependency_job_id":"c6d6c1bd-f22b-4afe-ae44-08e6fb9d6845","html_url":"https://github.com/broadinstitute/gatk","commit_stats":{"total_commits":3651,"total_committers":145,"mean_commits":"25.179310344827588","dds":0.8666118871542043,"last_synced_commit":"b409f777ddabb55bbaaf70b969cdb85d4269ac6d"},"previous_names":["broadinstitute/hellbender"],"tags_count":67,"template":false,"template_full_name":null,"purl":"pkg:github/broadinstitute/gatk","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/sbom","scorecard":{"id":113190,"data":{"date":"2025-08-11","repo":{"name":"github.com/broadinstitute/gatk","commit":"342c5ca3adc78e50ab2cc948c71a5ae64574b4ce"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6,"checks":[{"name":"Code-Review","score":9,"reason":"Found 26/28 approved changesets -- score normalized to 9","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"13 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/carrot_run_test_from_pr_comment.yml:1","Warn: topLevel 'contents' permission set to 'write': .github/workflows/dependency_submission.yml:8","Warn: no topLevel permission defined: .github/workflows/gatk-nightly-docker.yml:1","Warn: no topLevel permission defined: .github/workflows/gatk-tests.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE.TXT:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":9,"reason":"binaries present in source code","details":["Warn: binary detected: gradle/wrapper/gradle-wrapper.jar:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact 4.6.2.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/95892670","Warn: release artifact 4.6.2.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/95892670"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/gatk-nightly-docker.yml:8"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Pinned-Dependencies","score":1,"reason":"dependency not pinned by hash detected -- score normalized to 1","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/carrot_run_test_from_pr_comment.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/carrot_run_test_from_pr_comment.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:22: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-nightly-docker.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-nightly-docker.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:298: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:305: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:49: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:59: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:67: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:89: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:94: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:107: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:119: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:163: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:170: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:178: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:191: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:207: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:251: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:256: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:272: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:277: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: containerImage not pinned by hash: Dockerfile:4","Warn: containerImage not pinned by hash: Dockerfile:32","Warn: containerImage not pinned by hash: Dockerfile:88","Warn: containerImage not pinned by hash: scripts/docker/gatkbase/Dockerfile:4: pin your Docker image by updating ubuntu:22.04 to ubuntu:22.04@sha256:1aa979d85661c488ce030ac292876cf6ed04535d3a237e49f61542d8e5de5ae0","Warn: containerImage not pinned by hash: scripts/mitochondria_m2_wdl/Haplochecker/Dockerfile:1","Info:   0 out of  16 GitHub-owned GitHubAction dependencies pinned","Info:   3 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   5 containerImage dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 28 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-15T16:34:36.929Z","repository_id":24066560,"created_at":"2025-08-15T16:34:36.929Z","updated_at":"2025-08-15T16:34:36.929Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274242992,"owners_count":25248148,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"packages":[{"id":4911100,"name":"org.broadinstitute:gatk-test-utils","ecosystem":"maven","description":"Development on GATK 4","homepage":"https://github.com/broadinstitute/gatk","licenses":"Apache 2.0","normalized_licenses":["Apache-2.0"],"repository_url":"https://github.com/broadinstitute/gatk","keywords_array":[],"namespace":"org.broadinstitute","versions_count":32,"first_release_published_at":"2018-09-25T21:03:09.000Z","latest_release_published_at":"2025-04-14T23:04:44.000Z","latest_release_number":"4.6.2.0","last_synced_at":"2025-09-09T04:12:03.834Z","created_at":"2022-07-27T00:35:38.115Z","updated_at":"2025-09-09T04:12:03.834Z","registry_url":"https://central.sonatype.com/artifact/org.broadinstitute/gatk-test-utils/","install_command":null,"documentation_url":"https://appdoc.app/artifact/org.broadinstitute/gatk-test-utils/","metadata":{},"repo_metadata":{"id":24066560,"uuid":"27452807","full_name":"broadinstitute/gatk","owner":"broadinstitute","description":"Official code repository for GATK versions 4 and up","archived":false,"fork":false,"pushed_at":"2025-09-05T16:52:42.000Z","size":485902,"stargazers_count":1847,"open_issues_count":1404,"forks_count":614,"subscribers_count":157,"default_branch":"master","last_synced_at":"2025-09-06T02:44:12.415Z","etag":null,"topics":["bioinformatics","dna","gatk","genome","genomics","ngs","science","sequencing","spark"],"latest_commit_sha":null,"homepage":"https://software.broadinstitute.org/gatk","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.TXT","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2014-12-02T20:50:36.000Z","updated_at":"2025-09-05T02:03:47.000Z","dependencies_parsed_at":"2023-01-14T13:30:50.647Z","dependency_job_id":"c6d6c1bd-f22b-4afe-ae44-08e6fb9d6845","html_url":"https://github.com/broadinstitute/gatk","commit_stats":{"total_commits":3651,"total_committers":145,"mean_commits":"25.179310344827588","dds":0.8666118871542043,"last_synced_commit":"b409f777ddabb55bbaaf70b969cdb85d4269ac6d"},"previous_names":["broadinstitute/hellbender"],"tags_count":67,"template":false,"template_full_name":null,"purl":"pkg:github/broadinstitute/gatk","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/sbom","scorecard":{"id":113190,"data":{"date":"2025-08-11","repo":{"name":"github.com/broadinstitute/gatk","commit":"342c5ca3adc78e50ab2cc948c71a5ae64574b4ce"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6,"checks":[{"name":"Code-Review","score":9,"reason":"Found 26/28 approved changesets -- score normalized to 9","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"13 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/carrot_run_test_from_pr_comment.yml:1","Warn: topLevel 'contents' permission set to 'write': .github/workflows/dependency_submission.yml:8","Warn: no topLevel permission defined: .github/workflows/gatk-nightly-docker.yml:1","Warn: no topLevel permission defined: .github/workflows/gatk-tests.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE.TXT:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":9,"reason":"binaries present in source code","details":["Warn: binary detected: gradle/wrapper/gradle-wrapper.jar:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact 4.6.2.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/95892670","Warn: release artifact 4.6.2.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/95892670"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/gatk-nightly-docker.yml:8"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Pinned-Dependencies","score":1,"reason":"dependency not pinned by hash detected -- score normalized to 1","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/carrot_run_test_from_pr_comment.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/carrot_run_test_from_pr_comment.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:22: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-nightly-docker.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-nightly-docker.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:298: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:305: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:49: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:59: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:67: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:89: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:94: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:107: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:119: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:163: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:170: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:178: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:191: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:207: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:251: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:256: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:272: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:277: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: containerImage not pinned by hash: Dockerfile:4","Warn: containerImage not pinned by hash: Dockerfile:32","Warn: containerImage not pinned by hash: Dockerfile:88","Warn: containerImage not pinned by hash: scripts/docker/gatkbase/Dockerfile:4: pin your Docker image by updating ubuntu:22.04 to ubuntu:22.04@sha256:1aa979d85661c488ce030ac292876cf6ed04535d3a237e49f61542d8e5de5ae0","Warn: containerImage not pinned by hash: scripts/mitochondria_m2_wdl/Haplochecker/Dockerfile:1","Info:   0 out of  16 GitHub-owned GitHubAction dependencies pinned","Info:   3 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   5 containerImage dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 28 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-15T16:34:36.929Z","repository_id":24066560,"created_at":"2025-08-15T16:34:36.929Z","updated_at":"2025-08-15T16:34:36.929Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273978886,"owners_count":25201417,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-06T02:00:13.247Z","response_time":2576,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"tags":[{"name":"AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","sha":"c6ebf216ae06c5dda2868013d65d4462717c33f9","kind":"commit","published_at":"2025-06-24T18:10:52.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","html_url":"https://github.com/broadinstitute/gatk/releases/tag/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes/manifests"},{"name":"FoxTrot_Tag20250520_1","sha":"7a6bb1e4a407285e763414f357000d96de98ea4b","kind":"tag","published_at":"2025-05-20T18:10:26.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/FoxTrot_Tag20250520_1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/FoxTrot_Tag20250520_1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@FoxTrot_Tag20250520_1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/FoxTrot_Tag20250520_1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/FoxTrot_Tag20250520_1/manifests"},{"name":"4.6.2.0","sha":"76edc75c26504da94bbaee66584e107e76ee15de","kind":"tag","published_at":"2025-04-13T17:10:03.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.2.0/manifests"},{"name":"4.6.1.0","sha":"02c87bfd0beda327aef45dbc6e2b122aca2fd439","kind":"tag","published_at":"2024-10-24T15:47:47.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.1.0/manifests"},{"name":"4.6.0.0","sha":"64348bc9750ebf6cc473ecb8c1ced3fc66f05488","kind":"tag","published_at":"2024-06-29T23:12:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.0.0/manifests"},{"name":"4.5.0.0","sha":"8317d8bdd86fc7e83d4a094be2197bd012afe838","kind":"tag","published_at":"2023-12-13T22:42:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.5.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.5.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.5.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.5.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.5.0.0/manifests"},{"name":"after_master_merge","sha":"41f19e8d18bab6c5663aecab310df4a3d59e1b46","kind":"commit","published_at":"2023-08-31T18:40:05.