{"id":17734,"name":"trenchripper","description":"Small library for analysis of mother machine data. Built to run on a SLURM cluster, but can be run locally.","url":"https://github.com/paulssonlab/trenchripper","last_synced_at":"2025-09-04T23:39:04.552Z","repository":{"id":257136971,"uuid":"802337259","full_name":"paulssonlab/TrenchRipper","owner":"paulssonlab","description":"Small library for analysis of mother machine data. Built to run on a SLURM cluster, but can be run locally.","archived":false,"fork":false,"pushed_at":"2025-09-04T12:05:42.000Z","size":18417,"stargazers_count":3,"open_issues_count":0,"forks_count":1,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-09-04T14:19:32.961Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/paulssonlab.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null,"notice":null,"maintainers":null,"copyright":null,"agents":null,"dco":null,"cla":null}},"created_at":"2024-05-18T02:59:27.000Z","updated_at":"2025-09-04T12:05:46.000Z","dependencies_parsed_at":"2024-09-15T01:57:16.726Z","dependency_job_id":"fbe05d56-05c4-4599-9bab-cef58f7c6b32","html_url":"https://github.com/paulssonlab/TrenchRipper","commit_stats":null,"previous_names":["paulssonlab/trenchripper"],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/paulssonlab/TrenchRipper","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/paulssonlab","download_url":"https://codeload.github.com/paulssonlab/TrenchRipper/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273689770,"owners_count":25150628,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"paulssonlab","name":"Paulsson Lab at HMS","uuid":"39430475","kind":"organization","description":"","email":null,"website":"http://paulsson.med.harvard.edu","location":"Boston, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/39430475?v=4","repositories_count":1,"last_synced_at":"2024-05-18T02:37:16.666Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/paulssonlab","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-05-18T02:37:16.747Z","updated_at":"2024-05-18T02:37:16.747Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/paulssonlab","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/paulssonlab/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"paulssonlab/TrenchRipper","html_url":"https://github.com/paulssonlab/TrenchRipper","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-31T03:14:58.601Z","updated_at":"2025-08-31T03:14:58.601Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/paulssonlab%2FTrenchRipper/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"NONE":1},"issue_authors":{},"pull_request_authors":{"gutiloluis":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.939Z","repositories_count":10082405,"issues_count":31230170,"pull_requests_count":96100294,"authors_count":10694153,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"gutiloluis":1},"maintainers":[],"active_maintainers":[]},"events":{"total":{"ReleaseEvent":2,"WatchEvent":1,"PushEvent":14,"PullRequestEvent":2,"ForkEvent":1,"CreateEvent":3},"last_year":{"ReleaseEvent":2,"WatchEvent":1,"PushEvent":14,"PullRequestEvent":2,"ForkEvent":1,"CreateEvent":3}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2024-09-15T01:57:15.740Z","updated_at":"2024-09-15T01:57:15.740Z","repository_link":"https://github.com/paulssonlab/TrenchRipper/blob/master/environment.yml","dependencies":[{"id":20146770031,"package_name":"pulp","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770032,"package_name":"parse","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2024-09-15T01:57:15.755Z","updated_at":"2024-09-15T01:57:15.755Z","repository_link":"https://github.com/paulssonlab/TrenchRipper/blob/master/setup.py","dependencies":[{"id":20146770033,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770034,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770035,"package_name":"bokeh","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770036,"package_name":"h5py","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770037,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770038,"package_name":"ipympl","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770044,"package_name":"datashader","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770049,"package_name":"scikit-image","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770050,"package_name":"jupyter-client","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770051,"package_name":"jupyter-core","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770052,"package_name":"jupyterlab","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770053,"package_name":"jupyterlab-server","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770054,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":20146770055,"package_name":"dask","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:50:48.863Z","updated_at":"2025-10-07T08:09:08.994Z","avatar_url":"https://github.com/paulssonlab.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/17734","html_url":"https://science.ecosyste.ms/projects/17734","bibtex_url":"https://science.ecosyste.ms/projects/17734/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/17734/export.apalike"}