{"id":169929,"name":null,"description":":computer::computer::computer: A commandline tool for analysis of big biological data sets for distributed HPC clusters.","url":"https://github.com/cbg-ethz/pybda","last_synced_at":"2025-09-09T21:15:40.278Z","repository":{"id":57467036,"uuid":"140821515","full_name":"cbg-ethz/pybda","owner":"cbg-ethz","description":":computer::computer::computer: A commandline tool for analysis of big biological data sets for distributed HPC clusters.","archived":false,"fork":false,"pushed_at":"2024-10-15T18:44:45.000Z","size":379759,"stargazers_count":9,"open_issues_count":7,"forks_count":3,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-24T18:38:31.060Z","etag":null,"topics":["apache-spark","big-data","machine-learning","python","snakemake"],"latest_commit_sha":null,"homepage":"https://pybda.rtfd.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cbg-ethz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"code-of-conduct.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-07-13T08:43:10.000Z","updated_at":"2023-04-28T14:47:28.000Z","dependencies_parsed_at":"2025-06-07T01:35:00.911Z","dependency_job_id":"76a2de2c-bcf7-4580-929e-a7e46bc1456a","html_url":"https://github.com/cbg-ethz/pybda","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/cbg-ethz/pybda","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/sbom","scorecard":{"id":268529,"data":{"date":"2025-08-11","repo":{"name":"github.com/cbg-ethz/pybda","commit":"5ae9ccf49a44b9342bad7694e039c76c23499bb2"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}}]},"last_synced_at":"2025-08-17T12:47:08.089Z","repository_id":57467036,"created_at":"2025-08-17T12:47:08.089Z","updated_at":"2025-08-17T12:47:08.089Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274365945,"owners_count":25272293,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-09T02:00:10.223Z","response_time":80,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cbg-ethz","name":"Computational Biology Group (CBG)","uuid":"12068026","kind":"organization","description":"Beerenwinkel Lab at ETH Zurich","email":null,"website":"https://www.bsse.ethz.ch/cbg","location":"Basel, Switzerland","twitter":"cbg_ethz","company":null,"icon_url":"https://avatars.githubusercontent.com/u/12068026?v=4","repositories_count":91,"last_synced_at":"2024-03-26T08:09:56.763Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cbg-ethz","funding_links":[],"total_stars":745,"followers":45,"following":0,"created_at":"2022-11-03T10:35:20.159Z","updated_at":"2024-03-26T08:10:12.972Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz/repositories"},"packages":[{"id":2865768,"name":"pybda","ecosystem":"pypi","description":"Analysis of big biological data sets for distributed HPC clusters.","homepage":"https://github.com/cbg-ethz/pybda","licenses":"GPLv3","normalized_licenses":["GPL-3.0"],"repository_url":"https://github.com/cbg-ethz/pybda","keywords_array":["bigdata","analysis","pipeline","workflow","spark","pyspark","machinelearning"],"namespace":null,"versions_count":6,"first_release_published_at":"2019-02-11T15:39:22.000Z","latest_release_published_at":"2019-08-14T20:45:41.000Z","latest_release_number":"0.1.0","last_synced_at":"2025-08-24T14:22:10.141Z","created_at":"2022-04-10T12:09:56.210Z","updated_at":"2025-08-24T22:49:54.801Z","registry_url":"https://pypi.org/project/pybda/","install_command":"pip install pybda --index-url https://pypi.org/simple","documentation_url":"https://pybda.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 3 - Alpha","Environment :: Console","Intended Audience :: End Users/Desktop","License :: OSI Approved :: GNU General Public License v3 (GPLv3)","Programming Language :: Python :: 3","Programming Language :: Python :: 3.4","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6"],"normalized_name":"pybda","project_status":null},"repo_metadata":{"id":57467036,"uuid":"140821515","full_name":"cbg-ethz/pybda","owner":"cbg-ethz","description":":computer::computer::computer: A commandline tool for analysis of big biological data sets for distributed HPC clusters.","archived":false,"fork":false,"pushed_at":"2024-10-15T18:44:45.000Z","size":379759,"stargazers_count":9,"open_issues_count":7,"forks_count":4,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-07-24T10:31:36.136Z","etag":null,"topics":["apache-spark","big-data","machine-learning","python","snakemake"],"latest_commit_sha":null,"homepage":"https://pybda.rtfd.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cbg-ethz.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":"code-of-conduct.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2018-07-13T08:43:10.000Z","updated_at":"2023-04-28T14:47:28.000Z","dependencies_parsed_at":"2025-06-07T01:35:00.911Z","dependency_job_id":"76a2de2c-bcf7-4580-929e-a7e46bc1456a","html_url":"https://github.com/cbg-ethz/pybda","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/cbg-ethz/pybda","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/sbom","scorecard":{"id":268529,"data":{"date":"2025-08-11","repo":{"name":"github.com/cbg-ethz/pybda","commit":"5ae9ccf49a44b9342bad7694e039c76c23499bb2"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3,"checks":[{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 0/30 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"SAST","score":0,"reason":"no SAST tool detected","details":["Warn: no pull requests merged into dev branch"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: GNU General Public License v3.