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wreleaser/scripts/wreleaser-darwin-amd64:1","Warn: binary detected: wreleaser/scripts/wreleaser-linux-amd64:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Info: jobLevel 'contents' permission set to 'read': .github/workflows/warp_test_workflow.yml:55","Warn: jobLevel 'actions' permission set to 'write': .github/workflows/warp_test_workflow.yml:57","Warn: no topLevel permission defined: .github/workflows/doc_publish.yml:1","Warn: no topLevel permission defined: .github/workflows/doc_test.yml:1","Warn: no topLevel permission defined: .github/workflows/merge_reminder.yml:1","Warn: no topLevel permission defined: .github/workflows/test_atac.yml:1","Warn: no topLevel permission defined: .github/workflows/test_cram_to_unmapped_bams.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/test_illumina_genotyping_array.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation_beagle.yml:1","Warn: no topLevel permission defined: .github/workflows/test_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multiome.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multisamplesmartseq2singlenucleus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_optimus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_pairedtag.yml:1","Warn: no topLevel permission defined: .github/workflows/test_peakcalling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_reblockGVCF.yml:1","Warn: no topLevel permission defined: .github/workflows/test_rna_with_umis.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slideseq.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slidetags.yml:1","Warn: no topLevel permission defined: .github/workflows/test_snm3c.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_cram_only.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_germline.yml:1","Warn: no topLevel permission defined: .github/workflows/test_variant_calling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/update_versions_file.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_changelog.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_version.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_release.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_test_workflow.yml:1","Warn: no topLevel permission defined: .github/workflows/womtool_check.yml:1"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact snm3C_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239097576","Warn: release artifact snm3C_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239097576"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 29 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:35: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:25: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:34: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:57: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:24: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:47: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_release.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_release.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:62: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:69: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/womtool_check.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/womtool_check.yml/develop?enable=pin","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bismark/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/bowtie2:2.3.4.3 to quay.io/broadinstitute/bowtie2:2.3.4.3@sha256:3686b5905fc79c76a26277b6c648d262b27cdd1b19632269f3e3d9c5ffe9c19a","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bisulfite-references/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bowtie2/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/samtools:1.9 to quay.io/broadinstitute/samtools:1.9@sha256:fa0c51a8fd4c046ad50c7e5fc120a6fd08d451dfd44ad1ef8538a56cb76ec89c","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:1: pin your Docker image by updating python:2 to python:2@sha256:cfa62318c459b1fde9e0841c619906d15ada5910d625176e24bf692cf8a2601d","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/picard/Dockerfile:1: pin your Docker image by updating alpine:3.8 to alpine:3.8@sha256:2bb501e6173d9d006e56de5bce2720eb06396803300fe1687b58a7ff32bf4c14","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/samtools/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/vcftoallc/Dockerfile:1: pin your Docker image by updating python:3.7.2 to python:3.7.2@sha256:1eecfb3b9cee73af760e00d3aa59bae76c4c0160ddb0213f14f7e0ae968e4835","Warn: containerImage not pinned by hash: deprecated/dockers/genomes_on_the_cloud/Dockerfile:1: pin your Docker image by updating us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian to us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian@sha256:bcdb1b039f9a3070c06191a4272732793f6156b9aded6ad74852d1d3623a99a2","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/biobambam2/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/bwa/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/samtools_nio/dockerfile:1: pin your Docker image by updating google/cloud-sdk:slim to google/cloud-sdk:slim@sha256:7f729a5f78e980d226cb4bf57944fe669c4b2b226cf7209a4e6814fac8e0309f","Warn: containerImage not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:1: pin your Docker image by updating python:3.7.7 to python:3.7.7@sha256:c1e36afba1c3c230a6846801fb284cf4383a8a0080fcf32c2ec625c066c56361","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:8-9","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:8-9","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/vcftoallc/Dockerfile:5","Warn: pipCommand not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:14","Warn: pipCommand not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:16-20","Warn: downloadThenRun