{"id":17655,"name":"chip-atlas","description":"ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser","url":"https://github.com/inutano/chip-atlas","last_synced_at":"2025-09-04T23:37:52.872Z","repository":{"id":30936069,"uuid":"34494070","full_name":"inutano/chip-atlas","owner":"inutano","description":"ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser","archived":false,"fork":false,"pushed_at":"2025-07-15T09:21:10.000Z","size":26134,"stargazers_count":74,"open_issues_count":5,"forks_count":8,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-07-15T16:59:06.307Z","etag":null,"topics":["bioinformatics","data-analysis","database"],"latest_commit_sha":null,"homepage":"http://chip-atlas.org","language":"CSS","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/inutano.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-04-24T02:43:15.000Z","updated_at":"2025-07-13T03:04:39.000Z","dependencies_parsed_at":"2023-10-20T20:24:25.190Z","dependency_job_id":"ac40dd6e-6f9a-4737-86be-b85a125cb2f4","html_url":"https://github.com/inutano/chip-atlas","commit_stats":{"total_commits":761,"total_committers":6,"mean_commits":"126.83333333333333","dds":0.07752956636005259,"last_synced_commit":"7fba332842ef92534503259c7e7626266800baa9"},"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/inutano/chip-atlas","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inutano","download_url":"https://codeload.github.com/inutano/chip-atlas/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273689718,"owners_count":25150628,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"inutano","name":"Tazro Inutano Ohta","uuid":"221804","kind":"user","description":"#WeAreHackersWeDance","email":"","website":"https://orcid.org/0000-0003-3777-5945","location":"Tokyo","twitter":"inutano","company":"@DBCLS","icon_url":"https://avatars.githubusercontent.com/u/221804?u=fdea448681c5e6c91fa82c576345b2547022bd3d\u0026v=4","repositories_count":58,"last_synced_at":"2023-03-22T14:47:15.608Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/inutano","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-03T09:37:45.485Z","updated_at":"2023-03-22T14:47:15.851Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inutano","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/inutano/repositories"},"packages":[],"commits":{"id":1436074,"full_name":"inutano/chip-atlas","default_branch":"master","committers":[{"name":"Tazro Inutano Ohta","email":"inutano@gmail.com","login":null,"count":702},{"name":"Shinya Oki","email":"okishinyasp@gmail.com","login":null,"count":43},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":8},{"name":"sh-ikeda","email":"sikeda@dbcls.rois.ac.jp","login":null,"count":6},{"name":"Hirokazu Chiba","email":"hchiba1@gmail.com","login":null,"count":1},{"name":"Ubuntu","email":"ubuntu@ip-10-1-1-229.ap-northeast-1.compute.internal","login":null,"count":1}],"total_commits":761,"total_committers":6,"total_bot_commits":8,"total_bot_committers":1,"mean_commits":126.83333333333333,"dds":0.07752956636005259,"past_year_committers":[{"name":"Tazro Inutano Ohta","email":"inutano@gmail.com","login":null,"count":81},{"name":"Shinya Oki","email":"okishinyasp@gmail.com","login":null,"count":9}],"past_year_total_commits":90,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":45.0,"past_year_dds":0.09999999999999998,"last_synced_at":"2023-10-26T10:05:36.720Z","last_synced_commit":"7fba332842ef92534503259c7e7626266800baa9","created_at":"2023-10-26T10:05:28.350Z","updated_at":"2023-10-26T10:05:36.721Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"inutano/chip-atlas","html_url":"https://github.com/inutano/chip-atlas","last_synced_at":"2025-08-31T17:06:06.235Z","status":null,"issues_count":3,"pull_requests_count":8,"avg_time_to_close_issue":12622371.333333334,"avg_time_to_close_pull_request":2565677.6666666665,"issues_closed_count":3,"pull_requests_closed_count":3,"pull_request_authors_count":2,"issue_authors_count":3,"avg_comments_per_issue":4.666666666666667,"avg_comments_per_pull_request":0.25,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":7,"past_year_issues_count":2,"past_year_pull_requests_count":8,"past_year_avg_time_to_close_issue":3393093.0,"past_year_avg_time_to_close_pull_request":2565677.6666666665,"past_year_issues_closed_count":2,"past_year_pull_requests_closed_count":3,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":2,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":0.25,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":7,"past_year_merged_pull_requests_count":1,"created_at":"2025-08-30T16:05:14.244Z","updated_at":"2025-09-03T04:51:07.758Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/inutano%2Fchip-atlas/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":13,"ruby":5},"issue_author_associations_count":{"NONE":11,"OWNER":3},"pull_request_author_associations_count":{"OWNER":14,"CONTRIBUTOR":13,"COLLABORATOR":5,"NONE":1},"