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}}]},"last_synced_at":"2025-08-17T12:47:08.089Z","repository_id":57467036,"created_at":"2025-08-17T12:47:08.089Z","updated_at":"2025-08-17T12:47:08.089Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":271894325,"owners_count":24840059,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-08-24T02:00:11.135Z","response_time":111,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"cbg-ethz","name":"Computational Biology Group (CBG)","uuid":"12068026","kind":"organization","description":"Beerenwinkel Lab at ETH Zurich","email":null,"website":"https://www.bsse.ethz.ch/cbg","location":"Basel, Switzerland","twitter":"cbg_ethz","company":null,"icon_url":"https://avatars.githubusercontent.com/u/12068026?v=4","repositories_count":91,"last_synced_at":"2024-03-26T08:09:56.763Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cbg-ethz","funding_links":[],"total_stars":745,"followers":45,"following":0,"created_at":"2022-11-03T10:35:20.159Z","updated_at":"2024-03-26T08:10:12.972Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cbg-ethz/repositories"},"tags":[{"name":"v0.1.0","sha":"5a8d54af37aaf4fbd585bd8edd01edb164fc1433","kind":"commit","published_at":"2019-08-09T13:34:29.000Z","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/v0.1.0","html_url":"https://github.com/cbg-ethz/pybda/releases/tag/v0.1.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cbg-ethz/pybda@v0.1.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.1.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.1.0/manifests"},{"name":"v0.0.6","sha":"2750f6d4b0fe13cee76966d02121070321640cef","kind":"commit","published_at":"2019-03-29T15:03:56.000Z","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/v0.0.6","html_url":"https://github.com/cbg-ethz/pybda/releases/tag/v0.0.6","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cbg-ethz/pybda@v0.0.6","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.6","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.6/manifests"},{"name":"v0.0.5","sha":"49e9f04f89c4a6f2bed9eca00721e4ef9942c51f","kind":"commit","published_at":"2019-02-23T16:39:22.000Z","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/v0.0.5","html_url":"https://github.com/cbg-ethz/pybda/releases/tag/v0.0.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cbg-ethz/pybda@v0.0.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.5/manifests"},{"name":"v0.0.4","sha":"db2652779938bb366d27f02d20876b35ad60d417","kind":"commit","published_at":"2019-02-18T14:48:25.000Z","download_url":"https://codeload.github.com/cbg-ethz/pybda/tar.gz/v0.0.4","html_url":"https://github.com/cbg-ethz/pybda/releases/tag/v0.0.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/cbg-ethz/pybda@v0.0.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/tags/v0.0.4/manifests"}]},"repo_metadata_updated_at":"2025-08-24T22:49:54.801Z","dependent_packages_count":0,"downloads":26,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":67.96082960304659,"dependent_repos_count":21.619800316896704,"dependent_packages_count":10.082087700208083,"stargazers_count":17.689829078428453,"forks_count":15.317860592616913,"docker_downloads_count":null,"average":26.53408145823935},"purl":"pkg:pypi/pybda","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pybda","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pybda","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pybda/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-24T15:08:31.094Z","issues_count":18,"pull_requests_count":2,"avg_time_to_close_issue":979702.6666666666,"avg_time_to_close_pull_request":60866251.0,"issues_closed_count":12,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":0.16666666666666666,"avg_comments_per_pull_request":0.5,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":1,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/issues","maintainers":[{"login":"dirmeier","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dirmeier"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pybda/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pybda/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pybda/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pybda/related_packages","maintainers":[{"uuid":"dirmeier","login":"dirmeier","name":null,"email":null,"url":null,"packages_count":10,"html_url":"https://pypi.org/user/dirmeier/","role":null,"created_at":"2023-02-25T02:46:42.077Z","updated_at":"2023-02-25T02:46:42.077Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/dirmeier/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":726714,"maintainers_count":308881,"namespaces_count":0,"keywords_count":238369,"github":"pypi","metadata":{"funded_packages_count":50594},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-09T06:31:19.922Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":634879,"full_name":"cbg-ethz/pybda","default_branch":"master","committers":[{"name":"dirmeier","email":"simon.dirmeier@bsse.ethz.ch","login":null,"count":778},{"name":"Simon