not pinned by hash: scripts/generate_bge_exome_calling_regions.sh:12","Warn: pipCommand not pinned by hash: .github/workflows/warp_test_workflow.yml:78","Info:   0 out of  16 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   2 third-party GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of  12 containerImage dependencies pinned","Info:   0 out of   6 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Vulnerabilities","score":0,"reason":"15 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-wf5p-g6vw-rhxx","Warn: Project is vulnerable to: GHSA-jr5f-v2jv-69x6","Warn: Project is vulnerable to: GHSA-pfrx-2q88-qq97","Warn: Project is vulnerable to: GHSA-9c47-m6qq-7p4h","Warn: Project is vulnerable to: GHSA-f8q6-p94x-37v3","Warn: Project is vulnerable to: GHSA-rp65-9cf3-cjxr","Warn: Project is vulnerable to: GHSA-76c9-3jph-rj3q","Warn: Project is vulnerable to: GHSA-rhx6-c78j-4q9w","Warn: Project is vulnerable to: GHSA-9wv6-86v2-598j","Warn: Project is vulnerable to: GHSA-c2qf-rxjj-qqgw","Warn: Project is vulnerable to: GHSA-w5p7-h5w8-2hfq","Warn: Project is vulnerable to: GHSA-4v9v-hfq4-rm2v","Warn: Project is vulnerable to: GHSA-9jgg-88mc-972h","Warn: Project is vulnerable to: GHSA-6fc8-4gx4-v693","Warn: Project is vulnerable to: GHSA-3h5v-q93c-6h6q"],"documentation":{"short":"Determines if the project has open, known unfixed 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workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":10,"reason":"30 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":10,"reason":"all changesets reviewed","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Dangerous-Workflow","score":0,"reason":"dangerous workflow patterns detected","details":["Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84","Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84","Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84"],"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":8,"reason":"binaries present in source code","details":["Warn: binary detected: wreleaser/scripts/wreleaser-darwin-amd64:1","Warn: binary detected: wreleaser/scripts/wreleaser-linux-amd64:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Info: jobLevel 'contents' permission set to 'read': .github/workflows/warp_test_workflow.yml:55","Warn: jobLevel 'actions' permission set to 'write': .github/workflows/warp_test_workflow.yml:57","Warn: no topLevel permission defined: .github/workflows/doc_publish.yml:1","Warn: no topLevel permission defined: .github/workflows/doc_test.yml:1","Warn: no topLevel permission defined: .github/workflows/merge_reminder.yml:1","Warn: no topLevel permission defined: .github/workflows/test_atac.yml:1","Warn: no topLevel permission defined: .github/workflows/test_cram_to_unmapped_bams.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/test_illumina_genotyping_array.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation_beagle.yml:1","Warn: no topLevel permission defined: .github/workflows/test_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multiome.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multisamplesmartseq2singlenucleus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_optimus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_pairedtag.yml:1","Warn: no topLevel permission defined: .github/workflows/test_peakcalling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_reblockGVCF.yml:1","Warn: no topLevel permission defined: .github/workflows/test_rna_with_umis.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slideseq.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slidetags.yml:1","Warn: no topLevel permission defined: .github/workflows/test_snm3c.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_cram_only.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_germline.yml:1","Warn: no topLevel permission defined: .github/workflows/test_variant_calling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/update_versions_file.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_changelog.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_version.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_release.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_test_workflow.yml:1","Warn: no topLevel permission defined: .github/workflows/womtool_check.yml:1"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact snm3C_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239097576","Warn: release artifact snm3C_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239097576"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 29 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:35: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:25: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:34: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:57: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:24: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:47: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_release.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_release.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:62: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:69: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/womtool_check.