issue_authors":{"inutano":3,"tan5251":1,"sgourisankar":1,"ZeyuL01":1,"DanweiWang1227":1,"ftmir":1,"ZhengYi999":1,"Ying-Lab":1,"zx8754":1,"yiqisu":1,"mdippel-benaroya":1,"MariaCartolano":1},"pull_request_authors":{"inutano":14,"dependabot[bot]":13,"zouzhaonan":5,"slizarazo21":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10082405,"issues_count":31230170,"pull_requests_count":96100294,"authors_count":10694153,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":9,"ruby":5},"past_year_issue_author_associations_count":{"NONE":5,"OWNER":2},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":9,"COLLABORATOR":5,"OWNER":4,"NONE":1},"past_year_issue_authors":{"inutano":2,"DanweiWang1227":1,"MariaCartolano":1,"mdippel-benaroya":1,"sgourisankar":1,"tan5251":1},"past_year_pull_request_authors":{"dependabot[bot]":9,"zouzhaonan":5,"inutano":4,"slizarazo21":1},"maintainers":[{"login":"inutano","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/inutano"},{"login":"zouzhaonan","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zouzhaonan"}],"active_maintainers":[{"login":"inutano","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/inutano"},{"login":"zouzhaonan","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/zouzhaonan"}]},"events":{"total":{"IssuesEvent":13,"WatchEvent":7,"DeleteEvent":14,"IssueCommentEvent":26,"PushEvent":59,"PullRequestReviewEvent":3,"PullRequestEvent":31,"GollumEvent":4,"ForkEvent":1,"CreateEvent":17},"last_year":{"IssuesEvent":13,"WatchEvent":7,"DeleteEvent":14,"IssueCommentEvent":26,"PushEvent":59,"PullRequestReviewEvent":3,"PullRequestEvent":31,"GollumEvent":4,"ForkEvent":1,"CreateEvent":17}},"keywords":["bioinformatics","data-analysis","database"],"dependencies":[{"ecosystem":"rubygems","filepath":"Gemfile","sha":null,"kind":"manifest","created_at":"2022-07-15T22:01:10.337Z","updated_at":"2022-07-15T22:01:10.337Z","repository_link":"https://github.com/inutano/chip-atlas/blob/master/Gemfile","dependencies":[{"id":226583447,"package_name":"rake","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583448,"package_name":"sinatra","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583449,"package_name":"activerecord","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583450,"package_name":"sinatra-activerecord","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583451,"package_name":"rack-protection","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583452,"package_name":"sqlite3","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583453,"package_name":"haml","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583454,"package_name":"sass","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583455,"package_name":"redcarpet","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583456,"package_name":"nokogiri","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583457,"package_name":"unicorn","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583458,"package_name":"rubyzip","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":226583459,"package_name":"shotgun","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"development","optional":false}]},{"ecosystem":"rubygems","filepath":"Gemfile.lock","sha":null,"kind":"lockfile","created_at":"2022-07-15T22:01:10.345Z","updated_at":"2022-07-15T22:01:10.345Z","repository_link":"https://github.com/inutano/chip-atlas/blob/master/Gemfile.lock","dependencies":[{"id":226583463,"package_name":"activemodel","ecosystem":"rubygems","requirements":"6.1.6.1","direct":false,"kind":"runtime","optional":false},{"id":226583464,"package_name":"activerecord","ecosystem":"rubygems","requirements":"6.1.6.1","direct":false,"kind":"runtime","optional":false},{"id":226583465,"package_name":"activesupport","ecosystem":"rubygems","requirements":"6.1.6.1","direct":false,"kind":"runtime","optional":false},{"id":226583466,"package_name":"concurrent-ruby","ecosystem":"rubygems","requirements":"1.1.10","direct":false,"kind":"runtime","optional":false},{"id":226583467,"package_name":"ffi","ecosystem":"rubygems","requirements":"1.15.5","direct":false,"kind":"runtime","optional":false},{"id":226583468,"package_name":"haml","ecosystem":"rubygems","requirements":"5.2.2","direct":false,"kind":"runtime","optional":false},{"id":226583469,"package_name":"i18n","ecosystem":"rubygems","requirements":"1.11.0","direct":false,"kind":"runtime","optional":false},{"id":226583470,"package_name":"kgio","ecosystem":"rubygems","requirements":"2.11.4","direct":false,"kind":"runtime","optional":false},{"id":226583471,"package_name":"mini_portile2","ecosystem":"rubygems","requirements":"2.8.0","direct":false,"kind":"runtime","optional":false},{"id":226583472,"package_name":"minitest","ecosystem":"rubygems","requirements":"5.16.2","direct":false,"kind":"runtime","optional":false},{"id":226583473,"package_name":"mustermann","ecosystem":"rubygems","requirements":"1.1.1","direct":false,"kind":"runtime","optional":false},{"id":226583474,"package_name":"nokogiri","ecosystem":"rubygems","requirements":"1.13.6","direct":false,"kind":"runtime","optional":false},{"id":226583475,"package_name":"racc","ecosystem":"rubygems","requirements":"1.6.0","direct":false,"kind":"runtime","optional":false},{"id":226583476,"package_name":"rack","ecosystem":"rubygems","requirements":"2.2.3.1","direct":false,"kind":"runtime","optional":false},{"id":226583477,"package_name":"rack-protection","ecosystem":"rubygems","requirements":"2.2.0","direct":false,"kind":"runtime","optional":false},{"id":226583478,"package_name":"raindrops","ecosystem":"rubygems","requirements":"0.20.0","direct":false,"kind":"runtime","optional":false},{"id":226583479,"package_name":"rake","ecosystem":"rubygems","requirements":"13.0.6","direct":false,"kind":"runtime","optional":false},{"id":226583480,"package_name":"rb-fsevent","ecosystem":"rubygems","requirements":"0.11.1","direct":false,"kind":"runtime","optional":false},{"id":226583481,"package_name":"rb-inotify","ecosystem":"rubygems","requirements":"0.10.1","direct":false,"kind":"runtime","optional":false},{"id":226583482,"package_name":"redcarpet","ecosystem":"rubygems","requirements":"3.5.1","direct":false,"kind":"runtime","optional":false},{"id":226583483,"package_name":"ruby2_keywords","ecosystem":"rubygems","requirements":"0.0.5","direct":false,"kind":"runtime","optional":false},{"id":226583484,"package_name":"rubyzip","ecosystem":"rubygems","requirements":"2.3.2","direct":false,"kind":"runtime","optional":false},{"id":226583485,"package_name":"sass","ecosystem":"rubygems","requirements":"3.7.4","direct":false,"kind":"runtime","optional":false},{"id":226583486,"package_name":"sass-listen","ecosystem":"rubygems","requirements":"4.0.0","direct":false,"kind":"runtime","optional":false},{"id":226583487,"package_name":"shotgun","ecosystem":"rubygems","requirements":"0.9.2","direct":false,"kind":"runtime","optional":false},{"id":226583488,"package_name":"sinatra","ecosystem":"rubygems","requirements":"2.2.0","direct":false,"kind":"runtime","optional":false},{"id":226583489,"package_name":"sinatra-activerecord","ecosystem":"rubygems","requirements":"2.0.25","direct":false,"kind":"runtime","optional":false},{"id":226583490,"package_name":"sqlite3","ecosystem":"rubygems","requirements":"1.4.4","direct":false,"kind":"runtime","optional":false},{"id":226583491,"package_name":"temple","ecosystem":"rubygems","requirements":"0.8.2","direct":false,"kind":"runtime","optional":false},{"id":226583492,"package_name":"tilt","ecosystem":"rubygems","requirements":"2.0.10","direct":false,"kind":"runtime","optional":false},{"id":226583493,"package_name":"tzinfo","ecosystem":"rubygems","requirements":"2.0.4","direct":false,"kind":"runtime","optional":false},{"id":226583494,"package_name":"unicorn","ecosystem":"rubygems","requirements":"6.1.0","direct":false,"kind":"runtime","optional":false},{"id":226583495,"package_name":"zeitwerk","ecosystem":"rubygems","requirements":"2.6.0","direct":false,"kind":"runtime","optional":false}]},{"ecosystem":"docker","filepath":"Dockerfile","sha":null,"kind":"manifest","created_at":"2023-01-14T18:00:46.318Z","updated_at":"2023-01-14T18:00:46.318Z","repository_link":"https://github.com/inutano/chip-atlas/blob/master/Dockerfile","dependencies":[{"id":6903045295,"package_name":"ruby","ecosystem":"docker","requirements":"2.6.5-slim","direct":true,"kind":"build","optional":false}]},{"ecosystem":"docker","filepath":"docker-compose.dev.yml","sha":null,"kind":"manifest","created_at":"2023-10-20T20:24:22.345Z","updated_at":"2023-10-20T20:24:22.345Z","repository_link":"https://github.com/inutano/chip-atlas/blob/master/docker-compose.dev.yml","dependencies":[{"id":14267945640,"package_name":"ruby","ecosystem":"docker","requirements":"2.6.5-slim","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"docker","filepath":"docker-compose.yml","sha":null,"kind":"manifest","created_at":"2023-10-20T20:24:23.163Z","updated_at":"2023-10-20T20:24:23.163Z","repository_link":"https://github.com/inutano/chip-atlas/blob/master/docker-compose.yml","dependencies":[]}],"score":6.161207321695077,"created_at":"2025-09-04T15:50:48.778Z","updated_at":"2025-10-07T08:09:07.546Z","avatar_url":"https://github.com/inutano.png","language":"CSS","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.11044059","http://dx.doi.org/10.18908/lsdba.nbdc01558-000","https://doi.org/10.1093/nar/gkac199","http://dx.doi.org/10.15252/embr.201846255","https://doi.org/10.1093/nar/gkae358","http://dx.doi.org/10.1093/nar/gkac199"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["mesh","sequences","interactive","hacking"],"project_url":"https://science.ecosyste.ms/api/v1/projects/17655","html_url":"https://science.ecosyste.ms/projects/17655","bibtex_url":"https://science.ecosyste.ms/projects/17655/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/17655/export.apalike"}