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/after_master_merge","html_url":"https://github.com/broadinstitute/gatk/releases/tag/after_master_merge","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@after_master_merge","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/after_master_merge","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/after_master_merge/manifests"},{"name":"before_master_merge","sha":"34ed02ea59bfff01c9b2c082f61a064589de971f","kind":"commit","published_at":"2023-08-31T12:51:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/before_master_merge","html_url":"https://github.com/broadinstitute/gatk/releases/tag/before_master_merge","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@before_master_merge","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/before_master_merge","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/before_master_merge/manifests"},{"name":"4.1.8.1.log4jfix","sha":"1f398d97faafa41d013d490c19ecb8e544775079","kind":"tag","published_at":"2023-05-05T18:36:11.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.1.log4jfix","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.1.log4jfix","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.1.log4jfix","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1.log4jfix","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1.log4jfix/manifests"},{"name":"4.4.0.0","sha":"2dbc025821bc5f686c423ff332a41e6cef892a77","kind":"tag","published_at":"2023-03-16T18:55:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.4.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.4.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.4.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.4.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.4.0.0/manifests"},{"name":"NVSCOREVARIANTS-PREVIEW","sha":"55d88f8053526df186d5eab552b674b438a23dbe","kind":"tag","published_at":"2022-10-21T19:09:31.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/NVSCOREVARIANTS-PREVIEW","html_url":"https://github.com/broadinstitute/gatk/releases/tag/NVSCOREVARIANTS-PREVIEW","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@NVSCOREVARIANTS-PREVIEW","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/NVSCOREVARIANTS-PREVIEW","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/NVSCOREVARIANTS-PREVIEW/manifests"},{"name":"4.3.0.0","sha":"8dbb78fe789a929a5d18645cc87bad621001797e","kind":"tag","published_at":"2022-10-13T01:04:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.3.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.3.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.3.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.3.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.3.0.0/manifests"},{"name":"4.2.6.1","sha":"33bda5e08b6a09b40a729ee525d2e3083e0ecdf8","kind":"tag","published_at":"2022-04-13T19:10:59.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.6.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.1/manifests"},{"name":"4.2.6.0","sha":"3b0bc0394911e1581eb5d4a6b3d9c89064220bd8","kind":"tag","published_at":"2022-04-08T19:15:10.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.0/manifests"},{"name":"4.2.5.0","sha":"da7cd8337e0a2b5b557f2dde9c86d163f727045d","kind":"tag","published_at":"2022-02-04T22:14:05.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.5.0/manifests"},{"name":"4.2.4.1","sha":"5b8736715724d6ba7994613acbc37e1bf187f538","kind":"tag","published_at":"2022-01-04T15:58:22.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.4.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.1/manifests"},{"name":"4.2.4.0","sha":"2d3d4aaf08c7cd51017c861b54882ff855a0b4ea","kind":"tag","published_at":"2021-12-15T17:44:28.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.0/manifests"},{"name":"4.2.3.0","sha":"f31f0198f78c7ae34add4b54602c48b4bc791dda","kind":"tag","published_at":"2021-11-02T21:46:48.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.3.0/manifests"},{"name":"4.2.2.0","sha":"cafc6ce29aaa4cd62e39bcfa661c04d8bf034bce","kind":"tag","published_at":"2021-08-18T23:57:47.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.2.0/manifests"},{"name":"4.2.1.0","sha":"9951f77c683b187213fb160eeb8ecd0ff2d25e16","kind":"tag","published_at":"2021-07-30T21:13:12.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.1.0/manifests"},{"name":"4.2.0.0","sha":"1f7fade2afbd706539eb983087907a0cb11ee734","kind":"tag","published_at":"2021-02-19T21:07:43.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.0.0/manifests"},{"name":"4.1.9.0","sha":"9d5727df8db3a475b1ba5f9bff6bc92a322f5633","kind":"tag","published_at":"2020-10-09T22:23:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.9.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.9.0/manifests"},{"name":"4.1.8.1","sha":"297f24e642b0181d9ec4150be693905a80ded68b","kind":"tag","published_at":"2020-07-20T21:04:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1/manifests"},{"name":"4.1.8.0","sha":"bc0994c180312cdca7afbe45b410b2c6fc312043","kind":"tag","published_at":"2020-06-26T19:05:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.0/manifests"},{"name":"4.1.7.0","sha":"4ec2a4b11783cd2bcb3c8998fc11d0f4a44171c9","kind":"tag","published_at":"2020-04-23T23:06:49.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.7.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.7.0/manifests"},{"name":"4.1.6.0","sha":"bdb2e15472481906f86b7dbec8a9c8e0f151c44b","kind":"tag","published_at":"2020-03-25T16:19:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.6.0/manifests"},{"name":"4.1.5.0","sha":"7f9b8491d4b8f43729278b6981554df95c95a9c6","kind":"tag","published_at":"2020-02-28T22:55:27.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.5.0/manifests"},{"name":"4.1.4.1","sha":"c61cb50a6c592fce15a67c13aa83a7d6f667dedb","kind":"tag","published_at":"2019-11-27T17:31:39.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.4.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.1/manifests"},{"name":"4.1.4.0","sha":"0a50314ef03701b067b7203c8ca3b18495587f47","kind":"tag","published_at":"2019-10-08T19:30:38.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.0/manifests"},{"name":"4.1.3.0","sha":"afc0e4445f11565809152bbbdc26302f0e239235","kind":"tag","published_at":"2019-08-09T19:14:24.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.3.0/manifests"},{"name":"4.1.2.0","sha":"fb16ae15f41a81b8f60fae829400afd987dbff9a","kind":"tag","published_at":"2019-04-23T17:27:31.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.2.0/manifests"},{"name":"4.1.1.0","sha":"ea3032d4860319256f454c1bfe7ebf7d484bb197","kind":"tag","published_at":"2019-03-28T22:52:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.1.0/manifests"},{"name":"4.1.0.0","sha":"335fac0133f782b1bde295a2c56e0e2dca8e3e58","kind":"tag","published_at":"2019-01-30T03:19:48.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.0.0/manifests"},{"name":"4.0.12.0","sha":"02682d54148af69c322e65cc3612b80463f1ec58","kind":"tag","published_at":"2018-12-17T18:40:43.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.12.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.12.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.12.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.12.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.12.0/manifests"},{"name":"4.0.11.0","sha":"5d95d60cd9e29e2cd3ba7bbabd6f996e377b72a0","kind":"tag","published_at":"2018-10-23T15:15:54.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.11.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.11.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.11.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.11.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.11.0/manifests"},{"name":"4.0.10.1","sha":"4dd7ba87d956e590bf5320036c1176921cf2e063","kind":"tag","published_at":"2018-10-09T19:01:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.10.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.1/manifests"},{"name":"4.0.10.0","sha":"7368c627f434e42b7a2a0aaf54ab046766654196","kind":"tag","published_at":"2018-10-03T22:31:22.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.10.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.10.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.10.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.0/manifests"},{"name":"4.0.9.0","sha":"6e352bb0599a6502f6520279896ee5cf8a8d4431","kind":"tag","published_at":"2018-09-20T17:05:32.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.9.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.9.0/manifests"},{"name":"4.0.8.1","sha":"bc983703202e76a8ba91f2e7f3b36d6d08865388","kind":"tag","published_at":"2018-08-16T19:25:04.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.8.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.1/manifests"},{"name":"4.0.8.0","sha":"1e98c6d02cefefbaa1a15db0aea64ea7518025fa","kind":"tag","published_at":"2018-08-14T20:15:15.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.8.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.0/manifests"},{"name":"4.0.7.0","sha":"b6a630ad1db986d6088293d55a6f8b96544ebb79","kind":"tag","published_at":"2018-07-30T18:33:19.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.7.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.7.0/manifests"},{"name":"4.0.6.0","sha":"d6a7fcd895677424b491df8c4ee6227e34b52251","kind":"tag","published_at":"2018-07-06T21:42:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.6.0/manifests"},{"name":"4.0.5.2","sha":"ee81df13de4915e9fd7d125b822101b3e464b642","kind":"tag","published_at":"2018-06-29T20:56:10.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.2/manifests"},{"name":"4.0.5.1","sha":"24b4f7b1a15e64b1cae55e773cb19f878f629618","kind":"tag","published_at":"2018-06-11T16:57:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.1/manifests"},{"name":"4.0.5.0","sha":"f4225b89a482d4e0b5a4f6542b1a59c392587516","kind":"tag","published_at":"2018-06-07T22:26:18.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.0/manifests"},{"name":"4.0.4.0","sha":"7641f53458f9e7c8426ecf23cfb7d74f9f94f21b","kind":"tag","published_at":"2018-04-26T15:20:59.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.4.0/manifests"},{"name":"4.0.3.0","sha":"6979f3760d72505ff3e5f96278d7a96db60d33e2","kind":"tag","published_at":"2018-03-27T20:35:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.3.0/manifests"},{"name":"4.0.2.1","sha":"8a7879020124a3ea4096adbd1c03b4889d72f80d","kind":"tag","published_at":"2018-03-02T19:14:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.2.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.1/manifests"},{"name":"4.0.2.0","sha":"2bb2f50996e5e826268145d426e8edd697f9a46f","kind":"tag","published_at":"2018-02-27T02:55:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.0/manifests"},{"name":"4.0.1.2","sha":"dbea0da698b7ca3ff78b0129758294638e74191e","kind":"tag","published_at":"2018-02-09T18:28:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.2/manifests"},{"name":"4.0.1.1","sha":"390274b3d0257998c464cab43a7b4758a6c6d9f2","kind":"tag","published_at":"2018-02-01T21:21:11.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.1/manifests"},{"name":"4.0.1.0","sha":"d6e7635897e1a6a773af5684511e2358d369af94","kind":"tag","published_at":"2018-01-30T18:13:29.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.0/manifests"},{"name":"4.0.0.0","sha":"1418c4a9ed26995586dcc3c621d8ad764adef778","kind":"tag","published_at":"2018-01-09T18:46:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.0.0/manifests"},{"name":"4.beta.6","sha":"fd8749d0aceec08b1cd4129cfebf78a635c1ae6c","kind":"tag","published_at":"2017-10-16T20:45:38.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.6","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.6/manifests"},{"name":"4.beta.5","sha":"0ef81ef5ea2d5cacce831a7f2db0f6207770a74c","kind":"tag","published_at":"2017-09-06T17:53:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.5","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.5/manifests"},{"name":"4.beta.4","sha":"38707bf4fe9fefec5cef907d920bc074fe8715e7","kind":"tag","published_at":"2017-08-26T02:19:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.4","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.4/manifests"},{"name":"4.beta.3","sha":"b49f1c41d0b181e3261a4c9c7d60416b582bd427","kind":"tag","published_at":"2017-07-26T15:09:36.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.3","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.3/manifests"},{"name":"4.beta.2","sha":"a21447fbad159038f21ff2af501f8c0c7eb657ac","kind":"tag","published_at":"2017-07-20T12:50:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.2/manifests"},{"name":"4.beta.1","sha":"c43f93e0d3bf1053ee0f984ea17ca8d593ace43a","kind":"tag","published_at":"2017-06-28T18:39:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.1/manifests"},{"name":"4.alpha.2","sha":"1e03bdcf2e6fad26b95a6be44366f32ef9796d5d","kind":"tag","published_at":"2016-08-17T22:13:37.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.2/manifests"},{"name":"4.alpha.1","sha":"99fca37d6e7cd87178ed0f48f0091ef03afbbe79","kind":"tag","published_at":"2016-04-29T15:28:07.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.1/manifests"},{"name":"broad-production-1","sha":"7df4044607a2cf13223b8f802cbc520cd3dd99a9","kind":"tag","published_at":"2016-04-01T17:57:50.