{"id":1745,"name":"COVID-19 Lung Segmentation","description":"COVID-19 Lung Segmentation - Published in JOSS (2021)","url":"https://github.com/riccardobiondi/segmentation","last_synced_at":"2025-09-04T16:33:39.405Z","repository":{"id":46694534,"uuid":"275171928","full_name":"RiccardoBiondi/segmentation","owner":"RiccardoBiondi","description":"COVID-19 Lung Segmentation","archived":false,"fork":false,"pushed_at":"2023-10-20T08:58:09.000Z","size":62014,"stargazers_count":20,"open_issues_count":0,"forks_count":7,"subscribers_count":4,"default_branch":"master","last_synced_at":"2025-08-28T00:07:59.177Z","etag":null,"topics":["covid-19","ct-images","lung-regions","segmentation"],"latest_commit_sha":null,"homepage":"https://covid-19-ggo-segmentation.readthedocs.io/en/latest/?badge=latest","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/RiccardoBiondi.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":".github/CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.md","dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-06-26T14:13:14.000Z","updated_at":"2025-07-23T08:56:54.000Z","dependencies_parsed_at":"2022-07-30T22:38:02.759Z","dependency_job_id":"a697201e-1451-4350-bead-8b522dbd8d41","html_url":"https://github.com/RiccardoBiondi/segmentation","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/RiccardoBiondi/segmentation","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RiccardoBiondi%2Fsegmentation","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RiccardoBiondi%2Fsegmentation/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RiccardoBiondi%2Fsegmentation/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RiccardoBiondi%2Fsegmentation/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RiccardoBiondi","download_url":"https://codeload.github.com/RiccardoBiondi/segmentation/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/RiccardoBiondi%2Fsegmentation/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273528283,"owners_count":25121773,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"RiccardoBiondi","name":null,"uuid":"48323959","kind":"user","description":"PhD student at the University of Bologna. I am currently focusing on medical image segmentation","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/48323959?u=28386e2db5b11474711806ef1372b5f04c5c7118\u0026v=4","repositories_count":20,"last_synced_at":"2024-04-18T02:11:29.383Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/RiccardoBiondi","funding_links":[],"total_stars":29,"followers":9,"following":0,"created_at":"2023-02-22T20:43:12.703Z","updated_at":"2024-04-18T02:11:33.532Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RiccardoBiondi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/RiccardoBiondi/repositories"},"packages":[],"commits":{"id":2179740,"full_name":"riccardobiondi/segmentation","default_branch":"master","committers":[{"name":"RiccardoBiondi","email":"riccardo.biondi4@studio.unibo.it","login":"RiccardoBiondi","count":187},{"name":"Diedre Carmo","email":"carmodiedre@outlook.com","login":"dscarmo","count":1},{"name":"Daniel S. Katz","email":"d.katz@ieee.org","login":"danielskatz","count":1}],"total_commits":189,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":63.0,"dds":0.010582010582010581,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T06:36:00.799Z","last_synced_commit":"cd6f3accec485c13e7bf4fd1aeb7e9208970f44b","created_at":"2024-10-03T15:38:42.852Z","updated_at":"2025-08-07T06:36:00.810Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/riccardobiondi%2Fsegmentation/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-21T00:00:20.603Z","repositories_count":5479765,"commits_count":853308117,"contributors_count":31095153,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"riccardobiondi/segmentation","html_url":"https://github.com/riccardobiondi/segmentation","last_synced_at":"2025-08-31T19:02:32.958Z","status":"error","issues_count":5,"pull_requests_count":3,"avg_time_to_close_issue":5669483.4,"avg_time_to_close_pull_request":552460.0,"issues_closed_count":5,"pull_requests_closed_count":3,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":2.8,"avg_comments_per_pull_request":0.3333333333333333,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-10-03T15:38:44.809Z","updated_at":"2025-08-31T19:02:32.959Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/riccardobiondi%2Fsegmentation","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/riccardobiondi%2Fsegmentation/issues","issue_labels_count":{"question":2,"help wanted":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":3,"CONTRIBUTOR":2},"pull_request_author_associations_count":{"CONTRIBUTOR":2,"NONE":1},"issue_authors":{"accidentul":3,"dscarmo":2},"pull_request_authors":{"codacy-badger":1,"dscarmo":1,"danielskatz":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9960864,"issues_count":29599243,"pull_requests_count":86024997,"authors_count":9558114,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":2},"last_year":{"WatchEvent":2}},"keywords":["covid-19","ct-images","lung-regions","segmentation"],"dependencies":[{"ecosystem":"pypi","filepath":"docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-30T22:38:02.221Z","updated_at":"2022-07-30T22:38:02.221Z","repository_link":"https://github.com/RiccardoBiondi/segmentation/blob/master/docs/requirements.txt","dependencies":[{"id":527336210,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.17","direct":true,"kind":"runtime","optional":false},{"id":527336211,"package_name":"opencv-python","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336212,"package_name":"tdqm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336213,"package_name":"SimpleITK","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336214,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336215,"package_name":"sphinx","ecosystem":"pypi","requirements":"==4.1.2","direct":true,"kind":"runtime","optional":false},{"id":527336216,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336217,"package_name":"sphinxcontrib-napoleon","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336218,"package_name":"sphinxcontrib-programoutput","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527336219,"package_name":"nbsphinx","ecosystem":"pypi","requirements":"==0.8.7","direct":true,"kind":"runtime","optional":false},{"id":527336220,"package_name":"IPython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2022-07-30T22:38:02.687Z","updated_at":"2022-07-30T22:38:02.687Z","repository_link":"https://github.com/RiccardoBiondi/segmentation/blob/master/requirements.txt","dependencies":[{"id":527338786,"package_name":"numpy","ecosystem":"pypi","requirements":"\u003e=1.17","direct":true,"kind":"runtime","optional":false},{"id":527338787,"package_name":"opencv-python","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527338788,"package_name":"tdqm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":527338789,"package_name":"SimpleITK","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":4.0943445622221,"created_at":"2025-09-04T09:17:52.008Z","updated_at":"2025-10-07T08:04:34.538Z","avatar_url":"https://github.com/RiccardoBiondi.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1186/s41747-020-00173-2","https://doi.org/10.1007/s10278-017-0037-8","https://doi.org/10.5281/zenodo.3757476"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/1745","html_url":"https://science.ecosyste.ms/projects/1745"}