{"id":202588,"name":null,"description":"rtrees: an R package to assemble phylogenetic trees from mega-trees","url":"https://github.com/daijiang/rtrees","last_synced_at":"2025-09-11T08:00:17.290Z","repository":{"id":48432901,"uuid":"181394580","full_name":"daijiang/rtrees","owner":"daijiang","description":"rtrees: an R package to assemble phylogenetic trees from mega-trees","archived":false,"fork":false,"pushed_at":"2025-08-08T22:40:27.000Z","size":52896,"stargazers_count":36,"open_issues_count":1,"forks_count":11,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-09T00:23:36.155Z","etag":null,"topics":["phylogenetic-trees","r","r-package","rstats"],"latest_commit_sha":null,"homepage":"https://daijiang.github.io/rtrees/","language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/daijiang.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE.md","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-04-15T01:56:34.000Z","updated_at":"2025-08-08T22:33:47.000Z","dependencies_parsed_at":"2023-02-08T20:46:36.294Z","dependency_job_id":"0b50a660-2606-4238-80f3-64a33c6d3a72","html_url":"https://github.com/daijiang/rtrees","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/daijiang/rtrees","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daijiang","download_url":"https://codeload.github.com/daijiang/rtrees/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274599416,"owners_count":25314695,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-11T02:00:13.660Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"daijiang","name":"Daijiang Li","uuid":"1696911","kind":"user","description":"","email":"","website":"https://www.dlilab.com","location":"Baton Rouge, LA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/1696911?u=d2e979de0766593c2b4ea1360610ef73aefd8882\u0026v=4","repositories_count":81,"last_synced_at":"2023-08-07T15:06:17.844Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/daijiang","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T19:49:53.140Z","updated_at":"2023-08-07T15:06:18.375Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daijiang","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/daijiang/repositories"},"packages":[],"commits":{"id":1429996,"full_name":"daijiang/rtrees","default_branch":"master","committers":[{"name":"daijiang","email":"daijianglee@gmail.com","login":"daijiang","count":78},{"name":"Daijiang Li","email":"dli1@ufl.edu","login":null,"count":54}],"total_commits":132,"total_committers":2,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":66.0,"dds":0.40909090909090906,"past_year_committers":[{"name":"daijiang","email":"daijianglee@gmail.com","login":"daijiang","count":1}],"past_year_total_commits":1,"past_year_total_committers":1,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":1.0,"past_year_dds":0.0,"last_synced_at":"2025-07-22T00:33:37.299Z","last_synced_commit":"d24736c81203ba2b999dd851ce2cd9234e4906eb","created_at":"2023-10-26T06:43:51.845Z","updated_at":"2025-07-22T00:33:37.300Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-11T02:23:18.710Z","repositories_count":5576069,"commits_count":889549374,"contributors_count":33118335,"owners_count":922592,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"daijiang/rtrees","html_url":"https://github.com/daijiang/rtrees","last_synced_at":"2025-07-22T00:31:58.166Z","status":"error","issues_count":5,"pull_requests_count":3,"avg_time_to_close_issue":6422641.25,"avg_time_to_close_pull_request":14.666666666666666,"issues_closed_count":4,"pull_requests_closed_count":3,"pull_request_authors_count":1,"issue_authors_count":5,"avg_comments_per_issue":2.0,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":101198.0,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":1,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":2.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2024-11-17T21:44:21.852Z","updated_at":"2025-08-30T19:25:00.821Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/daijiang%2Frtrees/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":6},"pull_request_author_associations_count":{"OWNER":3},"issue_authors":{"lauosgom":1,"bichengdong":1,"jkleinkopf":1,"wxy23116":1,"leafminers":1,"Rimagination":1},"pull_request_authors":{"daijiang":3},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-11T00:00:09.407Z","repositories_count":10235011,"issues_count":32583100,"pull_requests_count":103219565,"authors_count":10756197,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"NONE":2},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"bichengdong":1,"jkleinkopf":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"daijiang","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/daijiang"}],"active_maintainers":[]},"events":{"total":{"IssuesEvent":3,"WatchEvent":4,"IssueCommentEvent":6,"PushEvent":5},"last_year":{"IssuesEvent":3,"WatchEvent":4,"IssueCommentEvent":6,"PushEvent":5}},"keywords":["phylogenetic-trees","r","r-package","rstats"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-22T06:51:33.634Z","updated_at":"2022-09-22T06:51:33.634Z","repository_link":"https://github.com/daijiang/rtrees/blob/master/DESCRIPTION","dependencies":[{"id":5831448435,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.5.0","direct":true,"kind":"depends","optional":false},{"id":5831448436,"package_name":"ape","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448437,"package_name":"tidytree","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448438,"package_name":"dplyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448439,"package_name":"tibble","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448440,"package_name":"utils","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448441,"package_name":"castor","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448442,"package_name":"furrr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448443,"package_name":"future","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448444,"package_name":"megatrees","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448445,"package_name":"fastmatch","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448446,"package_name":"data.table","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":5831448447,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/pkgdown.yaml","sha":null,"kind":"manifest","created_at":"2023-02-08T20:46:36.279Z","updated_at":"2023-02-08T20:46:36.279Z","repository_link":"https://github.com/daijiang/rtrees/blob/master/.github/workflows/pkgdown.yaml","dependencies":[{"id":7467704624,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v3","direct":true,"kind":"composite","optional":false},{"id":7467704625,"package_name":"r-lib/actions/setup-pandoc","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7467704626,"package_name":"r-lib/actions/setup-r","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7467704627,"package_name":"r-lib/actions/setup-r-dependencies","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":7467704628,"package_name":"JamesIves/github-pages-deploy-action","ecosystem":"actions","requirements":"v4.4.1","direct":true,"kind":"composite","optional":false}]}],"score":4.304065093204169,"created_at":"2025-09-09T04:10:53.758Z","updated_at":"2025-10-07T08:43:48.205Z","avatar_url":"https://github.com/daijiang.png","language":"R","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/202588","html_url":"https://science.ecosyste.ms/projects/202588"}