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/broad-production-1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/broad-production-1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@broad-production-1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/broad-production-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/broad-production-1/manifests"},{"name":"4.alpha","sha":"3baf54139ae4dc2a7b408d21f7fa39b121455998","kind":"tag","published_at":"2015-12-11T23:58:35.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha/manifests"},{"name":"4.alpha.rc1","sha":"9702411391cae2e57255b84a8d174216a353d399","kind":"tag","published_at":"2015-12-08T21:26:50.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.rc1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.rc1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.rc1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.rc1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.rc1/manifests"},{"name":"4.pre-alpha","sha":"386e20adb4a84527e422c48b0d3e33419f7640fd","kind":"tag","published_at":"2015-10-09T20:43:28.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.pre-alpha","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.pre-alpha","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.pre-alpha","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.pre-alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.pre-alpha/manifests"},{"name":"first_commit","sha":"c5869ce5182348a75673aa7bf529b9af1e2ca66e","kind":"tag","published_at":"2015-10-08T19:38:37.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/first_commit","html_url":"https://github.com/broadinstitute/gatk/releases/tag/first_commit","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@first_commit","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/first_commit","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/first_commit/manifests"},{"name":"last_dataflow","sha":"114d947ab1b4d862fbf3fd02dd981d8da30ea73d","kind":"tag","published_at":"2015-10-08T18:52:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/last_dataflow","html_url":"https://github.com/broadinstitute/gatk/releases/tag/last_dataflow","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@last_dataflow","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/last_dataflow","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/last_dataflow/manifests"}]},"repo_metadata_updated_at":"2025-09-07T00:08:17.614Z","dependent_packages_count":0,"downloads":null,"downloads_period":null,"dependent_repos_count":0,"rankings":{"downloads":null,"dependent_repos_count":31.979943940947386,"dependent_packages_count":48.85985838769028,"stargazers_count":7.764600132824241,"forks_count":6.420306458829502,"average":23.75617723007285},"purl":"pkg:maven/org.broadinstitute/gatk-test-utils","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/maven/org.broadinstitute:gatk-test-utils","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/maven/org.broadinstitute:gatk-test-utils","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/maven/org.broadinstitute:gatk-test-utils/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-29T23:04:49.644Z","issues_count":257,"pull_requests_count":582,"avg_time_to_close_issue":12368218.493333334,"avg_time_to_close_pull_request":2706933.180746562,"issues_closed_count":75,"pull_requests_closed_count":509,"pull_request_authors_count":56,"issue_authors_count":189,"avg_comments_per_issue":3.431906614785992,"avg_comments_per_pull_request":1.922680412371134,"merged_pull_requests_count":407,"bot_issues_count":0,"bot_pull_requests_count":6,"past_year_issues_count":93,"past_year_pull_requests_count":207,"past_year_avg_time_to_close_issue":740224.1428571428,"past_year_avg_time_to_close_pull_request":935145.9398907104,"past_year_issues_closed_count":21,"past_year_pull_requests_closed_count":183,"past_year_pull_request_authors_count":36,"past_year_issue_authors_count":79,"past_year_avg_comments_per_issue":1.8494623655913978,"past_year_avg_comments_per_pull_request":0.8599033816425121,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":6,"past_year_merged_pull_requests_count":157,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/issues","maintainers":[{"login":"mcovarr","count":85,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"lbergelson","count":46,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"gbggrant","count":41,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"droazen","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/droazen"},{"login":"jamesemery","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"jonn-smith","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"ilyasoifer","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ilyasoifer"},{"login":"cmnbroad","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"GATKSupportTeam","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GATKSupportTeam"},{"login":"kbergin","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kbergin"},{"login":"nalinigans","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"},{"login":"KevinCLydon","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"danking","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/danking"},{"login":"asmirnov239","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/asmirnov239"},{"login":"mwalker174","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"VJalili","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"sanashah007","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sanashah007"},{"login":"mmorgantaylor","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mmorgantaylor"},{"login":"cwhelan","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cwhelan"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"}],"active_maintainers":[{"login":"mcovarr","count":70,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"gbggrant","count":33,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"lbergelson","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"cmnbroad","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"jamesemery","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"KevinCLydon","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"mwalker174","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"VJalili","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"jonn-smith","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"},{"login":"nalinigans","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk-test-utils/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk-test-utils/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk-test-utils/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk-test-utils/related_packages","maintainers":[],"registry":{"name":"repo1.maven.org","url":"https://repo.maven.apache.org/maven2","ecosystem":"maven","default":true,"packages_count":548905,"maintainers_count":0,"namespaces_count":72970,"keywords_count":34374,"github":"maven-central","metadata":{"funded_packages_count":35073},"icon_url":"https://github.com/maven-central.png","created_at":"2022-07-21T16:40:13.074Z","updated_at":"2025-09-09T06:52:33.750Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/namespaces"}},{"id":4911137,"name":"org.broadinstitute:gatk","ecosystem":"maven","description":"Development on GATK 4","homepage":"https://github.com/broadinstitute/gatk","licenses":"Apache 2.0","normalized_licenses":["Apache-2.0"],"repository_url":"https://github.com/broadinstitute/gatk","keywords_array":[],"namespace":"org.broadinstitute","versions_count":51,"first_release_published_at":"2016-04-29T16:59:10.000Z","latest_release_published_at":"2025-04-14T23:04:33.000Z","latest_release_number":"4.6.2.0","last_synced_at":"2025-09-08T03:38:52.020Z","created_at":"2022-07-27T00:35:53.221Z","updated_at":"2025-09-08T03:38:52.020Z","registry_url":"https://central.sonatype.com/artifact/org.broadinstitute/gatk/","install_command":null,"documentation_url":"https://appdoc.app/artifact/org.broadinstitute/gatk/","metadata":{},"repo_metadata":{"id":24066560,"uuid":"27452807","full_name":"broadinstitute/gatk","owner":"broadinstitute","description":"Official code repository for GATK versions 4 and up","archived":false,"fork":false,"pushed_at":"2025-09-05T16:52:42.000Z","size":485902,"stargazers_count":1847,"open_issues_count":1404,"forks_count":614,"subscribers_count":157,"default_branch":"master","last_synced_at":"2025-09-06T02:44:12.415Z","etag":null,"topics":["bioinformatics","dna","gatk","genome","genomics","ngs","science","sequencing","spark"],"latest_commit_sha":null,"homepage":"https://software.broadinstitute.org/gatk","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/broadinstitute.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.TXT","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS","dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2014-12-02T20:50:36.000Z","updated_at":"2025-09-05T02:03:47.000Z","dependencies_parsed_at":"2023-01-14T13:30:50.647Z","dependency_job_id":"c6d6c1bd-f22b-4afe-ae44-08e6fb9d6845","html_url":"https://github.com/broadinstitute/gatk","commit_stats":{"total_commits":3651,"total_committers":145,"mean_commits":"25.179310344827588","dds":0.8666118871542043,"last_synced_commit":"b409f777ddabb55bbaaf70b969cdb85d4269ac6d"},"previous_names":["broadinstitute/hellbender"],"tags_count":67,"template":false,"template_full_name":null,"purl":"pkg:github/broadinstitute/gatk","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/sbom","scorecard":{"id":113190,"data":{"date":"2025-08-11","repo":{"name":"github.com/broadinstitute/gatk","commit":"342c5ca3adc78e50ab2cc948c71a5ae64574b4ce"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":6,"checks":[{"name":"Code-Review","score":9,"reason":"Found 26/28 approved changesets -- score normalized to 9","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Maintained","score":10,"reason":"13 commit(s) and 2 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/carrot_run_test_from_pr_comment.yml:1","Warn: topLevel 'contents' permission set to 'write': .github/workflows/dependency_submission.yml:8","Warn: no topLevel permission defined: .github/workflows/gatk-nightly-docker.yml:1","Warn: no topLevel permission defined: .github/workflows/gatk-tests.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"License","score":9,"reason":"license file detected","details":["Info: project has a license file: LICENSE.TXT:0","Warn: project license file does not contain an FSF or OSI license."],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":9,"reason":"binaries present in source code","details":["Warn: binary detected: gradle/wrapper/gradle-wrapper.jar:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact 4.6.2.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 not signed: https://api.github.com/repos/broadinstitute/gatk/releases/95892670","Warn: release artifact 4.6.2.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/212072216","Warn: release artifact 4.6.1.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/181544992","Warn: release artifact 4.6.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/163161691","Warn: release artifact 4.5.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/133825179","Warn: release artifact 4.4.0.0 does not have provenance: https://api.github.com/repos/broadinstitute/gatk/releases/95892670"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Packaging","score":10,"reason":"packaging workflow detected","details":["Info: Project packages its releases by way of GitHub Actions.: .github/workflows/gatk-nightly-docker.yml:8"],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Pinned-Dependencies","score":1,"reason":"dependency not pinned by hash detected -- score normalized to 1","details":["Warn: third-party GitHubAction not pinned by hash: .github/workflows/carrot_run_test_from_pr_comment.yml:10: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/carrot_run_test_from_pr_comment.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/dependency_submission.yml:22: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/dependency_submission.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-nightly-docker.yml:13: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-nightly-docker.