{"id":20044,"name":"biobb_wf_dna_helparms","description":"This tutorial aims to illustrate the process of extracting structural and dynamical properties from a DNA MD trajectory helical parameters, step by step, using the BioExcel Building Blocks library (biobb).","url":"https://github.com/bioexcel/biobb_wf_dna_helparms","last_synced_at":"2025-09-05T00:29:42.494Z","repository":{"id":39582295,"uuid":"409488413","full_name":"bioexcel/biobb_wf_dna_helparms","owner":"bioexcel","description":"This tutorial aims to illustrate the process of extracting structural and dynamical properties from a DNA MD trajectory helical parameters, step by step, using the BioExcel Building Blocks library (biobb).","archived":false,"fork":false,"pushed_at":"2025-08-01T08:42:03.000Z","size":49133,"stargazers_count":1,"open_issues_count":0,"forks_count":1,"subscribers_count":6,"default_branch":"main","last_synced_at":"2025-08-01T10:50:13.333Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://mmb.irbbarcelona.org/biobb/","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bioexcel.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-09-23T07:17:10.000Z","updated_at":"2025-08-01T08:42:08.000Z","dependencies_parsed_at":"2025-03-12T10:32:57.450Z","dependency_job_id":null,"html_url":"https://github.com/bioexcel/biobb_wf_dna_helparms","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/bioexcel/biobb_wf_dna_helparms","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioexcel","download_url":"https://codeload.github.com/bioexcel/biobb_wf_dna_helparms/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273694651,"owners_count":25151476,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bioexcel","name":"BioExcel","uuid":"15978232","kind":"organization","description":"Center of Excellence for Computational Biomolecular Research","email":null,"website":"https://bioexcel.eu/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/15978232?v=4","repositories_count":50,"last_synced_at":"2023-03-05T15:33:33.659Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bioexcel","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-15T18:34:37.974Z","updated_at":"2023-03-05T15:33:33.690Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioexcel","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bioexcel/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"bioexcel/biobb_wf_dna_helparms","html_url":"https://github.com/bioexcel/biobb_wf_dna_helparms","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T00:29:03.125Z","updated_at":"2025-09-05T00:29:03.125Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bioexcel%2Fbiobb_wf_dna_helparms/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10082319,"issues_count":31220811,"pull_requests_count":96069974,"authors_count":10694166,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"PushEvent":5},"last_year":{"PushEvent":5}},"keywords":[],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/inactive_issues.yml","sha":null,"kind":"manifest","created_at":"2023-09-28T17:44:36.365Z","updated_at":"2023-09-28T17:44:36.365Z","repository_link":"https://github.com/bioexcel/biobb_wf_dna_helparms/blob/main/.github/workflows/inactive_issues.yml","dependencies":[{"id":14000346699,"package_name":"actions/stale","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"biobb_wf_dna_helparms/docs/requirements.txt","sha":null,"kind":"manifest","created_at":"2024-02-28T11:38:30.252Z","updated_at":"2024-02-28T11:38:30.252Z","repository_link":"https://github.com/bioexcel/biobb_wf_dna_helparms/blob/main/biobb_wf_dna_helparms/docs/requirements.txt","dependencies":[{"id":16497453931,"package_name":"sphinx_rtd_theme","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":16497453932,"package_name":"recommonmark","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/citation.yaml","sha":null,"kind":"manifest","created_at":"2024-05-31T14:42:55.077Z","updated_at":"2024-05-31T14:42:55.077Z","repository_link":"https://github.com/bioexcel/biobb_wf_dna_helparms/blob/main/.github/workflows/citation.yaml","dependencies":[{"id":18336034533,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"conda","filepath":"conda_env/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-12T10:32:55.556Z","updated_at":"2025-03-12T10:32:55.556Z","repository_link":"https://github.com/bioexcel/biobb_wf_dna_helparms/blob/main/conda_env/environment.yml","dependencies":[{"id":22233964218,"package_name":"biobb_dna","ecosystem":"conda","requirements":"4.2.2","direct":true,"kind":"runtime","optional":false},{"id":22233964219,"package_name":"jupyter","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":22233964220,"package_name":"matplotlib","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"binder/environment.yml","sha":null,"kind":"manifest","created_at":"2025-03-12T10:32:55.638Z","updated_at":"2025-03-12T10:32:55.638Z","repository_link":"https://github.com/bioexcel/biobb_wf_dna_helparms/blob/main/binder/environment.yml","dependencies":[]}],"score":null,"created_at":"2025-09-04T15:50:51.428Z","updated_at":"2025-10-07T08:09:54.219Z","avatar_url":"https://github.com/bioexcel.png","language":"HTML","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/20044","html_url":"https://science.ecosyste.ms/projects/20044","bibtex_url":"https://science.ecosyste.ms/projects/20044/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/20044/export.apalike"}