{"id":20782,"name":"cosmicqc","description":"Single cell Morphology Quality Control (coSMicQC)","url":"https://github.com/cytomining/cosmicqc","last_synced_at":"2025-09-05T00:43:26.983Z","repository":{"id":239961644,"uuid":"798974874","full_name":"cytomining/coSMicQC","owner":"cytomining","description":"Single cell Morphology Quality Control (coSMicQC)","archived":false,"fork":false,"pushed_at":"2025-08-26T18:14:03.000Z","size":236467,"stargazers_count":8,"open_issues_count":19,"forks_count":3,"subscribers_count":2,"default_branch":"main","last_synced_at":"2025-08-26T22:24:19.209Z","etag":null,"topics":["image-based-profiling","microscopy-image-analysis","quality-control"],"latest_commit_sha":null,"homepage":"https://cytomining.github.io/coSMicQC/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/cytomining.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2024-05-10T21:38:12.000Z","updated_at":"2025-08-21T15:54:22.000Z","dependencies_parsed_at":"2024-06-29T20:47:09.112Z","dependency_job_id":"9ed445c2-2573-4df6-96b1-47c37db5c61d","html_url":"https://github.com/cytomining/coSMicQC","commit_stats":null,"previous_names":["wayscience/scupltqc","cytomining/cosmicqc","wayscience/cosmicqc"],"tags_count":17,"template":false,"template_full_name":null,"purl":"pkg:github/cytomining/coSMicQC","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2FcoSMicQC","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2FcoSMicQC/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2FcoSMicQC/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2FcoSMicQC/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","download_url":"https://codeload.github.com/cytomining/coSMicQC/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2FcoSMicQC/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273695220,"owners_count":25151481,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"cytomining","name":"cytomining","uuid":"19327357","kind":"organization","description":null,"email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/19327357?v=4","repositories_count":27,"last_synced_at":"2024-03-26T15:05:50.600Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/cytomining","funding_links":[],"total_stars":252,"followers":21,"following":0,"created_at":"2022-11-03T23:13:01.208Z","updated_at":"2024-03-26T15:05:50.939Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/cytomining/repositories"},"packages":[],"commits":{"id":10342348,"full_name":"cytomining/cosmicqc","default_branch":"master","committers":[{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":79},{"name":"Dave Bunten","email":"dave.bunten@cuanschutz.edu","login":"d33bs","count":56},{"name":"Jenna Tomkinson","email":"107513215+jenna-tomkinson","login":"jenna-tomkinson","count":4},{"name":"Vincent Rubinetti","email":"vince.rubinetti@gmail.com","login":"vincerubinetti","count":1}],"total_commits":140,"total_committers":4,"total_bot_commits":79,"total_bot_committers":1,"mean_commits":35.0,"dds":0.4357142857142857,"past_year_committers":[{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":79},{"name":"Dave Bunten","email":"dave.bunten@cuanschutz.edu","login":"d33bs","count":47},{"name":"Jenna Tomkinson","email":"107513215+jenna-tomkinson","login":"jenna-tomkinson","count":3},{"name":"Vincent Rubinetti","email":"vince.rubinetti@gmail.com","login":"vincerubinetti","count":1}],"past_year_total_commits":130,"past_year_total_committers":4,"past_year_total_bot_commits":79,"past_year_total_bot_committers":1,"past_year_mean_commits":32.5,"past_year_dds":0.39230769230769236,"last_synced_at":"2025-06-14T18:16:48.762Z","last_synced_commit":"77aaaa3765b923519980f4a8bf1dc1630ada8f9f","created_at":"2025-06-14T08:11:08.834Z","updated_at":"2025-06-14T18:16:48.762Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcosmicqc/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"cytomining/cosmicqc","html_url":"https://github.com/cytomining/cosmicqc","last_synced_at":"2025-09-03T01:08:35.142Z","status":null,"issues_count":5,"pull_requests_count":103,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":192663.78125,"issues_closed_count":0,"pull_requests_closed_count":96,"pull_request_authors_count":3,"issue_authors_count":3,"avg_comments_per_issue":0.0,"avg_comments_per_pull_request":0.7281553398058253,"merged_pull_requests_count":88,"bot_issues_count":0,"bot_pull_requests_count":80,"past_year_issues_count":5,"past_year_pull_requests_count":103,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":192663.78125,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":96,"past_year_pull_request_authors_count":3,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.0,"past_year_avg_comments_per_pull_request":0.7281553398058253,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":80,"past_year_merged_pull_requests_count":88,"created_at":"2025-06-14T08:11:09.107Z","updated_at":"2025-09-03T01:08:35.143Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcosmicqc","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/cytomining%2Fcosmicqc/issues","issue_labels_count":{},"pull_request_labels_count":{"dependencies":80,"python":79,"github_actions":1},"issue_author_associations_count":{"MEMBER":4},"pull_request_author_associations_count":{"CONTRIBUTOR":80,"MEMBER":23},"issue_authors