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:298: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:305: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:49: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:56: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:59: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:67: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:89: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:94: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:107: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:119: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:163: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:170: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:178: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:191: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:207: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:251: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:256: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:272: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/gatk-tests.yml:277: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/gatk/gatk-tests.yml/master?enable=pin","Warn: containerImage not pinned by hash: Dockerfile:4","Warn: containerImage not pinned by hash: Dockerfile:32","Warn: containerImage not pinned by hash: Dockerfile:88","Warn: containerImage not pinned by hash: scripts/docker/gatkbase/Dockerfile:4: pin your Docker image by updating ubuntu:22.04 to ubuntu:22.04@sha256:1aa979d85661c488ce030ac292876cf6ed04535d3a237e49f61542d8e5de5ae0","Warn: containerImage not pinned by hash: scripts/mitochondria_m2_wdl/Haplochecker/Dockerfile:1","Info:   0 out of  16 GitHub-owned GitHubAction dependencies pinned","Info:   3 out of  12 third-party GitHubAction dependencies pinned","Info:   0 out of   5 containerImage dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 28 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-15T16:34:36.929Z","repository_id":24066560,"created_at":"2025-08-15T16:34:36.929Z","updated_at":"2025-08-15T16:34:36.929Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273978886,"owners_count":25201417,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-06T02:00:13.247Z","response_time":2576,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"broadinstitute","name":"Broad Institute","uuid":"393552","kind":"organization","description":"Broad Institute of MIT and Harvard","email":null,"website":"http://www.broadinstitute.org/","location":"Cambridge, MA","twitter":"broadinstitute","company":null,"icon_url":"https://avatars.githubusercontent.com/u/393552?v=4","repositories_count":1083,"last_synced_at":"2023-04-09T09:48:11.262Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/broadinstitute","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-02T16:23:28.278Z","updated_at":"2023-04-09T09:48:11.836Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/broadinstitute/repositories"},"tags":[{"name":"AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","sha":"c6ebf216ae06c5dda2868013d65d4462717c33f9","kind":"commit","published_at":"2025-06-24T18:10:52.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","html_url":"https://github.com/broadinstitute/gatk/releases/tag/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/AoU_Foxtrot_2025_06_24_00_GvsBulkIngestGenomes/manifests"},{"name":"FoxTrot_Tag20250520_1","sha":"7a6bb1e4a407285e763414f357000d96de98ea4b","kind":"tag","published_at":"2025-05-20T18:10:26.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/FoxTrot_Tag20250520_1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/FoxTrot_Tag20250520_1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@FoxTrot_Tag20250520_1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/FoxTrot_Tag20250520_1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/FoxTrot_Tag20250520_1/manifests"},{"name":"4.6.2.0","sha":"76edc75c26504da94bbaee66584e107e76ee15de","kind":"tag","published_at":"2025-04-13T17:10:03.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.2.0/manifests"},{"name":"4.6.1.0","sha":"02c87bfd0beda327aef45dbc6e2b122aca2fd439","kind":"tag","published_at":"2024-10-24T15:47:47.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.1.0/manifests"},{"name":"4.6.0.0","sha":"64348bc9750ebf6cc473ecb8c1ced3fc66f05488","kind":"tag","published_at":"2024-06-29T23:12:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.6.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.6.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.6.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.6.0.0/manifests"},{"name":"4.5.0.0","sha":"8317d8bdd86fc7e83d4a094be2197bd012afe838","kind":"tag","published_at":"2023-12-13T22:42:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.5.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.5.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.5.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.5.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.5.0.0/manifests"},{"name":"after_master_merge","sha":"41f19e8d18bab6c5663aecab310df4a3d59e1b46","kind":"commit","published_at":"2023-08-31T18:40:05.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/after_master_merge","html_url":"https://github.com/broadinstitute/gatk/releases/tag/after_master_merge","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@after_master_merge","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/after_master_merge","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/after_master_merge/manifests"},{"name":"before_master_merge","sha":"34ed02ea59bfff01c9b2c082f61a064589de971f","kind":"commit","published_at":"2023-08-31T12:51:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/before_master_merge","html_url":"https://github.com/broadinstitute/gatk/releases/tag/before_master_merge","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@before_master_merge","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/before_master_merge","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/before_master_merge/manifests"},{"name":"4.1.8.1.log4jfix","sha":"1f398d97faafa41d013d490c19ecb8e544775079","kind":"tag","published_at":"2023-05-05T18:36:11.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.1.log4jfix","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.1.log4jfix","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.1.log4jfix","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1.log4jfix","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1.log4jfix/manifests"},{"name":"4.4.0.0","sha":"2dbc025821bc5f686c423ff332a41e6cef892a77","kind":"tag","published_at":"2023-03-16T18:55:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.4.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.4.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.4.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.4.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.4.0.0/manifests"},{"name":"NVSCOREVARIANTS-PREVIEW","sha":"55d88f8053526df186d5eab552b674b438a23dbe","kind":"tag","published_at":"2022-10-21T19:09:31.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/NVSCOREVARIANTS-PREVIEW","html_url":"https://github.com/broadinstitute/gatk/releases/tag/NVSCOREVARIANTS-PREVIEW","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@NVSCOREVARIANTS-PREVIEW","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/NVSCOREVARIANTS-PREVIEW","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/NVSCOREVARIANTS-PREVIEW/manifests"},{"name":"4.3.0.0","sha":"8dbb78fe789a929a5d18645cc87bad621001797e","kind":"tag","published_at":"2022-10-13T01:04:06.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.3.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.3.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.3.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.3.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.3.0.0/manifests"},{"name":"4.2.6.1","sha":"33bda5e08b6a09b40a729ee525d2e3083e0ecdf8","kind":"tag","published_at":"2022-04-13T19:10:59.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.6.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.6.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.6.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.1/manifests"},{"name":"4.2.6.0","sha":"3b0bc0394911e1581eb5d4a6b3d9c89064220bd8","kind":"tag","published_at":"2022-04-08T19:15:10.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.6.0/manifests"},{"name":"4.2.5.0","sha":"da7cd8337e0a2b5b557f2dde9c86d163f727045d","kind":"tag","published_at":"2022-02-04T22:14:05.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.5.0/manifests"},{"name":"4.2.4.1","sha":"5b8736715724d6ba7994613acbc37e1bf187f538","kind":"tag","published_at":"2022-01-04T15:58:22.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.4.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.1/manifests"},{"name":"4.2.4.0","sha":"2d3d4aaf08c7cd51017c861b54882ff855a0b4ea","kind":"tag","published_at":"2021-12-15T17:44:28.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.4.0/manifests"},{"name":"4.2.3.0","sha":"f31f0198f78c7ae34add4b54602c48b4bc791dda","kind":"tag","published_at":"2021-11-02T21:46:48.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.3.0/manifests"},{"name":"4.2.2.0","sha":"cafc6ce29aaa4cd62e39bcfa661c04d8bf034bce","kind":"tag","published_at":"2021-08-18T23:57:47.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.2.0/manifests"},{"name":"4.2.1.0","sha":"9951f77c683b187213fb160eeb8ecd0ff2d25e16","kind":"tag","published_at":"2021-07-30T21:13:12.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.1.0/manifests"},{"name":"4.2.0.0","sha":"1f7fade2afbd706539eb983087907a0cb11ee734","kind":"tag","published_at":"2021-02-19T21:07:43.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.2.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.2.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.2.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.2.0.0/manifests"},{"name":"4.1.9.0","sha":"9d5727df8db3a475b1ba5f9bff6bc92a322f5633","kind":"tag","published_at":"2020-10-09T22:23:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.9.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.9.0/manifests"},{"name":"4.1.8.1","sha":"297f24e642b0181d9ec4150be693905a80ded68b","kind":"tag","published_at":"2020-07-20T21:04:51.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.1/manifests"},{"name":"4.1.8.0","sha":"bc0994c180312cdca7afbe45b410b2c6fc312043","kind":"tag","published_at":"2020-06-26T19:05:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.8.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.8.0/manifests"},{"name":"4.1.7.0","sha":"4ec2a4b11783cd2bcb3c8998fc11d0f4a44171c9","kind":"tag","published_at":"2020-04-23T23:06:49.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.7.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.7.0/manifests"},{"name":"4.1.6.0","sha":"bdb2e15472481906f86b7dbec8a9c8e0f151c44b","kind":"tag","published_at":"2020-03-25T16:19:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.6.0/manifests"},{"name":"4.1.5.0","sha":"7f9b8491d4b8f43729278b6981554df95c95a9c6","kind":"tag","published_at":"2020-02-28T22:55:27.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.5.0/manifests"},{"name":"4.1.4.1","sha":"c61cb50a6c592fce15a67c13aa83a7d6f667dedb","kind":"tag","published_at":"2019-11-27T17:31:39.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.4.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.4.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.4.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.1/manifests"},{"name":"4.1.4.0","sha":"0a50314ef03701b067b7203c8ca3b18495587f47","kind":"tag","published_at":"2019-10-08T19:30:38.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.4.0/manifests"},{"name":"4.1.3.0","sha":"afc0e4445f11565809152bbbdc26302f0e239235","kind":"tag","published_at":"2019-08-09T19:14:24.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.3.0/manifests"},{"name":"4.1.2.0","sha":"fb16ae15f41a81b8f60fae829400afd987dbff9a","kind":"tag","published_at":"2019-04-23T17:27:31.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.2.0/manifests"},{"name":"4.1.1.0","sha":"ea3032d4860319256f454c1bfe7ebf7d484bb197","kind":"tag","published_at":"2019-03-28T22:52:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.1.0/manifests"},{"name":"4.1.0.0","sha":"335fac0133f782b1bde295a2c56e0e2dca8e3e58","kind":"tag","published_at":"2019-01-30T03:19:48.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.1.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.1.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.1.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.1.0.0/manifests"},{"name":"4.0.12.0","sha":"02682d54148af69c322e65cc3612b80463f1ec58","kind":"tag","published_at":"2018-12-17T18:40:43.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.12.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.12.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.12.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.12.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.12.0/manifests"},{"name":"4.0.11.0","sha":"5d95d60cd9e29e2cd3ba7bbabd6f996e377b72a0","kind":"tag","published_at":"2018-10-23T15:15:54.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.11.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.11.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.11.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.11.