{"id":17887,"name":"genome_tracks","description":"A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.","url":"https://github.com/epigen/genome_tracks","last_synced_at":"2025-09-04T23:40:59.471Z","repository":{"id":65275868,"uuid":"438573546","full_name":"epigen/genome_tracks","owner":"epigen","description":"A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.","archived":false,"fork":false,"pushed_at":"2025-08-05T11:13:48.000Z","size":101,"stargazers_count":25,"open_issues_count":2,"forks_count":1,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-05T13:12:45.777Z","etag":null,"topics":["atac-seq","bioinformatics","biomedical-data-science","genome-browser","genome-track","genomic-regions","pipeline","python","rna-seq","scrna-seq","snakemake","visualization","workflow"],"latest_commit_sha":null,"homepage":"https://epigen.github.io/genome_tracks/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/epigen.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-12-15T09:40:20.000Z","updated_at":"2025-08-05T11:13:51.000Z","dependencies_parsed_at":"2024-09-14T03:06:59.785Z","dependency_job_id":"a6235efa-35f1-4c4e-9f72-12b9fe599acb","html_url":"https://github.com/epigen/genome_tracks","commit_stats":null,"previous_names":[],"tags_count":9,"template":false,"template_full_name":null,"purl":"pkg:github/epigen/genome_tracks","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epigen","download_url":"https://codeload.github.com/epigen/genome_tracks/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273689928,"owners_count":25150630,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"epigen","name":"Computational Epigenetics","uuid":"3911278","kind":"organization","description":"Computational Epigenetics Research and Software","email":null,"website":"http://www.medical-epigenomics.org/","location":"Vienna, Austria","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/3911278?v=4","repositories_count":17,"last_synced_at":"2023-03-05T15:22:40.323Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/epigen","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T18:24:54.804Z","updated_at":"2023-03-05T15:22:40.358Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epigen","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/epigen/repositories"},"packages":[],"commits":{"id":9738951,"full_name":"epigen/genome_tracks","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2025-04-15T11:41:34.698Z","updated_at":"2025-04-15T11:41:34.698Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-04T00:00:25.936Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"epigen/genome_tracks","html_url":"https://github.com/epigen/genome_tracks","last_synced_at":"2025-04-15T11:41:37.194Z","status":null,"issues_count":13,"pull_requests_count":0,"avg_time_to_close_issue":6641944.5,"avg_time_to_close_pull_request":null,"issues_closed_count":12,"pull_requests_closed_count":0,"pull_request_authors_count":0,"issue_authors_count":1,"avg_comments_per_issue":0.3076923076923077,"avg_comments_per_pull_request":null,"merged_pull_requests_count":0,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":15136058.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-15T11:41:34.782Z","updated_at":"2025-09-02T06:50:43.556Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/epigen%2Fgenome_tracks/issues","issue_labels_count":{"enhancement":5,"documentation":2,"bug":2},"pull_request_labels_count":{},"issue_author_associations_count":{"COLLABORATOR":10},"pull_request_author_associations_count":{},"issue_authors":{"sreichl":10},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10061379,"issues_count":31059648,"pull_requests_count":94180017,"authors_count":10686068,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{"bug":1},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":3},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"sreichl":3},"past_year_pull_request_authors":{},"maintainers":[{"login":"sreichl","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sreichl"}],"active_maintainers":[{"login":"sreichl","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/sreichl"}]},"events":{"total":{"CreateEvent":2,"IssuesEvent":3,"ReleaseEvent":1,"WatchEvent":9,"IssueCommentEvent":5,"PushEvent":5,"ForkEvent":1},"last_year":{"CreateEvent":2,"IssuesEvent":3,"ReleaseEvent":1,"WatchEvent":9,"IssueCommentEvent":5,"PushEvent":5,"ForkEvent":1}},"keywords":["atac-seq","bioinformatics","biomedical-data-science","genome-browser","genome-track","genomic-regions","pipeline","python","rna-seq","scrna-seq","snakemake","visualization","workflow"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:50:49.083Z","updated_at":"2025-10-07T08:09:11.864Z","avatar_url":"https://github.com/epigen.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1093/nar/gkw257","https://doi.org/10.1093/bioinformatics/btaa692","https://doi.org/10.1093/bioinformatics/btp352","https://doi.org/10.1016/j.cels.2025.101346"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/17887","html_url":"https://science.ecosyste.ms/projects/17887","bibtex_url":"https://science.ecosyste.ms/projects/17887/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/17887/export.apalike"}