{"id":2052,"name":"SODAR Core","description":"SODAR Core: a Django-based framework for scientific data management and analysis web apps - Published in JOSS (2020)","url":"https://github.com/bihealth/sodar-core-legacy","last_synced_at":"2025-09-04T16:39:41.065Z","repository":{"id":52722353,"uuid":"165220058","full_name":"bihealth/sodar-core-legacy","owner":"bihealth","description":"LEGACY repository for SODAR Core, preserved for saving review-related issues. See \"sodar-core\" for the up-to-date repository.","archived":true,"fork":false,"pushed_at":"2022-06-01T12:43:14.000Z","size":5673,"stargazers_count":15,"open_issues_count":0,"forks_count":4,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-08-28T00:58:02.211Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/bihealth.png","metadata":{"files":{"readme":"README.rst","changelog":"CHANGELOG.rst","contributing":"CONTRIBUTING.rst","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.rst","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":"AUTHORS.rst","dei":null,"publiccode":null,"codemeta":"codemeta.json","zenodo":null}},"created_at":"2019-01-11T09:50:04.000Z","updated_at":"2023-01-27T23:50:43.000Z","dependencies_parsed_at":"2022-08-22T10:01:10.465Z","dependency_job_id":null,"html_url":"https://github.com/bihealth/sodar-core-legacy","commit_stats":null,"previous_names":[],"tags_count":33,"template":false,"template_full_name":null,"purl":"pkg:github/bihealth/sodar-core-legacy","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth","download_url":"https://codeload.github.com/bihealth/sodar-core-legacy/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273529548,"owners_count":25121828,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"bihealth","name":"Berlin Institute of Health","uuid":"11364301","kind":"organization","description":"BIH Core Unit Bioinformatics \u0026 BIH HPC IT","email":null,"website":"https://www.cubi.bihealth.org/","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/11364301?v=4","repositories_count":215,"last_synced_at":"2024-04-16T02:59:21.051Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/bihealth","funding_links":[],"total_stars":325,"followers":33,"following":0,"created_at":"2022-11-06T07:31:40.804Z","updated_at":"2024-04-16T03:00:18.012Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/bihealth/repositories"},"packages":[],"commits":{"id":9625399,"full_name":"bihealth/sodar-core-legacy","default_branch":"main","committers":[{"name":"mikko.nieminen","email":"mikko.nieminen@bihealth.de","login":"mikkonie","count":849},{"name":"Oliver Stolpe","email":"oliver.stolpe@bihealth.de","login":"stolpeo","count":22},{"name":"Manuel Holtgrewe","email":"manuel.holtgrewe@bihealth.de","login":"holtgrewe","count":22},{"name":"Tim Garrels","email":"tim.garrels@mdc-berlin.de","login":"timgarrels","count":18},{"name":"Hendrik Bomhardt","email":"hendrik.bomhardt@mdc-berlin.de","login":"Oribow","count":9},{"name":"Franziska Schumann","email":"franziska.schumann@bihealth.de","login":null,"count":3},{"name":"Olga Botvinnik","email":"olga.botvinnik@gmail.com","login":"olgabot","count":2},{"name":"Raunak Agarwal","email":"ragarwal@cubi5.bihealth.org","login":null,"count":1}],"total_commits":926,"total_committers":8,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":115.75,"dds":0.08315334773218142,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T07:01:08.870Z","last_synced_commit":"22f0df27d4e05efaf5f2dc7ea03baa6fd856cfb6","created_at":"2025-04-11T11:24:43.595Z","updated_at":"2025-08-07T07:01:08.882Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-28T00:00:20.468Z","repositories_count":5479765,"commits_count":853309695,"contributors_count":31095220,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"bihealth/sodar-core-legacy","html_url":"https://github.com/bihealth/sodar-core-legacy","last_synced_at":"2025-08-31T19:38:55.383Z","status":"error","issues_count":7,"pull_requests_count":10,"avg_time_to_close_issue":14650898.0,"avg_time_to_close_pull_request":1033250.8,"issues_closed_count":7,"pull_requests_closed_count":10,"pull_request_authors_count":3,"issue_authors_count":2,"avg_comments_per_issue":4.285714285714286,"avg_comments_per_pull_request":0.6,"merged_pull_requests_count":7,"bot_issues_count":0,"bot_pull_requests_count":2,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-11T11:24:43.961Z","updated_at":"2025-08-31T19:38:55.383Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/bihealth%2Fsodar-core-legacy/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":2},"issue_author_associations_count":{"CONTRIBUTOR":5,"NONE":2},"pull_request_author_associations_count":{"MEMBER":6,"NONE":2,"CONTRIBUTOR":2},"issue_authors":{"olgabot":5,"rbatorsky":2},"pull_request_authors":{"holtgrewe":6,"olgabot":2,"dependabot[bot]":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9910739,"issues_count":29196719,"pull_requests_count":83823820,"authors_count":8971776,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"holtgrewe","count":6,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/holtgrewe"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements/base.txt","sha":null,"kind":"manifest","created_at":"2022-08-22T10:01:09.655Z","updated_at":"2022-08-22T10:01:09.655Z","repository_link":"https://github.com/bihealth/sodar-core-legacy/blob/main/requirements/base.txt","dependencies":[{"id":2264430058,"package_name":"wheel","ecosystem":"pypi","requirements":"==0.37.1","direct":true,"kind":"runtime","optional":false},{"id":2264430059,"package_name":"setuptools","ecosystem":"pypi","requirements":"==59.6.0","direct":true,"kind":"runtime","optional":false},{"id":2264430060,"package_name":"django","ecosystem":"pypi","requirements":"\u003e=3.2.13,\u003c3.3","direct":true,"kind":"runtime","optional":false},{"id":2264430061,"package_name":"django-environ","ecosystem":"pypi","requirements":"\u003e=0.8.1,\u003c0.9","direct":true,"kind":"runtime","optional":false},{"id":2264430062,"package_name":"django-crispy-forms","ecosystem":"pypi","requirements":"\u003e=1.13.0,\u003c1.14","direct":true,"kind":"runtime","optional":false},{"id":2264430063,"package_name":"django-model-utils","ecosystem":"pypi","requirements":"\u003e=4.2.0,\u003c4.3","direct":true,"kind":"runtime","optional":false},{"id":2264430064,"package_name":"argon2-cffi","ecosystem":"pypi","requirements":"\u003e=21.3.0,\u003c21.4","direct":true,"kind":"runtime","optional":false},{"id":2264430065,"package_name":"psycopg2-binary","ecosystem":"pypi","requirements":"\u003e=2.9.3,\u003c2.10","direct":true,"kind":"runtime","optional":false},{"id":2264430066,"package_name":"awesome-slugify","ecosystem":"pypi","requirements":"\u003e=1.6.5,\u003c1.7","direct":true,"kind":"runtime","optional":false},{"id":2264430067,"package_name":"pytz","ecosystem":"pypi","requirements":"\u003e=2021.3","direct":true,"kind":"runtime","optional":false},{"id":2264430068,"package_name":"django-iconify","ecosystem":"pypi","requirements":"==0.1.1","direct":true,"kind":"runtime","optional":false},{"id":2264430069,"package_name":"docutils","ecosystem":"pypi","requirements":"==0.17.1","direct":true,"kind":"runtime","optional":false},{"id":2264430070,"package_name":"Sphinx","ecosystem":"pypi","requirements":"==4.3.2","direct":true,"kind":"runtime","optional":false},{"id":2264430071,"package_name":"django-docs","ecosystem":"pypi","requirements":"==0.3.1","direct":true,"kind":"runtime","optional":false},{"id":2264430072,"package_name":"sphinx-rtd-theme","ecosystem":"pypi","requirements":"==1.0.0","direct":true,"kind":"runtime","optional":false},{"id":2264430073,"package_name":"versioneer","ecosystem":"pypi","requirements":"==0.21","direct":true,"kind":"runtime","optional":false},{"id":2264430074,"package_name":"rules","ecosystem":"pypi","requirements":"\u003e=3.0,\u003c3.1","direct":true,"kind":"runtime","optional":false},{"id":2264430075,"package_name":"djangorestframework","ecosystem":"pypi","requirements":"\u003e=3.13.1,\u003c3.14","direct":true,"kind":"runtime","optional":false},{"id":2264430076,"package_name":"django-rest-knox","ecosystem":"pypi","requirements":"\u003e=4.1.0,\u003c4.2","direct":true,"kind":"runtime","optional":false},{"id":2264430077,"package_name":"markdown","ecosystem":"pypi","requirements":"==3.3.4","direct":true,"kind":"runtime","optional":false},{"id":2264430078,"package_name":"django-markupfield","ecosystem":"pypi","requirements":"\u003e=2.0.1,\u003c2.1","direct":true,"kind":"runtime","optional":false},{"id":2264430079,"package_name":"django-pagedown","ecosystem":"pypi","requirements":"\u003e=2.2.1,\u003c2.3","direct":true,"kind":"runtime","optional":false},{"id":2264430080,"package_name":"mistune","ecosystem":"pypi","requirements":"\u003e