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.11.0/manifests"},{"name":"4.0.10.1","sha":"4dd7ba87d956e590bf5320036c1176921cf2e063","kind":"tag","published_at":"2018-10-09T19:01:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.10.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.10.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.10.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.1/manifests"},{"name":"4.0.10.0","sha":"7368c627f434e42b7a2a0aaf54ab046766654196","kind":"tag","published_at":"2018-10-03T22:31:22.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.10.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.10.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.10.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.10.0/manifests"},{"name":"4.0.9.0","sha":"6e352bb0599a6502f6520279896ee5cf8a8d4431","kind":"tag","published_at":"2018-09-20T17:05:32.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.9.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.9.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.9.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.9.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.9.0/manifests"},{"name":"4.0.8.1","sha":"bc983703202e76a8ba91f2e7f3b36d6d08865388","kind":"tag","published_at":"2018-08-16T19:25:04.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.8.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.8.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.8.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.1/manifests"},{"name":"4.0.8.0","sha":"1e98c6d02cefefbaa1a15db0aea64ea7518025fa","kind":"tag","published_at":"2018-08-14T20:15:15.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.8.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.8.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.8.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.8.0/manifests"},{"name":"4.0.7.0","sha":"b6a630ad1db986d6088293d55a6f8b96544ebb79","kind":"tag","published_at":"2018-07-30T18:33:19.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.7.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.7.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.7.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.7.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.7.0/manifests"},{"name":"4.0.6.0","sha":"d6a7fcd895677424b491df8c4ee6227e34b52251","kind":"tag","published_at":"2018-07-06T21:42:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.6.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.6.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.6.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.6.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.6.0/manifests"},{"name":"4.0.5.2","sha":"ee81df13de4915e9fd7d125b822101b3e464b642","kind":"tag","published_at":"2018-06-29T20:56:10.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.2/manifests"},{"name":"4.0.5.1","sha":"24b4f7b1a15e64b1cae55e773cb19f878f629618","kind":"tag","published_at":"2018-06-11T16:57:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.1/manifests"},{"name":"4.0.5.0","sha":"f4225b89a482d4e0b5a4f6542b1a59c392587516","kind":"tag","published_at":"2018-06-07T22:26:18.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.5.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.5.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.5.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.5.0/manifests"},{"name":"4.0.4.0","sha":"7641f53458f9e7c8426ecf23cfb7d74f9f94f21b","kind":"tag","published_at":"2018-04-26T15:20:59.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.4.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.4.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.4.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.4.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.4.0/manifests"},{"name":"4.0.3.0","sha":"6979f3760d72505ff3e5f96278d7a96db60d33e2","kind":"tag","published_at":"2018-03-27T20:35:42.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.3.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.3.0/manifests"},{"name":"4.0.2.1","sha":"8a7879020124a3ea4096adbd1c03b4889d72f80d","kind":"tag","published_at":"2018-03-02T19:14:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.2.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.1/manifests"},{"name":"4.0.2.0","sha":"2bb2f50996e5e826268145d426e8edd697f9a46f","kind":"tag","published_at":"2018-02-27T02:55:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.2.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.2.0/manifests"},{"name":"4.0.1.2","sha":"dbea0da698b7ca3ff78b0129758294638e74191e","kind":"tag","published_at":"2018-02-09T18:28:13.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.2/manifests"},{"name":"4.0.1.1","sha":"390274b3d0257998c464cab43a7b4758a6c6d9f2","kind":"tag","published_at":"2018-02-01T21:21:11.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.1/manifests"},{"name":"4.0.1.0","sha":"d6e7635897e1a6a773af5684511e2358d369af94","kind":"tag","published_at":"2018-01-30T18:13:29.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.1.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.1.0/manifests"},{"name":"4.0.0.0","sha":"1418c4a9ed26995586dcc3c621d8ad764adef778","kind":"tag","published_at":"2018-01-09T18:46:46.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.0.0.0","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.0.0.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.0.0.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.0.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.0.0.0/manifests"},{"name":"4.beta.6","sha":"fd8749d0aceec08b1cd4129cfebf78a635c1ae6c","kind":"tag","published_at":"2017-10-16T20:45:38.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.6","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.6/manifests"},{"name":"4.beta.5","sha":"0ef81ef5ea2d5cacce831a7f2db0f6207770a74c","kind":"tag","published_at":"2017-09-06T17:53:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.5","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.5/manifests"},{"name":"4.beta.4","sha":"38707bf4fe9fefec5cef907d920bc074fe8715e7","kind":"tag","published_at":"2017-08-26T02:19:17.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.4","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.4/manifests"},{"name":"4.beta.3","sha":"b49f1c41d0b181e3261a4c9c7d60416b582bd427","kind":"tag","published_at":"2017-07-26T15:09:36.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.3","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.3/manifests"},{"name":"4.beta.2","sha":"a21447fbad159038f21ff2af501f8c0c7eb657ac","kind":"tag","published_at":"2017-07-20T12:50:41.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.2/manifests"},{"name":"4.beta.1","sha":"c43f93e0d3bf1053ee0f984ea17ca8d593ace43a","kind":"tag","published_at":"2017-06-28T18:39:33.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.beta.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.beta.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.beta.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.beta.1/manifests"},{"name":"4.alpha.2","sha":"1e03bdcf2e6fad26b95a6be44366f32ef9796d5d","kind":"tag","published_at":"2016-08-17T22:13:37.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.2","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.2/manifests"},{"name":"4.alpha.1","sha":"99fca37d6e7cd87178ed0f48f0091ef03afbbe79","kind":"tag","published_at":"2016-04-29T15:28:07.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.1/manifests"},{"name":"broad-production-1","sha":"7df4044607a2cf13223b8f802cbc520cd3dd99a9","kind":"tag","published_at":"2016-04-01T17:57:50.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/broad-production-1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/broad-production-1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@broad-production-1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/broad-production-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/broad-production-1/manifests"},{"name":"4.alpha","sha":"3baf54139ae4dc2a7b408d21f7fa39b121455998","kind":"tag","published_at":"2015-12-11T23:58:35.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha/manifests"},{"name":"4.alpha.rc1","sha":"9702411391cae2e57255b84a8d174216a353d399","kind":"tag","published_at":"2015-12-08T21:26:50.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.alpha.rc1","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.alpha.rc1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.alpha.rc1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.rc1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.alpha.rc1/manifests"},{"name":"4.pre-alpha","sha":"386e20adb4a84527e422c48b0d3e33419f7640fd","kind":"tag","published_at":"2015-10-09T20:43:28.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/4.pre-alpha","html_url":"https://github.com/broadinstitute/gatk/releases/tag/4.pre-alpha","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@4.pre-alpha","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.pre-alpha","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/4.pre-alpha/manifests"},{"name":"first_commit","sha":"c5869ce5182348a75673aa7bf529b9af1e2ca66e","kind":"tag","published_at":"2015-10-08T19:38:37.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/first_commit","html_url":"https://github.com/broadinstitute/gatk/releases/tag/first_commit","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@first_commit","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/first_commit","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/first_commit/manifests"},{"name":"last_dataflow","sha":"114d947ab1b4d862fbf3fd02dd981d8da30ea73d","kind":"tag","published_at":"2015-10-08T18:52:16.000Z","download_url":"https://codeload.github.com/broadinstitute/gatk/tar.gz/last_dataflow","html_url":"https://github.com/broadinstitute/gatk/releases/tag/last_dataflow","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/broadinstitute/gatk@last_dataflow","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/last_dataflow","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/tags/last_dataflow/manifests"}]},"repo_metadata_updated_at":"2025-09-07T00:08:17.678Z","dependent_packages_count":2,"downloads":null,"downloads_period":null,"dependent_repos_count":3,"rankings":{"downloads":null,"dependent_repos_count":13.781497462183022,"dependent_packages_count":23.157705052608396,"stargazers_count":9.933606435931011,"forks_count":8.176459517144997,"docker_downloads_count":null,"average":13.762317116966857},"purl":"pkg:maven/org.broadinstitute/gatk","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/maven/org.broadinstitute:gatk","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/maven/org.broadinstitute:gatk","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/maven/org.broadinstitute:gatk/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-29T23:04:49.644Z","issues_count":257,"pull_requests_count":582,"avg_time_to_close_issue":12368218.493333334,"avg_time_to_close_pull_request":2706933.180746562,"issues_closed_count":75,"pull_requests_closed_count":509,"pull_request_authors_count":56,"issue_authors_count":189,"avg_comments_per_issue":3.431906614785992,"avg_comments_per_pull_request":1.922680412371134,"merged_pull_requests_count":407,"bot_issues_count":0,"bot_pull_requests_count":6,"past_year_issues_count":93,"past_year_pull_requests_count":207,"past_year_avg_time_to_close_issue":740224.1428571428,"past_year_avg_time_to_close_pull_request":935145.9398907104,"past_year_issues_closed_count":21,"past_year_pull_requests_closed_count":183,"past_year_pull_request_authors_count":36,"past_year_issue_authors_count":79,"past_year_avg_comments_per_issue":1.8494623655913978,"past_year_avg_comments_per_pull_request":0.8599033816425121,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":6,"past_year_merged_pull_requests_count":157,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/issues","maintainers":[{"login":"mcovarr","count":85,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"lbergelson","count":46,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"gbggrant","count":41,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"droazen","count":23,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/droazen"},{"login":"jamesemery","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"jonn-smith","count":13,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"ilyasoifer","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ilyasoifer"},{"login":"cmnbroad","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"GATKSupportTeam","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GATKSupportTeam"},{"login":"kbergin","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kbergin"},{"login":"nalinigans","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"},{"login":"KevinCLydon","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"danking","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/danking"},{"login":"asmirnov239","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/asmirnov239"},{"login":"mwalker174","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"VJalili","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"sanashah007","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sanashah007"},{"login":"mmorgantaylor","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mmorgantaylor"},{"login":"cwhelan","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cwhelan"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"}],"active_maintainers":[{"login":"mcovarr","count":70,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"gbggrant","count":33,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"lbergelson","count":24,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"cmnbroad","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"jamesemery","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"KevinCLydon","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"mwalker174","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"VJalili","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"jonn-smith","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"},{"login":"nalinigans","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"}]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages/org.broadinstitute:gatk/related_packages","maintainers":[],"registry":{"name":"repo1.maven.org","url":"https://repo.maven.apache.org/maven2","ecosystem":"maven","default":true,"packages_count":548905,"maintainers_count":0,"namespaces_count":72970,"keywords_count":34374,"github":"maven-central","metadata":{"funded_packages_count":35073},"icon_url":"https://github.com/maven-central.png","created_at":"2022-07-21T16:40:13.074Z","updated_at":"2025-09-09T06:52:33.750Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/repo1.maven.org/namespaces"}}],"commits":{"id":9751,"full_name":"broadinstitute/gatk","default_branch":"master","committers":[{"name":"Louis Bergelson","email":"louisb@broadinstitute.org","login":"lbergelson","count":497},{"name":"David Benjamin","email":"davidben@broadinstitute.org","login":"davidbenjamin","count":414},{"name":"Adam Kiezun","email":"akiezun@gmail.com","login":"akiezun","count":298},{"name":"Chris Norman","email":"cnorman@broadinstitute.org","login":"cmnbroad","count":253},{"name":"droazen","email":"droazen@broadinstitute.org","login":"droazen","count":238},{"name":"jamesemery","email":"emeryj@broadinstitute.org","login":"jamesemery","count":170},{"name":"samuelklee","email":"samuelklee","login":"samuelklee","count":168},{"name":"lichtens","email":"lichtens@broadinstitute.org","login":"LeeTL1220","count":139},{"name":"Tom White","email":"tom.e.white@gmail.com","login":"tomwhite","count":119},{"name":"Jonn Smith","email":"jonn-smith","login":"jonn-smith","count":107},{"name":"ldgauthier","email":"gauthier@broadinstitute.org","login":"ldgauthier","count":97},{"name":"Steve Huang","email":"shuang@broadinstitute.org","login":"SHuang-Broad","count":90},{"name":"JP Martin","email":"jpmartin@google.com","login":"jean-philippe-martin","count":80},{"name":"sooheelee","email":"shlee@broadinstitute.org","login":null,"count":66},{"name":"tedsharpe","email":"tedsharpe","login":"tedsharpe","count":59},{"name":"Daniel Gómez-Sánchez","email":"magicDGS","login":"magicDGS","count":58},{"name":"Mark Walker","email":"markw@broadinstitute.org","login":"mwalker174","count":53},{"name":"meganshand","email":"mshand@broadinstitute.org","login":"meganshand","count":51},{"name":"Takuto Sato","email":"tsato@broadinstitute.org","login":"takutosato","count":47},{"name":"vruano","email":"valentin.ruano@gmail.com","login":"vruano","count":43},{"name":"cwhelan","email":"cwhelan@gmail.com","login":"cwhelan","count":35},{"name":"achevali","email":"aaronc@broadinstitute.org","login":"achevali","count":29},{"name":"Ron Levine","email":"rlevine@broadinstitute.org","login":"ronlevine","count":28},{"name":"Valentin Ruano Rubio","email":"valentin@broadinstitute.org","login":null,"count":27},{"name":"Andrey Smirnov","email":"asmirnov2009@gmail.com","login":"asmirnov239","count":27},{"name":"Mehrtash Babadi","email":"mehrtash@broadinstitute.org","login":"mbabadi","count":25},{"name":"Nalini Ganapati","email":"35076948+nalinigans","login":"nalinigans","count":24},{"name":"chandrans","email":"schandra@broadinstitute.org","login":"chandrans","count":21},{"name":"David Adams","email":"davidada@google.com","login":"davidadamsphd","count":21},{"name":"sooheelee","email":"sooheelee","login":"sooheelee","count":17},{"name":"Ilya Soifer","email":"ilya.soifer@ultimagen.com","login":"ilyasoifer","count":17},{"name":"bbimber","email":"bbimber@gmail.com","login":"bbimber","count":16},{"name":"Samuel Friedman","email":"lucidtronix@gmail.com","login":"lucidtronix","count":15},{"name":"kachulis","email":"39926576+kachulis","login":"kachulis","count":13},{"name":"Kevin Lydon","email":"klydon@broadinstitute.org","login":"KevinCLydon","count":11},{"name":"TedBrookings","email":"ted.brookings@googlemail.com","login":"TedBrookings","count":10},{"name":"Geraldine Van der Auwera","email":"vdauwera@broadinstitute.org","login":null,"count":10},{"name":"Edward Kwiatkowski","email":"edwardk@broadinstitute.org","login":"edwardkw","count":10},{"name":"orlicohen","email":"107129422+orlicohen","login":"orlicohen","count":9},{"name":"Ernesto Brau","email":"gooneto@gmail.com","login":"erniebrau","count":9},{"name":"Andrea Haessly","email":"ahaessly@broadinstitute.org","login":"ahaessly","count":9},{"name":"Yossi Farjoun","email":"farjoun@broadinstitute.org","login":null,"count":9},{"name":"Matt Sooknah","email":"msooknah@broadinstitute.org","login":"mattsooknah","count":9},{"name":"Karthik Gururaj","email":"gururaj.karthik@gmail.com","login":"kgururaj","count":8},{"name":"tovanadler","email":"tovanadler@google.com","login":"tovanadler","count":8},{"name":"George Powley","email":"george.s.powley@intel.com","login":null,"count":8},{"name":"Mohamed Ezzat","email":"mohamed.ezzat@devfactory.com","login":null,"count":8},{"name":"Marton Kanasz-Nagy","email":"kanasz.nagy.marton@gmail.com","login":"MartonKN","count":7},{"name":"Genevieve Brandt","email":"37340869+gbrandt6","login":"gbrandt6","count":7},{"name":"michaelgatzen","email":"52426291+michaelgatzen","login":"michaelgatzen","count":7},{"name":"Dror Kessler","email":"dror27.kessler@gmail.com","login":"dror27","count":6},{"name":"epiercehoffman","email":"epierceh@broadinstitute.org","login":"epiercehoffman","count":6},{"name":"Don Freed","email":"DonFreed","login":"DonFreed","count":6},{"name":"Nils Homer","email":"nh13","login":"nh13","count":6},{"name":"Andrey Smirnov","email":"asmirnov@broadinstitute.org","login":null,"count":6},{"name":"Gökalp Çelik","email":"37572619+gokalpcelik","login":"gokalpcelik","count":5},{"name":"Khalid Shakir","email":"kshakir@broadinstitute.org","login":"kshakir","count":5},{"name":"mlathara","email":"32438632+mlathara","login":"mlathara","count":5},{"name":"ayman abdelghany","email":"aymana.ghany@devfactory.com","login":"AymanDF","count":5},{"name":"jsotobroad","email":"jsoto@broadinstitute.com","login":"jsotobroad","count":5},{"name":"Datta, Kushal","email":"kushal.datta@intel.com","login":"kdatta","count":4},{"name":"David E. Kling","email":"dkling@broadinstitute.org","login":"dekling","count":4},{"name":"Uri Laserson","email":"laserson@cloudera.com","login":"laserson","count":4},{"name":"haileypfox","email":"63208145+haileypfox","login":"haileypfox","count":4},{"name":"Mark Fleharty","email":"fleharty","login":"fleharty","count":4},{"name":"bshifaw","email":"bshifaw@broadinstitute.com","login":null,"count":4},{"name":"skwalker","email":"skwalker@broadinstitute.org","login":"skwalker","count":4},{"name":"jamesemery","email":"emeryj@carleton.edu","login":null,"count":3},{"name":"pnvaidya","email":"priya.n.vaidya@intel.com","login":"pnvaidya","count":3},{"name":"kcibul","email":"kcibul@broadinstitute.org","login":"kcibul","count":3},{"name":"tmelman","email":"22672518+tmelman","login":"tmelman","count":3},{"name":"kvinter1","email":"42148952+kvinter1","login":"kvinter1","count":3},{"name":"Patrick Foley","email":"psfoley@gmail.com","login":"psfoley","count":3},{"name":"Kenji Kaneda","email":"kenji.kaneda@gmail.com","login":"kkaneda","count":3},{"name":"jonathoncohen98","email":"51167978+jonathoncohen98","login":"jonathoncohen98","count":3},{"name":"Josh Holland","email":"anowlcalledjosh@gmail.com","login":"sersorrel","count":3},{"name":"Deepika Yeramosu","email":"94006622+dyeramosu","login":"dyeramosu","count":3},{"name":"madduran","email":"mduran@broadinstitute.org","login":null,"count":2},{"name":"Peter Fan","email":"pjfan@broadinstitute.org","login":null,"count":2},{"name":"Jan van der Lugt","email":"janlugt@gmail.com","login":"janlugt","count":2},{"name":"nenewell","email":"nenewell@comcast.net","login":"nenewell","count":2},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":2},{"name":"apete","email":"apete@optimatika.se","login":"apete","count":2},{"name":"Ariel Schwartz","email":"als364@cornell.edu","login":"als364","count":2},{"name":"Derek Caetano-Anollés","email":"dcaetan2@gmail.com","login":"derekca","count":2},{"name":"George Grant","email":"ggrant@broadinstitute.org","login":"gbggrant","count":2},{"name":"Miguel Covarrubias","email":"mcovarr","login":"mcovarr","count":2},{"name":"Rick Wertenbroek","email":"rick.wertenbroek@heig-vd.ch","login":"rick-heig","count":2},{"name":"Ricky Magner","email":"81349869+rickymagner","login":"rickymagner","count":2},{"name":"byoo","email":"byunggil.yoo@gmail.com","login":"byoo","count":2},{"name":"kohlk","email":"kohlk@lclark.edu","login":"kohlk","count":1},{"name":"slzhao","email":"zhaoshilin@gmail.com","login":"slzhao","count":1},{"name":"Anders Leung","email":"37423859+andersleung","login":"andersleung","count":1},{"name":"James Emery","email":"emeryj@gmb5b-a6b.broadinstitute.org","login":null,"count":1},{"name":"Jake VanCampen","email":"jvancampen@stowers.org","login":null,"count":1},{"name":"Frank Liu","email":"frankliu@us.ibm.com","login":null,"count":1},{"name":"Eugene Wolfson","email":"eugene.wolfson@mlb.com","login":null,"count":1},{"name":"arsenb","email":"arsenb@broadinstitute.org","login":null,"count":1},{"name":"Mark Walker","email":"markw@127.0.0.1","login":null,"count":1},{"name":"Mohammed Ezzat","email":"mohamed.ezzat@aurea.com","login":null,"count":1},{"name":"Ash","email":"aofarrel@ucsc.edu","login":"aofarrel","count":1},{"name":"Chang Y","email":"yech1990@gmail.com","login":"y9c","count":1},{"name":"Chris Macdonald","email":"17653365+odcambc","login":"odcambc","count":1},{"name":"Daniel Moran","email":"danxmoran@gmail.com","login":"danxmoran","count":1},{"name":"David Bernick","email":"dbernick@broadinstitute.org","login":"davidbernick","count":1},{"name":"Drahull","email":"AxVE","login":"AxVE","count":1},{"name":"Eugene Wolfson","email":"evulfson@gmail.com","login":"yegeniy","count":1},{"name":"Francisco M. Casares","email":"francares@gmail.com","login":"francares","count":1},{"name":"Frank Austin Nothaft","email":"fnothaft@alumni.stanford.edu","login":"fnothaft","count":1},{"name":"Frank Liu","email":"frank-y-liu","login":"frank-y-liu","count":1},{"name":"Giles Hall","email":"ghall+github@broadinstitute.org","login":"gileshall","count":1},{"name":"Joel Thibault","email":"thibault@broadinstitute.org","login":"jmthibault79","count":1},{"name":"yonahgreene","email":"53441139+yonahgreene","login":"yonahgreene","count":1},{"name":"Bhanu Gandham","email":"bhanugandham.bg@gmail.com","login":"bhanugandham","count":1},{"name":"David Adams","email":"david.adams.phd@gmail.com","login":"davidaadams","count":1},{"name":"Sana Shah","email":"54493565+sanashah007","login":"sanashah007","count":1},{"name":"RoriCremer","email":"6863459+RoriCremer","login":"RoriCremer","count":1},{"name":"Michael R. Crusoe","email":"1330696+mr-c","login":"mr-c","count":1},{"name":"Kevin Palis","email":"palis@broadinstitute.org","login":"kevinpalis","count":1},{"name":"Joshua Wilding","email":"joshua.wilding@aggiemail.usu.edu","login":"joshwilding4444","count":1},{"name":"John Marshall","email":"jmarshall@hey.com","login":"jmarshall","count":1},{"name":"Stanley Lan","email":"sclantw@hotmail.com","login":"sclan","count":1},{"name":"Tim Fennell","email":"tfenne@tfenne.com","login":"tfenne","count":1},{"name":"Trevyn Langsford","email":"tlangs@broadinstitute.org","login":"tlangs","count":1},{"name":"benjamincarlin","email":"42980312+benjamincarlin","login":"benjamincarlin","count":1},{"name":"dantefff","email":"dantefff","login":"dantefff","count":1},{"name":"EdwardDixon","email":"dixon.edward@gmail.com","login":"EdwardDixon","count":1}],"total_commits":0,"total_committers":127,"total_bot_commits":2,"total_bot_committers":1,"mean_commits":28.95275590551181,"dds":0.8648354636932282,"past_year_committers":[{"name":"Louis