{"id":164036,"name":null,"description":"An accurate and trainable end-to-end protein-ligand docking framework","url":"https://github.com/bytedance/protenix-dock","last_synced_at":"2025-09-09T19:18:18.542Z","repository":{"id":278893085,"uuid":"935422206","full_name":"bytedance/Protenix-Dock","owner":"bytedance","description":"An accurate and trainable end-to-end protein-ligand docking framework","archived":false,"fork":false,"pushed_at":"2025-03-24T06:30:20.000Z","size":6622,"stargazers_count":71,"open_issues_count":4,"forks_count":7,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-03-24T07:35:05.302Z","etag":null,"topics":["molecular-docking","research"],"latest_commit_sha":null,"homepage":"","language":"C++","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bytedance.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null}},"created_at":"2025-02-19T12:21:33.000Z","updated_at":"2025-03-24T06:30:26.000Z","dependencies_parsed_at":"2025-03-24T07:27:45.246Z","dependency_job_id":"9b55280c-cc26-48fc-a8b6-1557eff55b85","html_url":"https://github.com/bytedance/Protenix-Dock","commit_stats":null,"previous_names":["bytedance/protenix-dock"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bytedance/Protenix-Dock","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bytedance","download_url":"https://codeload.github.com/bytedance/Protenix-Dock/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274348181,"owners_count":25268972,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bytedance","name":"Bytedance Inc.","uuid":"4158466","kind":"organization","description":"","email":null,"website":"https://opensource.bytedance.com","location":"Singapore","twitter":"ByteDanceOSS","company":null,"icon_url":"https://avatars.githubusercontent.com/u/4158466?v=4","repositories_count":255,"last_synced_at":"2024-04-16T02:59:18.813Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bytedance","funding_links":[],"total_stars":88648,"followers":6017,"following":0,"created_at":"2022-11-13T11:29:28.707Z","updated_at":"2024-04-16T03:00:36.055Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bytedance","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bytedance/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bytedance/Protenix-Dock","html_url":"https://github.com/bytedance/Protenix-Dock","last_synced_at":"2025-08-31T18:34:13.751Z","status":null,"issues_count":13,"pull_requests_count":5,"avg_time_to_close_issue":699948.8,"avg_time_to_close_pull_request":201795.0,"issues_closed_count":5,"pull_requests_closed_count":2,"pull_request_authors_count":1,"issue_authors_count":9,"avg_comments_per_issue":0.9230769230769231,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":13,"past_year_pull_requests_count":5,"past_year_avg_time_to_close_issue":699948.8,"past_year_avg_time_to_close_pull_request":201795.0,"past_year_issues_closed_count":5,"past_year_pull_requests_closed_count":2,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":9,"past_year_avg_comments_per_issue":0.9230769230769231,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2025-08-29T18:15:58.889Z","updated_at":"2025-08-31T18:34:13.752Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bytedance%2FProtenix-Dock/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":13},"pull_request_author_associations_count":{"NONE":5},"issue_authors":{"sky1ove":4,"Bruce410526":2,"Jason-Han-Hu":1,"JUrban64":1,"Furaxixi":1,"zengdashi":1,"Amshoreline":1,"rongfengzou":1,"CLG68":1},"pull_request_authors":{"thalahors":5},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10197929,"issues_count":32275653,"pull_requests_count":101879419,"authors_count":10740965,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":13},"past_year_pull_request_author_associations_count":{"NONE":5},"past_year_issue_authors":{"sky1ove":4,"Bruce410526":2,"Amshoreline":1,"CLG68":1,"Furaxixi":1,"Jason-Han-Hu":1,"JUrban64":1,"rongfengzou":1,"zengdashi":1},"past_year_pull_request_authors":{"thalahors":5},"maintainers":[],"active_maintainers":[]},"events":{"total":{"IssuesEvent":19,"WatchEvent":97,"MemberEvent":1,"IssueCommentEvent":15,"PushEvent":7,"PublicEvent":1,"PullRequestEvent":7,"ForkEvent":11},"last_year":{"IssuesEvent":19,"WatchEvent":97,"MemberEvent":1,"IssueCommentEvent":15,"PushEvent":7,"PublicEvent":1,"PullRequestEvent":7,"ForkEvent":11}},"keywords":["molecular-docking","research"],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2025-02-22T11:36:41.560Z","updated_at":"2025-02-22T11:36:41.560Z","repository_link":"https://github.com/bytedance/Protenix-Dock/blob/main/requirements.txt","dependencies":[{"id":21983388999,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=1.3.5","direct":true,"kind":"runtime","optional":false},{"id":21983389000,"package_name":"tos","ecosystem":"pypi","requirements":"\u003e=2.6.0","direct":true,"kind":"runtime","optional":false},{"id":21983389053,"package_name":"func-timeout","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389112,"package_name":"parmed","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389185,"package_name":"pdb4amber","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389281,"package_name":"MDAnalysis","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389427,"package_name":"PyYaml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389595,"package_name":"pdb2pqr","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389596,"package_name":"meeko","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":21983389704,"package_name":"pytest","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2025-02-22T11:36:44.295Z","updated_at":"2025-02-22T11:36:44.295Z","repository_link":"https://github.com/bytedance/Protenix-Dock/blob/main/setup.py","dependencies":[]},{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-24T07:27:35.935Z","updated_at":"2025-03-24T07:27:35.935Z","repository_link":"https://github.com/bytedance/Protenix-Dock/blob/main/environment.yml","dependencies":[{"id":22394703075,"package_name":"ambertools","ecosystem":"conda","requirements":"23.*","direct":true,"kind":"runtime","optional":false},{"id":22394703112,"package_name":"boost","ecosystem":"conda","requirements":"1.82.*","direct":true,"kind":"runtime","optional":false},{"id":22394703328,"package_name":"cmake","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703384,"package_name":"curl","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703385,"package_name":"numpy","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703386,"package_name":"openssl","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703387,"package_name":"pandas","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703388,"package_name":"pip","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703389,"package_name":"python","ecosystem":"conda","requirements":"\u003e=3.9,\u003c3.12","direct":true,"kind":"runtime","optional":false},{"id":22394703390,"package_name":"sphinx","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703418,"package_name":"sphinx_rtd_theme","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22394703419,"package_name":"swig","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-09T01:06:29.619Z","updated_at":"2025-10-07T08:38:59.025Z","avatar_url":"https://github.com/bytedance.png","language":"C++","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/164036","html_url":"https://science.ecosyste.ms/projects/164036"}