{"id":199641,"name":null,"description":"An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format","url":"https://github.com/cumbof/opengdc","last_synced_at":"2025-09-10T05:25:34.123Z","repository":{"id":68348085,"uuid":"83318763","full_name":"cumbof/OpenGDC","owner":"cumbof","description":"An open-source Java tool to automatically extract and convert all clinical and genomic data from the Genomic Data Commons to BED, GTF, CSV, and JSON format","archived":true,"fork":false,"pushed_at":"2021-03-03T16:29:03.000Z","size":248219,"stargazers_count":0,"open_issues_count":0,"forks_count":1,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-07-20T20:49:06.102Z","etag":null,"topics":["bed","bioinformatics","csv","gdc","gtf","json","target","tcga"],"latest_commit_sha":null,"homepage":"http://geco.deib.polimi.it/opengdc/","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cumbof.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"license.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-02-27T14:25:14.000Z","updated_at":"2024-05-31T14:28:11.000Z","dependencies_parsed_at":"2023-06-25T23:04:03.413Z","dependency_job_id":null,"html_url":"https://github.com/cumbof/OpenGDC","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/cumbof/OpenGDC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FOpenGDC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FOpenGDC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FOpenGDC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FOpenGDC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cumbof","download_url":"https://codeload.github.com/cumbof/OpenGDC/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2FOpenGDC/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274417114,"owners_count":25281103,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-10T02:00:12.551Z","response_time":83,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cumbof","name":"Fabio Cumbo","uuid":"3764656","kind":"user","description":"Ph.D. in Computer Science and Automation Engineering, Postdoctoral Research Fellow @BlankenbergLab, GMI, LRI, Cleveland Clinic, USA","email":"","website":"https://cumbof.github.io/","location":"Cleveland, OH, USA","twitter":"cumbofabio","company":"Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic","icon_url":"https://avatars.githubusercontent.com/u/3764656?u=bcb95fb75b4e4da35a1313fe617b8f9f1c4b1322\u0026v=4","repositories_count":14,"last_synced_at":"2023-02-28T22:50:18.221Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cumbof","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-11T23:32:52.990Z","updated_at":"2023-02-28T22:50:18.230Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cumbof","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cumbof/repositories"},"packages":[],"commits":{"id":6928579,"full_name":"cumbof/opengdc","default_branch":"master","committers":null,"total_commits":null,"total_committers":null,"total_bot_commits":null,"total_bot_committers":null,"mean_commits":null,"dds":null,"past_year_committers":null,"past_year_total_commits":null,"past_year_total_committers":null,"past_year_total_bot_commits":null,"past_year_total_bot_committers":null,"past_year_mean_commits":null,"past_year_dds":null,"last_synced_at":null,"last_synced_commit":null,"created_at":"2024-11-27T23:09:18.221Z","updated_at":"2024-11-27T23:09:18.221Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2Fopengdc/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-10T00:25:43.995Z","repositories_count":5545114,"commits_count":878229909,"contributors_count":32458717,"owners_count":919815,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cumbof/opengdc","html_url":"https://github.com/cumbof/opengdc","last_synced_at":"2024-11-27T23:10:08.377Z","status":null,"issues_count":10,"pull_requests_count":131,"avg_time_to_close_issue":14061297.0,"avg_time_to_close_pull_request":101460.85496183205,"issues_closed_count":10,"pull_requests_closed_count":131,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":0.4,"avg_comments_per_pull_request":0.19083969465648856,"merged_pull_requests_count":121,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-27T23:09:35.122Z","updated_at":"2024-11-27T23:10:08.377Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2Fopengdc","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cumbof%2Fopengdc/issues","issue_labels_count":{"enhancement":2,"bug":1},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":4,"COLLABORATOR":1},"pull_request_author_associations_count":{"COLLABORATOR":64,"OWNER":8},"issue_authors":{"cumbof":4,"eleonoracappelli":1},"pull_request_authors":{"eleonoracappelli":64,"cumbof":8},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-09T00:00:11.778Z","repositories_count":10179900,"issues_count":31976559,"pull_requests_count":100454573,"authors_count":10736670,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"eleonoracappelli","count":65,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/eleonoracappelli"},{"login":"cumbof","count":12,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/cumbof"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bed","bioinformatics","csv","gdc","gtf","json","target","tcga"],"dependencies":[],"score":null,"created_at":"2025-09-09T03:39:53.661Z","updated_at":"2025-10-07T08:43:24.709Z","avatar_url":"https://github.com/cumbof.png","language":"Java","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.3390/app10186367"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/199641","html_url":"https://science.ecosyste.ms/projects/199641"}