Bergelson","email":"louisb@broadinstitute.org","login":"lbergelson","count":16},{"name":"meganshand","email":"mshand@broadinstitute.org","login":"meganshand","count":9},{"name":"droazen","email":"droazen@broadinstitute.org","login":"droazen","count":8},{"name":"David Benjamin","email":"davidben@broadinstitute.org","login":"davidbenjamin","count":7},{"name":"Gökalp Çelik","email":"37572619+gokalpcelik","login":"gokalpcelik","count":5},{"name":"jamesemery","email":"emeryj@broadinstitute.org","login":"jamesemery","count":5},{"name":"Ilya Soifer","email":"ilya.soifer@ultimagen.com","login":"ilyasoifer","count":4},{"name":"Laura Gauthier","email":"gauthier@broadinstitute.org","login":"ldgauthier","count":4},{"name":"Mark Walker","email":"markw@broadinstitute.org","login":"mwalker174","count":4},{"name":"Chris Norman","email":"cnorman@broadinstitute.org","login":"cmnbroad","count":3},{"name":"Nalini Ganapati","email":"35076948+nalinigans","login":"nalinigans","count":3},{"name":"Kevin Lydon","email":"klydon@broadinstitute.org","login":"KevinCLydon","count":2},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":2},{"name":"samuelklee","email":"samuelklee","login":"samuelklee","count":2},{"name":"Dror Kessler","email":"dror27.kessler@gmail.com","login":"dror27","count":1},{"name":"Jonn Smith","email":"jonn-smith","login":"jonn-smith","count":1},{"name":"Kevin Palis","email":"palis@broadinstitute.org","login":"kevinpalis","count":1},{"name":"Ricky Magner","email":"81349869+rickymagner","login":"rickymagner","count":1},{"name":"Sana Shah","email":"54493565+sanashah007","login":"sanashah007","count":1},{"name":"Takuto Sato","email":"tsato@broadinstitute.org","login":"takutosato","count":1},{"name":"bbimber","email":"bbimber@gmail.com","login":"bbimber","count":1},{"name":"epiercehoffman","email":"epierceh@broadinstitute.org","login":"epiercehoffman","count":1}],"past_year_total_commits":82,"past_year_total_committers":22,"past_year_total_bot_commits":2,"past_year_total_bot_committers":1,"past_year_mean_commits":3.727272727272727,"past_year_dds":0.8048780487804879,"last_synced_at":"2025-09-09T16:08:59.395Z","last_synced_commit":null,"created_at":"2023-03-07T09:52:47.067Z","updated_at":"2025-09-09T16:08:58.868Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5532314,"commits_count":870800544,"contributors_count":32076502,"owners_count":918195,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"broadinstitute/gatk","html_url":"https://github.com/broadinstitute/gatk","last_synced_at":"2025-09-09T04:14:28.677Z","status":"active","issues_count":277,"pull_requests_count":950,"avg_time_to_close_issue":13365303.913580246,"avg_time_to_close_pull_request":2463372.720959596,"issues_closed_count":81,"pull_requests_closed_count":792,"pull_request_authors_count":58,"issue_authors_count":207,"avg_comments_per_issue":2.711191335740072,"avg_comments_per_pull_request":1.3894736842105262,"merged_pull_requests_count":647,"bot_issues_count":0,"bot_pull_requests_count":12,"past_year_issues_count":80,"past_year_pull_requests_count":318,"past_year_avg_time_to_close_issue":840605.2666666667,"past_year_avg_time_to_close_pull_request":773523.686746988,"past_year_issues_closed_count":15,"past_year_pull_requests_closed_count":249,"past_year_pull_request_authors_count":33,"past_year_issue_authors_count":73,"past_year_avg_comments_per_issue":0.575,"past_year_avg_comments_per_pull_request":0.6729559748427673,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":12,"past_year_merged_pull_requests_count":215,"created_at":"2023-05-16T03:42:11.487Z","updated_at":"2025-09-09T04:14:28.678Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/broadinstitute%2Fgatk/issues","issue_labels_count":{"bug":13,"Funcotator":11,"GenomicsDB":6,"community-request":5,"Mutect":5,"PRIORITY_HIGH":4,"Spark":4,"HaplotypeCaller":4,"Germline CNV":4,"learn GATK":3,"Documentation":3,"Docker":2,"BuildSystem":2,"BQSR":2,"tests":2,"WaitingForUser":2,"JointCalling":2,"performance":2,"question":2,"enhancement":1,"HTSJDK":1,"Engine":1,"CNN":1,"GenotypeGVCFs":1,"DRAGEN-GATK":1,"Copy Number tools":1,"cram":1,"tools":1,"Python":1,"assembly":1,"azure":1,"HaplotypeCallerSpark":1,"FlowBasedGATK":1,"wdl":1,"Barclay":1,"PRIORITY_LOW":1},"pull_request_labels_count":{"dependencies":12,"java":12,"Funcotator":1,"DRAGEN-GATK":1,"CNN":1,"enhancement":1,"HaplotypeCaller":1,"⛔ DO NOT MERGE ⛔":1},"issue_author_associations_count":{"NONE":210,"COLLABORATOR":32,"CONTRIBUTOR":30,"MEMBER":5},"pull_request_author_associations_count":{"COLLABORATOR":373,"CONTRIBUTOR":353,"NONE":138,"MEMBER":86},"issue_authors":{"droazen":9,"GATKSupportTeam":8,"jamesemery":7,"gokalpcelik":6,"bbimber":4,"yurivict":4,"lbergelson":4,"jonn-smith":4,"meganshand":3,"DarioS":3,"Stikus":3,"vappiah":3,"gevro":3,"lovelycatZ":3,"mrymkdnz":3,"sujianed":2,"lukaskon":2,"stefandiederich":2,"ilyasoifer":2,"LeeTL1220":2,"nityajain2002":2,"gudeqing":2,"robby81":2,"BenjaminDEMAILLE":2,"magicDGS":2,"nathanLauHKGI":2,"ChenDepp":2,"elcortegano":2,"J-Moravec":2,"snakesch":2,"DanielAmsel":2,"rajwanir":2,"zhanyinx":2,"brianjohnhaas":1,"MikeWLloyd":1,"dongyiyi":1,"fgvieira":1,"bwubb":1,"TomofumiSaka":1,"aushev":1,"MattMcL4475":1,"kaixinxiaonvwa-hub":1,"zoldrax":1,"jomoxi":1,"wang7760":1,"dkioroglou":1,"Srinivas9362":1,"cjchen5":1,"X7xf":1,"khanshahan":1,"gbggrant":1,"JWollnik":1,"cademirch":1,"martitroiani":1,"Joyjoyjoyc":1,"hkirmak":1,"EsperanzaDai":1,"RoriCremer":1,"GooLey1025":1,"skchronicles":1,"jielab":1,"panpanchen123":1,"Mirror1211":1,"zznx":1,"xdgene":1,"Fatimazahra456":1,"ykcchong":1,"jan-glx":1,"lczech":1,"ChrisSteel-bio":1,"sooheelee":1,"BenjaminWehnert1008":1,"joshwilding4444":1,"MikkelSchubert":1,"owensgl":1,"jiangluguang123":1,"cwhelan":1,"ytao0210":1,"yixuanw99":1,"imDpeng":1,"lculibrk":1,"stuartwillis":1,"ldgauthier":1,"DiabloRex":1,"johannesgeibel":1,"dansteiert":1,"Urja25":1,"zhaohongqiangsoliva":1,"polymerase2010":1,"Addy81":1,"tmm211":1,"mmahmoudian":1,"potter-s":1,"keenhl":1,"IgorUlitsky":1,"l-magnificence":1,"shulik7":1,"konopinski":1,"davidbenjamin":1,"tobsecret":1,"yfarjoun":1,"vinit-aai":1,"lh12565":1,"SallemiAmeni":1,"jphruska":1,"xiekunwhy":1,"abdohlman":1,"singha30":1,"nalinigans":1,"rollf":1,"seunghun23":1,"shuaiwang2":1,"csmiguel":1,"NotAPoetButACriminal":1,"MetteBoge":1,"JavisPeng":1,"kotchanipar":1,"yuweibao15":1,"YuanTian1991":1,"jingxiant":1,"Avinash-git-py":1,"moe1619":1,"bw2":1,"drtconway":1,"FLsandell":1,"nh13":1,"carbocation":1,"Dkyuan":1,"heliac2000":1,"ld9866":1,"gaochenx":1,"Sherry520":1,"jupollet":1,"Ben-Akande":1,"kgori":1,"fi1d18":1,"SHuang-Broad":1,"shenzhongjun":1,"lubocoix":1,"brisk022":1,"jenny8030":1,"poconnel3":1,"pjgreer":1,"erah1":1,"hukai916":1,"famosab":1,"mohitmathew":1,"Ithinky":1,"RezwanCAAS":1,"hxtjc":1,"Nanderson246":1,"eholdmore":1,"Alipha-Clisa":1,"sonejilab":1,"februaryfang":1,"ddrichel":1,"sorelfitzgibbon":1,"emsisson":1,"genmaibutter":1,"LN908":1,"nrao-nmdp":1,"asgerjakobsen":1,"SiddhiJani":1,"PeterResutik":1,"emwjacobson":1,"Nehir291":1,"juliawiggeshoff":1,"cmnbroad":1,"Sgornard":1,"y9c":1,"derekca":1,"MarionFresquet":1,"pogodina-nadezda":1,"rickymagner":1,"AthenACHY":1,"StefanoPallotti":1,"asaki1986":1,"joshua-biocoder":1,"AxVE":1,"VasLem":1,"jin0008":1,"Tonitsk8264":1,"ShirelyI":1,"nvnieuwk":1,"tfenne":1,"Bowen1992":1,"YanisChrys":1,"Xuehai-Chen":1,"georgiiprovisor":1,"Honeyglitch":1,"shenkers":1,"starsareintherose":1,"LYOKOIIIYYR":1,"ertanyilmaz38":1,"fjptwenger":1,"Wasya-the-Wolf":1,"Solenyalyl":1,"ValerieCrolley":1,"vidprijatelj":1,"aarthi-mohan":1,"sahuno":1,"kvn95ss":1,"splaisan":1,"SpikyClip":1,"nickhsmith":1,"fo40225":1,"Han-Cao":1},"pull_request_authors":{"mcovarr":240,"gbggrant":157,"lbergelson":74,"rsasch":72,"RoriCremer":61,"droazen":31,"koncheto-broad":25,"davidbenjamin":22,"jamesemery":19,"meganshand":19,"mwalker174":18,"ilyasoifer":17,"cmnbroad":16,"ldgauthier":15,"dependabot[bot]":12,"dror27":11,"jonn-smith":11,"kbergin":11,"KevinCLydon":9,"nalinigans":8,"gokalpcelik":7,"yonghaoy":6,"epiercehoffman":6,"samuelklee":6,"danking":6,"bbimber":6,"takutosato":4,"kcibul":4,"rickymagner":4,"kockan":4,"chrisvittal":4,"Qi77Qi":4,"VJalili":3,"MattMcL4475":3,"chirayuharyan":3,"kevinpalis":2,"odcambc":2,"TomofumiSaka":2,"asmirnov239":2,"vilay-nference":2,"DanishIntizar":2,"jmthibault79":2,"jmarshall":2,"sanashah007":2,"yanwuanxin":1,"kshakir":1,"pontushojer":1,"mmorgantaylor":1,"kjaisingh":1,"haileypfox":1,"konradjk":1,"kachulis":1,"ungwudik":1,"jan-glx":1,"calbach":1,"dyeramosu":1,"lindenb":1,"kirschem-roche":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10196250,"issues_count":32245739,"pull_requests_count":101768105,"authors_count":10740850,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"question":1,"Mutect":1},"past_year_pull_request_labels_count":{"dependencies":12,"java":12,"⛔ DO NOT MERGE ⛔":1},"past_year_issue_author_associations_count":{"NONE":69,"CONTRIBUTOR":5,"COLLABORATOR":3,"MEMBER":1},"past_year_pull_request_author_associations_count":{"COLLABORATOR":166,"CONTRIBUTOR":63,"MEMBER":49,"NONE":38},"past_year_issue_authors":{"gokalpcelik":3,"rajwanir":2,"BenjaminDEMAILLE":2,"vappiah":2,"nityajain2002":2,"polymerase2010":1,"pogodina-nadezda":1,"poconnel3":1,"pjgreer":1,"PeterResutik":1,"NotAPoetButACriminal":1,"Nanderson246":1,"moe1619":1,"mmahmoudian":1,"MarionFresquet":1,"lovelycatZ":1,"lczech":1,"lbergelson":1,"khanshahan":1,"kgori":1,"zznx":1,"zhanyinx":1,"YuanTian1991":1,"yfarjoun":1,"xiekunwhy":1,"xdgene":1,"X7xf":1,"VasLem":1,"Urja25":1,"tobsecret":1,"stuartwillis":1,"stefandiederich":1,"splaisan":1,"SpikyClip":1,"skchronicles":1,"SiddhiJani":1,"Sgornard":1,"keenhl":1,"famosab":1,"emwjacobson":1,"emsisson":1,"drtconway":1,"droazen":1,"dkioroglou":1,"DiabloRex":1,"DarioS":1,"dansteiert":1,"csmiguel":1,"ChenDepp":1,"bwubb":1,"brisk022":1,"BenjaminWehnert1008":1,"bbimber":1,"Alipha-Clisa":1,"aarthi-mohan":1,"JWollnik":1,"jphruska":1,"Joyjoyjoyc":1,"jonn-smith":1,"jomoxi":1,"johannesgeibel":1,"jingxiant":1,"jiangluguang123":1,"jenny8030":1,"jamesemery":1,"IgorUlitsky":1,"hukai916":1,"Honeyglitch":1,"hkirmak":1,"GooLey1025":1,"gevro":1,"FLsandell":1},"past_year_pull_request_authors":{"mcovarr":96,"gbggrant":51,"lbergelson":45,"koncheto-broad":12,"dependabot[bot]":12,"RoriCremer":11,"mwalker174":8,"yonghaoy":6,"jamesemery":6,"rsasch":6,"cmnbroad":6,"droazen":6,"gokalpcelik":5,"davidbenjamin":5,"takutosato":4,"Qi77Qi":4,"kockan":4,"KevinCLydon":3,"VJalili":3,"chirayuharyan":3,"epiercehoffman":2,"bbimber":2,"ldgauthier":2,"meganshand":2,"samuelklee":2,"nalinigans":2,"jmthibault79":2,"kirschem-roche":1,"jonn-smith":1,"dror27":1,"ungwudik":1,"kjaisingh":1,"pontushojer":1},"maintainers":[{"login":"mcovarr","count":152,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"gbggrant","count":106,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"lbergelson","count":75,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"droazen","count":33,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/droazen"},{"login":"jamesemery","count":26,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"ilyasoifer","count":19,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ilyasoifer"},{"login":"cmnbroad","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"jonn-smith","count":15,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"kbergin","count":11,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/kbergin"},{"login":"KevinCLydon","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"nalinigans","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"},{"login":"GATKSupportTeam","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/GATKSupportTeam"},{"login":"danking","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/danking"},{"login":"VJalili","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"sanashah007","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sanashah007"},{"login":"asmirnov239","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/asmirnov239"},{"login":"cwhelan","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cwhelan"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"},{"login":"mwalker174","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"mmorgantaylor","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mmorgantaylor"}],"active_maintainers":[{"login":"mcovarr","count":96,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mcovarr"},{"login":"gbggrant","count":51,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gbggrant"},{"login":"lbergelson","count":44,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lbergelson"},{"login":"jamesemery","count":7,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jamesemery"},{"login":"cmnbroad","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cmnbroad"},{"login":"droazen","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/droazen"},{"login":"KevinCLydon","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/KevinCLydon"},{"login":"VJalili","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/VJalili"},{"login":"jonn-smith","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jonn-smith"},{"login":"mwalker174","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/mwalker174"},{"login":"nalinigans","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nalinigans"},{"login":"koncheto-broad","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/koncheto-broad"}]},"events":{"total":{"ForkEvent":32,"CreateEvent":199,"ReleaseEvent":2,"IssuesEvent":75,"WatchEvent":148,"DeleteEvent":161,"MemberEvent":2,"IssueCommentEvent":252,"PushEvent":1192,"GollumEvent":2,"PullRequestReviewEvent":565,"PullRequestReviewCommentEvent":517,"PullRequestEvent":269},"last_year":{"ForkEvent":32,"CreateEvent":199,"ReleaseEvent":2,"IssuesEvent":75,"WatchEvent":148,"DeleteEvent":161,"MemberEvent":2,"IssueCommentEvent":253,"PushEvent":1199,"GollumEvent":2,"PullRequestReviewEvent":565,"PullRequestReviewCommentEvent":517,"PullRequestEvent":269}},"keywords":["bioinformatics","dna","gatk","genome","genomics","ngs","science","sequencing","spark"],"dependencies":[{"ecosystem":"maven","filepath":"build.gradle","sha":null,"kind":"manifest","created_at":"2022-08-07T11:00:53.835Z","updated_at":"2022-08-07T11:00:53.835Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/build.gradle","dependencies":[{"id":594830376,"package_name":"org.aeonbits.owner:owner","ecosystem":"maven","requirements":"1.0.9","direct":true,"kind":"implementation","optional":false},{"id":594830377,"package_name":"com.opencsv:opencsv","ecosystem":"maven","requirements":"3.4","direct":true,"kind":"implementation","optional":false},{"id":594830378,"package_name":"com.google.cloud:google-cloud-bigquerystorage","ecosystem":"maven","requirements":"2.9.1","direct":true,"kind":"implementation","optional":false},{"id":594830379,"package_name":"gov.nist.math.jama:gov.nist.math.jama","ecosystem":"maven","requirements":"1.1.1","direct":true,"kind":"implementation","optional":false},{"id":594830380,"package_name":"com.google.cloud.bigdataoss:gcs-connector","ecosystem":"maven","requirements":"1.9.4-hadoop3","direct":true,"kind":"implementation","optional":false},{"id":594830381,"package_name":"org.apache.commons:commons-lang3","ecosystem":"maven","requirements":"3.5","direct":true,"kind":"implementation","optional":false},{"id":594830382,"package_name":"org.apache.commons:commons-math3","ecosystem":"maven","requirements":"3.5","direct":true,"kind":"implementation","optional":false},{"id":594830383,"package_name":"org.apache.commons:commons-collections4","ecosystem":"maven","requirements":"4.1","direct":true,"kind":"implementation","optional":false},{"id":594830384,"package_name":"org.apache.commons:commons-vfs2","ecosystem":"maven","requirements":"2.0","direct":true,"kind":"implementation","optional":false},{"id":594830385,"package_name":"org.apache.commons:commons-configuration2","ecosystem":"maven","requirements":"2.4","direct":true,"kind":"implementation","optional":false},{"id":594830386,"package_name":"org.apache.httpcomponents:httpclient","ecosystem":"maven","requirements":"4.5.12","direct":true,"kind":"implementation","optional":false},{"id":594830387,"package_name":"commons-beanutils:commons-beanutils","ecosystem":"maven","requirements":"1.9.3","direct":true,"kind":"implementation","optional":false},{"id":594830388,"package_name":"commons-io:commons-io","ecosystem":"maven","requirements":"2.5","direct":true,"kind":"implementation","optional":false},{"id":594830389,"package_name":"org.reflections:reflections","ecosystem":"maven","requirements":"0.9.10","direct":true,"kind":"implementation","optional":false},{"id":594830390,"package_name":"it.unimi.dsi:fastutil","ecosystem":"maven","requirements":"7.0.6","direct":true,"kind":"implementation","optional":false},{"id":594830391,"package_name":"org.broadinstitute:hdf5-java-bindings","ecosystem":"maven","requirements":"1.1.0-hdf5_2.11.0","direct":true,"kind":"implementation","optional":false},{"id":594830392,"package_name":"org.broadinstitute:gatk-native-bindings","ecosystem":"maven","requirements":"1.0.0","direct":true,"kind":"implementation","optional":false},{"id":594830393,"package_name":"org.ojalgo:ojalgo","ecosystem":"maven","requirements":"44.0.0","direct":true,"kind":"implementation","optional":false},{"id":594830394,"package_name":"org.ojalgo:ojalgo-commons-math3","ecosystem":"maven","requirements":"1.0.0","direct":true,"kind":"implementation","optional":false},{"id":594830395,"package_name":"org.apache.spark:spark-mllib_","ecosystem":"maven","requirements":"*","direct":true,"kind":"implementation","optional":false},{"id":594830396,"package_name":"com.thoughtworks.paranamer:paranamer","ecosystem":"maven","requirements":"2.8","direct":true,"kind":"implementation","optional":false},{"id":594830397,"package_name":"org.bdgenomics.bdg-formats:bdg-formats","ecosystem":"maven","requirements":"0.5.0","direct":true,"kind":"implementation","optional":false},{"id":594830398,"package_name":"org.bdgenomics.adam:adam-core-spark2_","ecosystem":"maven","requirements":"*","direct":true,"kind":"implementation","optional":false},{"id":594830399,"package_name":"org.jgrapht:jgrapht-core","ecosystem":"maven","requirements":"1.1.0","direct":true,"kind":"implementation","optional":false},{"id":594830400,"package_name":"org.jgrapht:jgrapht-io","ecosystem":"maven","requirements":"1.1.0","direct":true,"kind":"implementation","optional":false},{"id":594830401,"package_name":"com.github.jsr203hadoop:jsr203hadoop","ecosystem":"maven","requirements":"1.0.3","direct":true,"kind":"implementation","optional":false},{"id":594830402,"package_name":"de.javakaffee:kryo-serializers","ecosystem":"maven","requirements":"0.41","direct":true,"kind":"implementation","optional":false},{"id":594830403,"package_name":"org.objenesis:objenesis","ecosystem":"maven","requirements":"1.2","direct":true,"kind":"implementation","optional":false},{"id":594830404,"package_name":"org.objenesis:objenesis","ecosystem":"maven","requirements":"2.1","direct":true,"kind":"testImplementation","optional":false},{"id":594830405,"package_name":"com.esotericsoftware:kryo","ecosystem":"maven","requirements":"3.0.3","direct":true,"kind":"implementation","optional":false},{"id":594830406,"package_name":"com.intel.gkl:gkl","ecosystem":"maven","requirements":"0.8.8","direct":true,"kind":"implementation","optional":false},{"id":594830407,"package_name":"org.broadinstitute:gatk-bwamem-jni","ecosystem":"maven","requirements":"1.0.4","direct":true,"kind":"implementation","optional":false},{"id":594830408,"package_name":"org.broadinstitute:gatk-fermilite-jni","ecosystem":"maven","requirements":"1.2.0","direct":true,"kind":"implementation","optional":false},{"id":594830409,"package_name":"org.broadinstitute:http-nio","ecosystem":"maven","requirements":"0.1.0-rc1","direct":true,"kind":"implementation","optional":false},{"id":594830410,"package_name":"org.xerial:sqlite-jdbc","ecosystem":"maven","requirements":"3.36.0.3","direct":true,"kind":"implementation","optional":false},{"id":594830411,"package_name":"net.grey-panther:natural-comparator","ecosystem":"maven","requirements":"1.1","direct":true,"kind":"implementation","optional":false},{"id":594830412,"package_name":"com.fasterxml.jackson.module:jackson-module-scala_","ecosystem":"maven","requirements":"*","direct":true,"kind":"implementation","optional":false},{"id":594830413,"package_name":"org.mockito:mockito-core","ecosystem":"maven","requirements":"2.28.2","direct":true,"kind":"testImplementation","optional":false},{"id":594830414,"package_name":"com.google.jimfs:jimfs","ecosystem":"maven","requirements":"1.1","direct":true,"kind":"testImplementation","optional":false}]},{"ecosystem":"actions","filepath":".github/actions/upload-gatk-test-results/action.yml","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:17.283Z","updated_at":"2023-01-14T08:45:17.283Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/.github/actions/upload-gatk-test-results/action.yml","dependencies":[{"id":6893632013,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/carrot_run_test_from_pr_comment.yml","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:17.676Z","updated_at":"2023-01-14T08:45:17.676Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/.github/workflows/carrot_run_test_from_pr_comment.yml","dependencies":[{"id":6893632041,"package_name":"broadinstitute/carrot-publish-github-action","ecosystem":"actions","requirements":"0.6.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/gatk-nightly-docker.yml","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:17.887Z","updated_at":"2023-01-14T08:45:17.887Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/.github/workflows/gatk-nightly-docker.yml","dependencies":[{"id":6893632553,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6893632555,"package_name":"docker/login-action","ecosystem":"actions","requirements":"f054a8b539a109f9f41c372932f1ae047eff08c9","direct":true,"kind":"composite","optional":false},{"id":6893632556,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"98669ae865ea3cffbcbaa878cf57c20bbf1c6c38","direct":true,"kind":"composite","optional":false},{"id":6893632557,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"ad44023a93711e3deb337508980b4b5e9bcdc5dc","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/gatk-tests.yml","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:18.236Z","updated_at":"2023-01-14T08:45:18.236Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/.github/workflows/gatk-tests.yml","dependencies":[{"id":6893632612,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6893632613,"package_name":"docker/metadata-action","ecosystem":"actions","requirements":"98669ae865ea3cffbcbaa878cf57c20bbf1c6c38","direct":true,"kind":"composite","optional":false},{"id":6893632614,"package_name":"docker/setup-buildx-action","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6893632615,"package_name":"docker/build-push-action","ecosystem":"actions","requirements":"ad44023a93711e3deb337508980b4b5e9bcdc5dc","direct":true,"kind":"composite","optional":false},{"id":6893632616,"package_name":"actions/upload-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6893632617,"package_name":"actions/setup-java","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6893632618,"package_name":"google-github-actions/auth","ecosystem":"actions","requirements":"v0","direct":true,"kind":"composite","optional":false},{"id":6893632619,"package_name":"google-github-actions/setup-gcloud","ecosystem":"actions","requirements":"v0","direct":true,"kind":"composite","optional":false},{"id":6893632620,"package_name":"./.github/actions/upload-gatk-test-results","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false},{"id":6893632621,"package_name":"actions/download-artifact","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6893632622,"package_name":"./.github/actions/install-cromwell","ecosystem":"actions","requirements":"*","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:18.543Z","updated_at":"2023-01-14T08:45:18.543Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/Dockerfile","dependencies":[{"id":6893632796,"package_name":"broadinstitute/gatk","ecosystem":"docker","requirements":"gatkbase-2.3.0","direct":true,"kind":"build","optional":false}]},{"ecosystem":"docker","filepath":"scripts/docker/gatkbase/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:19.036Z","updated_at":"2023-01-14T08:45:19.036Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/scripts/docker/gatkbase/Dockerfile","dependencies":[{"id":6893634839,"package_name":"ubuntu","ecosystem":"docker","requirements":"18.04","direct":true,"kind":"build","optional":false}]},{"ecosystem":"docker","filepath":"scripts/mitochondria_m2_wdl/Haplochecker/Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-14T08:45:19.380Z","updated_at":"2023-01-14T08:45:19.380Z","repository_link":"https://github.com/broadinstitute/gatk/blob/master/scripts/mitochondria_m2_wdl/Haplochecker/Dockerfile","dependencies":[{"id":6893634953,"package_name":"java","ecosystem":"docker","requirements":"openjdk-8-jre","direct":true,"kind":"build","optional":false}]}],"score":14.540342919196597,"created_at":"2025-09-09T00:56:33.635Z","updated_at":"2025-10-07T08:38:26.451Z","avatar_url":"https://github.com/broadinstitute.png","language":"Java","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["wdl","application","ga4gh","workflow-description-language","executor","workflow-execution","cromwell","pypi","vcf","argument-parser"],"project_url":"https://science.ecosyste.ms/api/v1/projects/160741","html_url":"https://science.ecosyste.ms/projects/160741"}