=2.0.1,\u003c2.1","direct":true,"kind":"runtime","optional":false},{"id":2264430081,"package_name":"django-db-file-storage","ecosystem":"pypi","requirements":"==0.5.5","direct":true,"kind":"runtime","optional":false},{"id":2264430082,"package_name":"celery","ecosystem":"pypi","requirements":"\u003e=5.2.3,\u003c5.3","direct":true,"kind":"runtime","optional":false},{"id":2264430083,"package_name":"django-autocomplete-light","ecosystem":"pypi","requirements":"\u003e=3.8.2,\u003c3.9","direct":true,"kind":"runtime","optional":false},{"id":2264430084,"package_name":"django-saml2-auth-ai","ecosystem":"pypi","requirements":"\u003e=2.1.6,\u003c2.2","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements/ldap.txt","sha":null,"kind":"manifest","created_at":"2022-08-22T10:01:09.966Z","updated_at":"2022-08-22T10:01:09.966Z","repository_link":"https://github.com/bihealth/sodar-core-legacy/blob/main/requirements/ldap.txt","dependencies":[{"id":2264430177,"package_name":"django-auth-ldap","ecosystem":"pypi","requirements":"==4.0.0","direct":true,"kind":"runtime","optional":false},{"id":2264430178,"package_name":"python-ldap","ecosystem":"pypi","requirements":"==3.4.0","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements/local.txt","sha":null,"kind":"manifest","created_at":"2022-08-22T10:01:10.075Z","updated_at":"2022-08-22T10:01:10.075Z","repository_link":"https://github.com/bihealth/sodar-core-legacy/blob/main/requirements/local.txt","dependencies":[{"id":2264431673,"package_name":"django-extensions","ecosystem":"pypi","requirements":"==3.1.5","direct":true,"kind":"runtime","optional":false},{"id":2264431674,"package_name":"Werkzeug","ecosystem":"pypi","requirements":"==2.0.2","direct":true,"kind":"runtime","optional":false},{"id":2264431675,"package_name":"django-debug-toolbar","ecosystem":"pypi","requirements":"\u003e=3.2.4,\u003c3.3","direct":true,"kind":"runtime","optional":false},{"id":2264431676,"package_name":"ipdb","ecosystem":"pypi","requirements":"\u003e=0.13.9,\u003c0.14","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"requirements/test.txt","sha":null,"kind":"manifest","created_at":"2022-08-22T10:01:10.249Z","updated_at":"2022-08-22T10:01:10.249Z","repository_link":"https://github.com/bihealth/sodar-core-legacy/blob/main/requirements/test.txt","dependencies":[{"id":2264431820,"package_name":"flake8","ecosystem":"pypi","requirements":"==4.0.1","direct":true,"kind":"test","optional":false},{"id":2264431821,"package_name":"django-test-plus","ecosystem":"pypi","requirements":"==2.2.0","direct":true,"kind":"test","optional":false},{"id":2264431822,"package_name":"factory-boy","ecosystem":"pypi","requirements":"==3.2.1","direct":true,"kind":"test","optional":false},{"id":2264431823,"package_name":"coverage","ecosystem":"pypi","requirements":"==6.2","direct":true,"kind":"test","optional":false},{"id":2264431824,"package_name":"django-coverage-plugin","ecosystem":"pypi","requirements":"==2.0.2","direct":true,"kind":"test","optional":false},{"id":2264431825,"package_name":"pytest-django","ecosystem":"pypi","requirements":"==4.5.2","direct":true,"kind":"test","optional":false},{"id":2264431826,"package_name":"pytest-sugar","ecosystem":"pypi","requirements":"==0.9.4","direct":true,"kind":"test","optional":false},{"id":2264431827,"package_name":"selenium","ecosystem":"pypi","requirements":"==4.1.0","direct":true,"kind":"test","optional":false},{"id":2264431828,"package_name":"tblib","ecosystem":"pypi","requirements":"==1.7.0","direct":true,"kind":"test","optional":false},{"id":2264431829,"package_name":"beautifulsoup4","ecosystem":"pypi","requirements":"==4.10.0","direct":true,"kind":"test","optional":false},{"id":2264431830,"package_name":"codacy-coverage","ecosystem":"pypi","requirements":"==1.3.11","direct":true,"kind":"test","optional":false},{"id":2264431831,"package_name":"black","ecosystem":"pypi","requirements":"==22.3.0","direct":true,"kind":"test","optional":false}]}],"score":4.787491742782046,"created_at":"2025-09-04T09:17:56.076Z","updated_at":"2025-11-04T15:50:36.260Z","avatar_url":"https://github.com/bihealth.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.4269346","https://doi.org/10.1093/nar/gkaa241","https://doi.org/10.1093/bioinformatics/btz850"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/2052","html_url":"https://science.ecosyste.ms/projects/2052"}