{"id":201544,"name":null,"description":"CX serialization and de-serialization in Cytoscape","url":"https://github.com/cytoscape/cx","last_synced_at":"2025-09-10T05:45:43.344Z","repository":{"id":33313410,"uuid":"36958152","full_name":"cytoscape/cx","owner":"cytoscape","description":"CX serialization and de-serialization in Cytoscape","archived":false,"fork":false,"pushed_at":"2025-07-23T20:44:36.000Z","size":46068,"stargazers_count":3,"open_issues_count":9,"forks_count":1,"subscribers_count":10,"default_branch":"master","last_synced_at":"2025-08-12T05:26:47.444Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"http://cmzmasek.github.io/cx-impl/index.html","language":"Java","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":null,"status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytoscape.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":null,"code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2015-06-05T22:18:09.000Z","updated_at":"2025-01-21T18:39:10.000Z","dependencies_parsed_at":"2023-10-14T21:32:33.727Z","dependency_job_id":"91d74e55-5d83-49da-baa1-6ccccac583fa","html_url":"https://github.com/cytoscape/cx","commit_stats":null,"previous_names":[],"tags_count":17,"template":false,"template_full_name":null,"purl":"pkg:github/cytoscape/cx","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytoscape","download_url":"https://codeload.github.com/cytoscape/cx/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274418246,"owners_count":25281278,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-10T02:00:12.551Z","response_time":83,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cytoscape","name":"Cytoscape Consortium","uuid":"956141","kind":"organization","description":"","email":null,"website":"http://www.cytoscape.org/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/956141?v=4","repositories_count":153,"last_synced_at":"2024-04-08T15:20:38.390Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytoscape","funding_links":[],"total_stars":13229,"followers":139,"following":0,"created_at":"2022-11-02T16:25:02.211Z","updated_at":"2024-04-08T15:20:55.066Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytoscape","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytoscape/repositories"},"packages":[],"commits":{"id":10752368,"full_name":"cytoscape/cx","default_branch":"master","committers":[{"name":"cmzmasek","email":"cmzmasek@yahoo.com","login":null,"count":148},{"name":"jingjingbic","email":"jingjingbic@gmail.com","login":"jingjingbic","count":79},{"name":"D","email":"dotasek.dev@gmail.com","login":"dotasek","count":54},{"name":"Brett Settle","email":"brettjsettle@gmail.com","login":"BrettJSettle","count":37},{"name":"Keiichiro Ono","email":"keiono@gmail.com","login":"keiono","count":34},{"name":"jingchen","email":"jingchen@100.82.85.115","login":null,"count":4},{"name":"GAOChengzhan","email":"1812535185@qq.com","login":"GAOChengzhan","count":3},{"name":"jingchen","email":"jingchen@jings-mbp.san.rr.com","login":null,"count":3},{"name":"Scooter Morris","email":"scooter@cgl.ucsf.edu","login":"scootermorris","count":1},{"name":"Mike Kucera","email":"mikekucera@gmail.com","login":"mikekucera","count":1},{"name":"Christian Lopes","email":"chrtannus@gmail.com","login":"chrtannus","count":1},{"name":"jingchen","email":"jingchen@localhost","login":null,"count":1}],"total_commits":366,"total_committers":12,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":30.5,"dds":0.5956284153005464,"past_year_committers":[{"name":"jingjingbic","email":"jingjingbic@gmail.com","login":"jingjingbic","count":3},{"name":"GAOChengzhan","email":"1812535185@qq.com","login":"GAOChengzhan","count":3}],"past_year_total_commits":6,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":3.0,"past_year_dds":0.5,"last_synced_at":"2025-08-12T05:20:50.662Z","last_synced_commit":"c6abd54dc413cb3fde142abf665fdb2a00eb2c49","created_at":"2025-08-12T05:17:34.023Z","updated_at":"2025-08-12T05:21:41.708Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-10T00:25:43.995Z","repositories_count":5546454,"commits_count":878156807,"contributors_count":32467252,"owners_count":919946,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cytoscape/cx","html_url":"https://github.com/cytoscape/cx","last_synced_at":"2025-08-13T01:38:20.716Z","status":"error","issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-08-12T05:17:34.245Z","updated_at":"2025-09-02T08:09:14.086Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytoscape%2Fcx/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":3},"issue_author_associations_count":{},"pull_request_author_associations_count":{"NONE":4,"CONTRIBUTOR":1,"COLLABORATOR":1},"issue_authors":{},"pull_request_authors":{"dependabot[bot]":3,"GAOChengzhan":2,"jingjingbic":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-10T00:00:25.260Z","repositories_count":10198612,"issues_count":32083694,"pull_requests_count":101560712,"authors_count":10742792,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"NONE":1,"CONTRIBUTOR":1,"COLLABORATOR":1},"past_year_issue_authors":{},"past_year_pull_request_authors":{"GAOChengzhan":2,"jingjingbic":1},"maintainers":[{"login":"jingjingbic","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