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/womtool_check.yml/develop?enable=pin","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bismark/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/bowtie2:2.3.4.3 to quay.io/broadinstitute/bowtie2:2.3.4.3@sha256:3686b5905fc79c76a26277b6c648d262b27cdd1b19632269f3e3d9c5ffe9c19a","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bisulfite-references/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bowtie2/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/samtools:1.9 to quay.io/broadinstitute/samtools:1.9@sha256:fa0c51a8fd4c046ad50c7e5fc120a6fd08d451dfd44ad1ef8538a56cb76ec89c","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:1: pin your Docker image by updating python:2 to python:2@sha256:cfa62318c459b1fde9e0841c619906d15ada5910d625176e24bf692cf8a2601d","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/picard/Dockerfile:1: pin your Docker image by updating alpine:3.8 to alpine:3.8@sha256:2bb501e6173d9d006e56de5bce2720eb06396803300fe1687b58a7ff32bf4c14","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/samtools/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/vcftoallc/Dockerfile:1: pin your Docker image by updating python:3.7.2 to python:3.7.2@sha256:1eecfb3b9cee73af760e00d3aa59bae76c4c0160ddb0213f14f7e0ae968e4835","Warn: containerImage not pinned by hash: deprecated/dockers/genomes_on_the_cloud/Dockerfile:1: pin your Docker image by updating us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian to us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian@sha256:bcdb1b039f9a3070c06191a4272732793f6156b9aded6ad74852d1d3623a99a2","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/biobambam2/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/bwa/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/samtools_nio/dockerfile:1: pin your Docker image by updating google/cloud-sdk:slim to google/cloud-sdk:slim@sha256:7f729a5f78e980d226cb4bf57944fe669c4b2b226cf7209a4e6814fac8e0309f","Warn: containerImage not pinned by hash: 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merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Dangerous-Workflow","score":0,"reason":"dangerous workflow patterns detected","details":["Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84","Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84","Warn: script injection with untrusted input ' github.head_ref ': .github/workflows/warp_test_workflow.yml:84"],"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Binary-Artifacts","score":8,"reason":"binaries present in source code","details":["Warn: binary detected: wreleaser/scripts/wreleaser-darwin-amd64:1","Warn: binary detected: wreleaser/scripts/wreleaser-linux-amd64:1"],"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Info: jobLevel 'contents' permission set to 'read': .github/workflows/warp_test_workflow.yml:55","Warn: jobLevel 'actions' permission set to 'write': .github/workflows/warp_test_workflow.yml:57","Warn: no topLevel permission defined: .github/workflows/doc_publish.yml:1","Warn: no topLevel permission defined: .github/workflows/doc_test.yml:1","Warn: no topLevel permission defined: .github/workflows/merge_reminder.yml:1","Warn: no topLevel permission defined: .github/workflows/test_atac.yml:1","Warn: no topLevel permission defined: .github/workflows/test_cram_to_unmapped_bams.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_exome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/test_illumina_genotyping_array.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation.yml:1","Warn: no topLevel permission defined: .github/workflows/test_imputation_beagle.yml:1","Warn: no topLevel permission defined: .github/workflows/test_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multiome.yml:1","Warn: no topLevel permission defined: .github/workflows/test_multisamplesmartseq2singlenucleus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_optimus.yml:1","Warn: no topLevel permission defined: .github/workflows/test_pairedtag.yml:1","Warn: no topLevel permission defined: .github/workflows/test_peakcalling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_reblockGVCF.yml:1","Warn: no topLevel permission defined: .github/workflows/test_rna_with_umis.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slideseq.yml:1","Warn: no topLevel permission defined: .github/workflows/test_slidetags.yml:1","Warn: no topLevel permission defined: .github/workflows/test_snm3c.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_joint_genotyping.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_cram_only.yml:1","Warn: no topLevel permission defined: .github/workflows/test_ultima_genomics_whole_genome_germline.yml:1","Warn: no topLevel permission defined: .github/workflows/test_variant_calling.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_germline_single_sample.yml:1","Warn: no topLevel permission defined: .github/workflows/test_whole_genome_reprocessing.yml:1","Warn: no topLevel permission defined: .github/workflows/update_versions_file.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_changelog.yml:1","Warn: no topLevel permission defined: .github/workflows/validate_version.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_release.yml:1","Warn: no topLevel permission defined: .github/workflows/warp_test_workflow.yml:1","Warn: no topLevel permission defined: .github/workflows/womtool_check.yml:1"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact snm3C_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop not signed: https://api.github.com/repos/broadinstitute/warp/releases/239097576","Warn: release artifact snm3C_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239426829","Warn: release artifact atac_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386480","Warn: release artifact PairedTag_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386412","Warn: release artifact Multiome_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239386442","Warn: release artifact Imputation_develop does not have provenance: https://api.github.com/repos/broadinstitute/warp/releases/239097576"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"SAST","score":9,"reason":"SAST tool is not run on all commits -- score normalized to 9","details":["Warn: 29 commits out of 30 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:21: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/doc_publish.yml:35: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_publish.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:15: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/doc_test.yml:25: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/doc_test.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:19: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/update_versions_file.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/update_versions_file.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:34: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_changelog.yml:57: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_changelog.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:24: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/validate_version.yml:47: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/validate_version.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_release.yml:26: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_release.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:62: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:69: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/warp_test_workflow.yml:141: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/warp_test_workflow.yml/develop?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/womtool_check.yml:16: update your workflow using https://app.stepsecurity.io/secureworkflow/broadinstitute/warp/womtool_check.yml/develop?enable=pin","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bismark/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/bowtie2:2.3.4.3 to quay.io/broadinstitute/bowtie2:2.3.4.3@sha256:3686b5905fc79c76a26277b6c648d262b27cdd1b19632269f3e3d9c5ffe9c19a","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bisulfite-references/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/bowtie2/Dockerfile:1: pin your Docker image by updating quay.io/broadinstitute/samtools:1.9 to quay.io/broadinstitute/samtools:1.9@sha256:fa0c51a8fd4c046ad50c7e5fc120a6fd08d451dfd44ad1ef8538a56cb76ec89c","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:1: pin your Docker image by updating python:2 to python:2@sha256:cfa62318c459b1fde9e0841c619906d15ada5910d625176e24bf692cf8a2601d","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/picard/Dockerfile:1: pin your Docker image by updating alpine:3.8 to alpine:3.8@sha256:2bb501e6173d9d006e56de5bce2720eb06396803300fe1687b58a7ff32bf4c14","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/samtools/Dockerfile:1: pin your Docker image by updating continuumio/miniconda3:4.5.11 to continuumio/miniconda3:4.5.11@sha256:d7ab0b98c5adad49ed5dabf11a93d53361f08445b998945d80d351b417d4e0ba","Warn: containerImage not pinned by hash: deprecated/dockers/cemba/vcftoallc/Dockerfile:1: pin your Docker image by updating python:3.7.2 to python:3.7.2@sha256:1eecfb3b9cee73af760e00d3aa59bae76c4c0160ddb0213f14f7e0ae968e4835","Warn: containerImage not pinned by hash: deprecated/dockers/genomes_on_the_cloud/Dockerfile:1: pin your Docker image by updating us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian to us.gcr.io/broad-dsp-gcr-public/base/jre:8-debian@sha256:bcdb1b039f9a3070c06191a4272732793f6156b9aded6ad74852d1d3623a99a2","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/biobambam2/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/bwa/Dockerfile:1: pin your Docker image by updating ubuntu:bionic-20180426 to ubuntu:bionic-20180426@sha256:c8c275751219dadad8fa56b3ac41ca6cb22219ff117ca98fe82b42f24e1ba64e","Warn: containerImage not pinned by hash: deprecated/pipelines/gdc_genome/samtools_nio/dockerfile:1: pin your Docker image by updating google/cloud-sdk:slim to google/cloud-sdk:slim@sha256:7f729a5f78e980d226cb4bf57944fe669c4b2b226cf7209a4e6814fac8e0309f","Warn: containerImage not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:1: pin your Docker image by updating python:3.7.7 to python:3.7.7@sha256:c1e36afba1c3c230a6846801fb284cf4383a8a0080fcf32c2ec625c066c56361","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:8-9","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/cutadapt/Dockerfile:8-9","Warn: pipCommand not pinned by hash: deprecated/dockers/cemba/vcftoallc/Dockerfile:5","Warn: pipCommand not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:14","Warn: pipCommand not pinned by hash: pipelines/skylab/optimus/scripts/Dockerfile:16-20","Warn: downloadThenRun not pinned by hash: scripts/generate_bge_exome_calling_regions.sh:12","Warn: pipCommand not pinned by hash: .github/workflows/warp_test_workflow.yml:78","Info:   0 out of  16 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   2 third-party GitHubAction dependencies pinned","Info:   0 out of   1 downloadThenRun dependencies pinned","Info:   0 out of  12 containerImage dependencies pinned","Info:   0 out of   6 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Vulnerabilities","score":0,"reason":"15 existing vulnerabilities detected","details":["Warn: Project is vulnerable to: GHSA-wf5p-g6vw-rhxx","Warn: Project is vulnerable to: GHSA-jr5f-v2jv-69x6","Warn: Project is vulnerable to: GHSA-pfrx-2q88-qq97","Warn: Project is vulnerable to: GHSA-9c47-m6qq-7p4h","Warn: Project is vulnerable to: GHSA-f8q6-p94x-37v3","Warn: Project is vulnerable to: GHSA-rp65-9cf3-cjxr","Warn: Project is vulnerable to: GHSA-76c9-3jph-rj3q","Warn: Project is vulnerable to: GHSA-rhx6-c78j-4q9w","Warn: Project is vulnerable to: GHSA-9wv6-86v2-598j","Warn: Project is vulnerable to: GHSA-c2qf-rxjj-qqgw","Warn: Project is vulnerable to: GHSA-w5p7-h5w8-2hfq","Warn: Project is vulnerable to: GHSA-4v9v-hfq4-rm2v","Warn: Project is vulnerable to: GHSA-9jgg-88mc-972h","Warn: Project is vulnerable to: GHSA-6fc8-4gx4-v693","Warn: Project is vulnerable to: GHSA-3h5v-q93c-6h6q"],"documentation":{"short":"Determines if the project has open, known unfixed 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