{"id":16567,"name":"germline-structuralv-nf","description":"Germline structural variant calling pipeline for short read WGS datasets","url":"https://github.com/sydney-informatics-hub/germline-structuralv-nf","last_synced_at":"2025-09-04T23:16:02.195Z","repository":{"id":61677432,"uuid":"503958144","full_name":"Sydney-Informatics-Hub/Germline-StructuralV-nf","owner":"Sydney-Informatics-Hub","description":"Germline structural variant calling pipeline for short read WGS datasets","archived":false,"fork":false,"pushed_at":"2024-10-23T02:04:24.000Z","size":1242,"stargazers_count":5,"open_issues_count":6,"forks_count":5,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-04-12T08:25:17.511Z","etag":null,"topics":["annotsv","australian-biocommons","bam","bioinformatics","dsl2","genomics","germline-variant-calling","manta","nextflow","ngs","pipeline","smoove","structural-variants","survivor","tiddit","workflow"],"latest_commit_sha":null,"homepage":"","language":"Nextflow","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Sydney-Informatics-Hub.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-06-16T00:11:17.000Z","updated_at":"2025-01-06T22:14:47.000Z","dependencies_parsed_at":"2023-10-27T08:34:04.418Z","dependency_job_id":"9f8a5064-9489-4979-ad8d-d9a424507e75","html_url":"https://github.com/Sydney-Informatics-Hub/Germline-StructuralV-nf","commit_stats":null,"previous_names":[],"tags_count":3,"template":false,"template_full_name":null,"purl":"pkg:github/Sydney-Informatics-Hub/Germline-StructuralV-nf","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Sydney-Informatics-Hub%2FGermline-StructuralV-nf","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Sydney-Informatics-Hub%2FGermline-StructuralV-nf/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Sydney-Informatics-Hub%2FGermline-StructuralV-nf/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Sydney-Informatics-Hub%2FGermline-StructuralV-nf/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Sydney-Informatics-Hub","download_url":"https://codeload.github.com/Sydney-Informatics-Hub/Germline-StructuralV-nf/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Sydney-Informatics-Hub%2FGermline-StructuralV-nf/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273685642,"owners_count":25149729,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Sydney-Informatics-Hub","name":"Sydney Informatics Hub","uuid":"38518764","kind":"organization","description":"The Sydney Informatics Hub is a Core Research Facility of the University of Sydney, providing training and expertise on research data, analysis and computing.","email":"sih.admin@sydney.edu.au","website":"https://sydney.edu.au/sydney-informatics-hub","location":"University of Sydney, Sydney Australia","twitter":"Sydney_CRF","company":null,"icon_url":"https://avatars.githubusercontent.com/u/38518764?v=4","repositories_count":189,"last_synced_at":"2024-04-16T02:54:03.709Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Sydney-Informatics-Hub","funding_links":[],"total_stars":114,"followers":67,"following":0,"created_at":"2022-11-14T22:40:20.184Z","updated_at":"2024-04-16T02:55:08.059Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Sydney-Informatics-Hub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Sydney-Informatics-Hub/repositories"},"packages":[],"commits":{"id":6553706,"full_name":"sydney-informatics-hub/germline-structuralv-nf","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-21T19:21:52.144Z","updated_at":"2024-11-21T19:21:52.144Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/sydney-informatics-hub%2Fgermline-structuralv-nf/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"sydney-informatics-hub/germline-structuralv-nf","html_url":"https://github.com/sydney-informatics-hub/germline-structuralv-nf","last_synced_at":"2025-08-31T13:10:33.371Z","status":null,"issues_count":31,"pull_requests_count":46,"avg_time_to_close_issue":3299052.56,"avg_time_to_close_pull_request":166596.73913043478,"issues_closed_count":25,"pull_requests_closed_count":46,"pull_request_authors_count":4,"issue_authors_count":5,"avg_comments_per_issue":0.7741935483870968,"avg_comments_per_pull_request":0.043478260869565216,"merged_pull_requests_count":45,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":1245370.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":1,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":1.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":1,"created_at":"2024-11-21T19:22:32.820Z","updated_at":"2025-09-02T14:08:47.729Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sydney-informatics-hub%2Fgermline-structuralv-nf","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/sydney-informatics-hub%2Fgermline-structuralv-nf/issues","issue_labels_count":{"enhancement":10,"wontfix":1,"bug":1},"pull_request_labels_count":{"enhancement":2},"issue_author_associations_count":{"MEMBER":21,"COLLABORATOR":7,"NONE":2},"pull_request_author_associations_count":{"MEMBER":29,"COLLABORATOR":11,"CONTRIBUTOR":3,"NONE":1},"issue_authors":{"georgiesamaha":21,"calizilla":6,"mathob":1,"SarahBeecroft":1,"gavinmonahan":1},"pull_request_authors":{"georgiesamaha":29,"SarahBeecroft":11,"chlu0571":2,"juanesarango":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10062770,"issues_count":31096038,"pull_requests_count":94471412,"authors_count":10686459,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":1},"past_year_pull_request_author_associations_count":{"NONE":1,"CONTRIBUTOR":1},"past_year_issue_authors":{"mathob":1},"past_year_pull_request_authors":{"juanesarango":2},"maintainers":[{"login":"georgiesamaha","count":50,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/georgiesamaha"},{"login":"SarahBeecroft","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/SarahBeecroft"},{"login":"calizilla","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/calizilla"}],"active_maintainers":[]},"events":{"total":{"CreateEvent":1,"IssuesEvent":1,"ReleaseEvent":1,"WatchEvent":2,"IssueCommentEvent":1,"PushEvent":1,"PullRequestEvent":1},"last_year":{"CreateEvent":1,"IssuesEvent":1,"ReleaseEvent":1,"WatchEvent":2,"IssueCommentEvent":1,"PushEvent":1,"PullRequestEvent":1}},"keywords":["annotsv","australian-biocommons","bam","bioinformatics","dsl2","genomics","germline-variant-calling","manta","nextflow","ngs","pipeline","smoove","structural-variants","survivor","tiddit","workflow"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:50:47.594Z","updated_at":"2025-10-07T08:08:47.049Z","avatar_url":"https://github.com/Sydney-Informatics-Hub.png","language":"Nextflow","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.48546/WORKFLOWHUB.WORKFLOW.431.1"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/16567","html_url":"https://science.ecosyste.ms/projects/16567"}