Dirmeier","email":"simon.dirmeier@web.de","login":"dirmeier","count":205},{"name":"Simon Dirmeier","email":"simondi@lo-login-02.leonhard.ethz.ch","login":null,"count":1},{"name":"Simon Dirmeier","email":"simondi@lo-login-01.leonhard.ethz.ch","login":null,"count":1}],"total_commits":985,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":246.25,"dds":0.21015228426395938,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-07-24T08:11:48.950Z","last_synced_commit":"5ae9ccf49a44b9342bad7694e039c76c23499bb2","created_at":"2023-03-09T08:33:40.010Z","updated_at":"2025-07-24T08:11:58.711Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:17:06.873Z","repositories_count":5537895,"commits_count":874610347,"contributors_count":32275623,"owners_count":918967,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cbg-ethz/pybda","html_url":"https://github.com/cbg-ethz/pybda","last_synced_at":"2025-08-24T15:08:31.094Z","status":"error","issues_count":18,"pull_requests_count":2,"avg_time_to_close_issue":979702.6666666666,"avg_time_to_close_pull_request":60866251.0,"issues_closed_count":12,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":1,"avg_comments_per_issue":0.16666666666666666,"avg_comments_per_pull_request":0.5,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":1,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":1,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T23:04:59.592Z","updated_at":"2025-09-02T12:38:35.249Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cbg-ethz%2Fpybda/issues","issue_labels_count":{"enhancement":7,"bug":1},"pull_request_labels_count":{"dependencies":4},"issue_author_associations_count":{"MEMBER":18},"pull_request_author_associations_count":{"NONE":4},"issue_authors":{"dirmeier":18},"pull_request_authors":{"dependabot[bot]":4},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-08T00:00:17.013Z","repositories_count":10169215,"issues_count":32005599,"pull_requests_count":100257684,"authors_count":10730947,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":2},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":2},"past_year_issue_authors":{},"past_year_pull_request_authors":{"dependabot[bot]":2},"maintainers":[{"login":"dirmeier","count":18,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/dirmeier"}],"active_maintainers":[]},"events":{"total":{"DeleteEvent":1,"IssueCommentEvent":1,"PullRequestEvent":2,"CreateEvent":1},"last_year":{"DeleteEvent":1,"IssueCommentEvent":1,"PullRequestEvent":2,"CreateEvent":1}},"keywords":["apache-spark","big-data","machine-learning","python","snakemake"],"dependencies":[{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-09-10T03:43:39.507Z","updated_at":"2022-09-10T03:43:39.507Z","repository_link":"https://github.com/cbg-ethz/pybda/blob/master/docs/requirements.txt","dependencies":[{"id":4359165923,"package_name":"sphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4359165924,"package_name":"sphinx_fontawesome","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4359165925,"package_name":"sphinxcontrib-fulltoc","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4359165926,"package_name":"nbsphinx","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-10T03:43:39.611Z","updated_at":"2022-09-10T03:43:39.611Z","repository_link":"https://github.com/cbg-ethz/pybda/blob/master/setup.py","dependencies":[{"id":4359168210,"package_name":"click","ecosystem":"pypi","requirements":"\u003e=6.7","direct":true,"kind":"runtime","optional":false},{"id":4359168211,"package_name":"joypy","ecosystem":"pypi","requirements":"\u003e=0.1.9","direct":true,"kind":"runtime","optional":false},{"id":4359168212,"package_name":"matplotlib","ecosystem":"pypi","requirements":"\u003e=2.2.3","direct":true,"kind":"runtime","optional":false},{"id":4359168213,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.15.0","direct":true,"kind":"runtime","optional":false},{"id":4359168214,"package_name":"pandas","ecosystem":"pypi","requirements":"\u003e=0.23.3","direct":true,"kind":"runtime","optional":false},{"id":4359168215,"package_name":"pyspark","ecosystem":"pypi","requirements":"==2.4.0","direct":true,"kind":"runtime","optional":false},{"id":4359168216,"package_name":"scipy","ecosystem":"pypi","requirements":"\u003e=1.0.0","direct":true,"kind":"runtime","optional":false},{"id":4359168217,"package_name":"seaborn","ecosystem":"pypi","requirements":"\u003e=0.9.0","direct":true,"kind":"runtime","optional":false},{"id":4359168218,"package_name":"snakemake","ecosystem":"pypi","requirements":"\u003e=5.7.1","direct":true,"kind":"runtime","optional":false},{"id":4359168219,"package_name":"sparkhpc","ecosystem":"pypi","requirements":"\u003e=0.3.post4","direct":true,"kind":"runtime","optional":false}]}],"score":7.491087593534876,"created_at":"2025-09-09T01:24:33.100Z","updated_at":"2025-10-07T08:39:44.937Z","avatar_url":"https://github.com/cbg-ethz.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":26,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/169929","html_url":"https://science.ecosyste.ms/projects/169929"}