jingjingbic"}],"active_maintainers":[{"login":"jingjingbic","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jingjingbic"}]},"events":{"total":{"WatchEvent":1,"PushEvent":10},"last_year":{"WatchEvent":1,"PushEvent":10}},"keywords":[],"dependencies":[{"ecosystem":"maven","filepath":"pom.xml","sha":null,"kind":"manifest","created_at":"2022-07-30T13:08:10.478Z","updated_at":"2022-07-30T13:08:10.478Z","repository_link":"https://github.com/cytoscape/cx/blob/master/pom.xml","dependencies":[{"id":523298059,"package_name":"org.ops4j.pax.logging:pax-logging-api","ecosystem":"maven","requirements":"1.11.12","direct":true,"kind":"provided","optional":false},{"id":523298060,"package_name":"org.osgi:org.osgi.core","ecosystem":"maven","requirements":"6.0.0","direct":true,"kind":"provided","optional":false},{"id":523298061,"package_name":"org.cytoscape:application-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298062,"package_name":"org.cytoscape:viewmodel-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298063,"package_name":"org.cytoscape:group-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298064,"package_name":"org.cytoscape:service-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298065,"package_name":"org.cytoscape:vizmap-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298066,"package_name":"org.cytoscape:work-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298067,"package_name":"org.cytoscape:work-swing-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298068,"package_name":"org.cytoscape:io-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298069,"package_name":"org.cytoscape:layout-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"provided","optional":false},{"id":523298070,"package_name":"com.fasterxml.jackson.core:jackson-databind","ecosystem":"maven","requirements":"2.8.11.3","direct":true,"kind":"runtime","optional":false},{"id":523298071,"package_name":"org.ndexbio.client:ndex-java-client","ecosystem":"maven","requirements":"2.4.3","direct":true,"kind":"runtime","optional":false},{"id":523298072,"package_name":"junit:junit","ecosystem":"maven","requirements":"4.12","direct":true,"kind":"test","optional":false},{"id":523298073,"package_name":"org.mockito:mockito-all","ecosystem":"maven","requirements":"1.10.19","direct":true,"kind":"test","optional":false},{"id":523298074,"package_name":"org.cytoscape:model-impl","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298075,"package_name":"org.cytoscape:event-api","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298076,"package_name":"org.cytoscape:viewmodel-impl","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298077,"package_name":"org.cytoscape:group-impl","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298078,"package_name":"org.cytoscape:vizmap-impl","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298079,"package_name":"org.cytoscape:ding-presentation-impl","ecosystem":"maven","requirements":"3.8.0","direct":true,"kind":"test","optional":false},{"id":523298080,"package_name":"de.danielbechler:java-object-diff","ecosystem":"maven","requirements":"0.95","direct":true,"kind":"test","optional":false},{"id":523298081,"package_name":"com.google.code.gson:gson","ecosystem":"maven","requirements":"2.8.5","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"rubygems","filepath":"docs/Gemfile","sha":null,"kind":"manifest","created_at":"2023-10-14T21:32:31.743Z","updated_at":"2023-10-14T21:32:31.743Z","repository_link":"https://github.com/cytoscape/cx/blob/master/docs/Gemfile","dependencies":[{"id":14206004648,"package_name":"minima","ecosystem":"rubygems","requirements":"~\u003e 2.5","direct":true,"kind":"runtime","optional":false},{"id":14206004649,"package_name":"github-pages","ecosystem":"rubygems","requirements":"~\u003e 227","direct":true,"kind":"development","optional":false},{"id":14206004650,"package_name":"jekyll-feed","ecosystem":"rubygems","requirements":"~\u003e 0.12","direct":true,"kind":"development","optional":false},{"id":14206004651,"package_name":"tzinfo","ecosystem":"rubygems","requirements":"\u003e= 1, \u003c 3","direct":true,"kind":"runtime","optional":false},{"id":14206004652,"package_name":"tzinfo-data","ecosystem":"rubygems","requirements":"\u003e= 0","direct":true,"kind":"runtime","optional":false},{"id":14206004653,"package_name":"wdm","ecosystem":"rubygems","requirements":"~\u003e 0.1.1","direct":true,"kind":"runtime","optional":false},{"id":14206004654,"package_name":"http_parser.rb","ecosystem":"rubygems","requirements":"~\u003e 0.6.0","direct":true,"kind":"runtime","optional":false},{"id":14206004655,"package_name":"webrick","ecosystem":"rubygems","requirements":"~\u003e 1.7","direct":true,"kind":"runtime","optional":false}]}],"score":4.969813299576001,"created_at":"2025-09-09T03:52:59.081Z","updated_at":"2025-10-07T08:43:42.117Z","avatar_url":"https://github.com/cytoscape.png","language":"Java","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["cytoscape","network-analysis","network-biology","systems-biology","cytoscapejs","graph-theory","visualisation","identifier-mapping"],"project_url":"https://science.ecosyste.ms/api/v1/projects/201544","html_url":"https://science.ecosyste.ms/projects/201544"}