{"id":205427,"name":null,"description":"PhysiGym is a tool for applying reinforcement learning to PhysiCell","url":"https://github.com/dante-berth/physigym","last_synced_at":"2025-09-11T08:37:44.952Z","repository":{"id":305133190,"uuid":"787349576","full_name":"Dante-Berth/PhysiGym","owner":"Dante-Berth","description":"PhysiGym is a tool for applying reinforcement learning to PhysiCell","archived":false,"fork":false,"pushed_at":"2025-08-21T00:41:23.000Z","size":152597,"stargazers_count":5,"open_issues_count":0,"forks_count":1,"subscribers_count":7,"default_branch":"main","last_synced_at":"2025-08-21T02:34:40.382Z","etag":null,"topics":["agent-based-modeling","deep-reinforcement-learning","dynamic-treatment-regimens","physicell","reinforcement-learning","tumor-microenvironment"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/Dante-Berth.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-04-16T11:03:59.000Z","updated_at":"2025-08-21T00:41:27.000Z","dependencies_parsed_at":"2025-08-12T12:35:02.126Z","dependency_job_id":null,"html_url":"https://github.com/Dante-Berth/PhysiGym","commit_stats":null,"previous_names":["dante-berth/physigym"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/Dante-Berth/PhysiGym","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Dante-Berth","download_url":"https://codeload.github.com/Dante-Berth/PhysiGym/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":274602335,"owners_count":25315199,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-11T02:00:13.660Z","response_time":74,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"Dante-Berth","name":null,"uuid":"132011707","kind":"user","description":null,"email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/132011707?u=aa6fb503df6ff3a078db3a44ad5c44546107575b\u0026v=4","repositories_count":1,"last_synced_at":"2023-05-05T20:45:37.860Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/Dante-Berth","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-05-05T20:45:37.869Z","updated_at":"2023-05-05T20:45:37.869Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Dante-Berth","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/Dante-Berth/repositories"},"packages":null,"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"Dante-Berth/PhysiGym","html_url":"https://github.com/Dante-Berth/PhysiGym","last_synced_at":"2025-09-08T03:43:26.467Z","status":null,"issues_count":0,"pull_requests_count":4,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":7.333333333333333,"issues_closed_count":0,"pull_requests_closed_count":3,"pull_request_authors_count":1,"issue_authors_count":0,"avg_comments_per_issue":null,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":4,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":7.333333333333333,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":3,"past_year_pull_request_authors_count":1,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2025-08-29T14:37:53.529Z","updated_at":"2025-09-08T03:43:26.469Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/Dante-Berth%2FPhysiGym/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{"COLLABORATOR":4},"issue_authors":{},"pull_request_authors":{"elmbeech":4},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-11T00:00:09.407Z","repositories_count":10235011,"issues_count":32583100,"pull_requests_count":103219565,"authors_count":10756197,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"COLLABORATOR":4},"past_year_issue_authors":{},"past_year_pull_request_authors":{"elmbeech":4},"maintainers":[{"login":"elmbeech","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/elmbeech"}],"active_maintainers":[{"login":"elmbeech","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/elmbeech"}]},"events":{"total":{"WatchEvent":3,"PushEvent":26,"PullRequestEvent":8,"ForkEvent":1,"CreateEvent":2},"last_year":{"WatchEvent":3,"PushEvent":26,"PullRequestEvent":8,"ForkEvent":1,"CreateEvent":2}},"keywords":["agent-based-modeling","deep-reinforcement-learning","dynamic-treatment-regimens","physicell","reinforcement-learning","tumor-microenvironment"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/apple.yml","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:26.021Z","updated_at":"2025-07-18T14:37:26.021Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/.github/workflows/apple.yml","dependencies":[{"id":24196456924,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":24196456925,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/linux.yml","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:26.859Z","updated_at":"2025-07-18T14:37:26.859Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/.github/workflows/linux.yml","dependencies":[{"id":24196456974,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":24196456975,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"model/tibbue/custom_modules/physigym/requirements.txt","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:27.290Z","updated_at":"2025-07-18T14:37:27.290Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/model/tibbue/custom_modules/physigym/requirements.txt","dependencies":[{"id":24196457014,"package_name":"gymnasium","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457017,"package_name":"imageio","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457018,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457020,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457021,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457023,"package_name":"scikit-image","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457024,"package_name":"tensordict","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457025,"package_name":"torch","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457026,"package_name":"wandb","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"model/tumor_immune_base/custom_modules/physigym/requirements.txt","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:27.529Z","updated_at":"2025-07-18T14:37:27.529Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/model/tumor_immune_base/custom_modules/physigym/requirements.txt","dependencies":[{"id":24196457028,"package_name":"gymnasium","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457029,"package_name":"imageio","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457030,"package_name":"numba","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457031,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457032,"package_name":"tensordict","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457033,"package_name":"tyro","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457034,"package_name":"wandb","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"physigym/custom_modules/extending/pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:27.891Z","updated_at":"2025-07-18T14:37:27.891Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/physigym/custom_modules/extending/pyproject.toml","dependencies":[]},{"ecosystem":"pypi","filepath":"physigym/custom_modules/extending/setup.py","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:27.955Z","updated_at":"2025-07-18T14:37:27.955Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/physigym/custom_modules/extending/setup.py","dependencies":[]},{"ecosystem":"pypi","filepath":"physigym/custom_modules/physigym/pyproject.toml","sha":null,"kind":"manifest","created_at":"2025-07-18T14:37:28.018Z","updated_at":"2025-07-18T14:37:28.018Z","repository_link":"https://github.com/Dante-Berth/PhysiGym/blob/main/physigym/custom_modules/physigym/pyproject.toml","dependencies":[{"id":24196457097,"package_name":"gymnasium","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457098,"package_name":"ipython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457099,"package_name":"lxml","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457100,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457101,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457102,"package_name":"pandas","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":24196457103,"package_name":"pyqt6","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-09T04:19:31.842Z","updated_at":"2025-10-07T08:44:04.654Z","avatar_url":"https://github.com/Dante-Berth.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/205427","html_url":"https://science.ecosyste.ms/projects/205427"}