":{"jenna-tomkinson":3,"MikeLippincott":1},"pull_request_authors":{"dependabot[bot]":80,"d33bs":21,"jenna-tomkinson":2},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10082304,"issues_count":31220387,"pull_requests_count":96069062,"authors_count":10694175,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{"dependencies":80,"python":79,"github_actions":1},"past_year_issue_author_associations_count":{"MEMBER":4},"past_year_pull_request_author_associations_count":{"CONTRIBUTOR":80,"MEMBER":23},"past_year_issue_authors":{"jenna-tomkinson":3,"MikeLippincott":1},"past_year_pull_request_authors":{"dependabot[bot]":80,"d33bs":21,"jenna-tomkinson":2},"maintainers":[{"login":"d33bs","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"jenna-tomkinson","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}],"active_maintainers":[{"login":"d33bs","count":21,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/d33bs"},{"login":"jenna-tomkinson","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jenna-tomkinson"},{"login":"MikeLippincott","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/MikeLippincott"}]},"events":{"total":{"IssuesEvent":6,"WatchEvent":1,"DeleteEvent":8,"IssueCommentEvent":14,"PushEvent":22,"PullRequestReviewCommentEvent":21,"PullRequestEvent":30,"PullRequestReviewEvent":34,"CreateEvent":7},"last_year":{"IssuesEvent":6,"WatchEvent":1,"DeleteEvent":8,"IssueCommentEvent":14,"PushEvent":22,"PullRequestReviewCommentEvent":21,"PullRequestEvent":30,"PullRequestReviewEvent":34,"CreateEvent":7}},"keywords":["image-based-profiling","microscopy-image-analysis","quality-control"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/run-tests.yml","sha":null,"kind":"manifest","created_at":"2024-05-17T19:43:27.214Z","updated_at":"2024-05-17T19:43:27.214Z","repository_link":"https://github.com/cytomining/coSMicQC/blob/main/.github/workflows/run-tests.yml","dependencies":[{"id":18135086599,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18135086600,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v5","direct":true,"kind":"composite","optional":false},{"id":18135086601,"package_name":"pre-commit/action","ecosystem":"actions","requirements":"v3.0.1","direct":true,"kind":"composite","optional":false},{"id":18135086602,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"pypi","filepath":"poetry.lock","sha":null,"kind":"lockfile","created_at":"2024-05-17T19:43:27.254Z","updated_at":"2024-05-17T19:43:27.254Z","repository_link":"https://github.com/cytomining/coSMicQC/blob/main/poetry.lock","dependencies":[{"id":18135086603,"package_name":"colorama","ecosystem":"pypi","requirements":"0.4.6","direct":false,"kind":"runtime","optional":false},{"id":18135086604,"package_name":"exceptiongroup","ecosystem":"pypi","requirements":"1.2.1","direct":false,"kind":"runtime","optional":false},{"id":18135086605,"package_name":"iniconfig","ecosystem":"pypi","requirements":"2.0.0","direct":false,"kind":"runtime","optional":false},{"id":18135086606,"package_name":"numpy","ecosystem":"pypi","requirements":"1.26.4","direct":false,"kind":"runtime","optional":false},{"id":18135086607,"package_name":"packaging","ecosystem":"pypi","requirements":"24.0","direct":false,"kind":"runtime","optional":false},{"id":18135086608,"package_name":"pandas","ecosystem":"pypi","requirements":"2.2.2","direct":false,"kind":"runtime","optional":false},{"id":18135086609,"package_name":"pluggy","ecosystem":"pypi","requirements":"1.5.0","direct":false,"kind":"runtime","optional":false},{"id":18135086610,"package_name":"pyarrow","ecosystem":"pypi","requirements":"16.0.0","direct":false,"kind":"runtime","optional":false},{"id":18135086611,"package_name":"pytest","ecosystem":"pypi","requirements":"8.2.0","direct":false,"kind":"runtime","optional":false},{"id":18135086612,"package_name":"python-dateutil","ecosystem":"pypi","requirements":"2.9.0.post0","direct":false,"kind":"runtime","optional":false},{"id":18135086613,"package_name":"pytz","ecosystem":"pypi","requirements":"2024.1","direct":false,"kind":"runtime","optional":false},{"id":18135086614,"package_name":"scipy","ecosystem":"pypi","requirements":"1.13.0","direct":false,"kind":"runtime","optional":false},{"id":18135086615,"package_name":"six","ecosystem":"pypi","requirements":"1.16.0","direct":false,"kind":"runtime","optional":false},{"id":18135086616,"package_name":"tomli","ecosystem":"pypi","requirements":"2.0.1","direct":false,"kind":"runtime","optional":false},{"id":18135086617,"package_name":"tzdata","ecosystem":"pypi","requirements":"2024.1","direct":false,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"pyproject.toml","sha":null,"kind":"manifest","created_at":"2024-05-17T19:43:27.282Z","updated_at":"2024-05-17T19:43:27.282Z","repository_link":"https://github.com/cytomining/coSMicQC/blob/main/pyproject.toml","dependencies":[{"id":18135086618,"package_name":"python","ecosystem":"pypi","requirements":"\u003e=3.9,\u003c3.13","direct":true,"kind":"runtime","optional":false},{"id":18135086619,"package_name":"pandas","ecosystem":"pypi","requirements":"^2.2.2","direct":true,"kind":"runtime","optional":false},{"id":18135086620,"package_name":"scipy","ecosystem":"pypi","requirements":"^1.13.0","direct":true,"kind":"runtime","optional":false},{"id":18135086621,"package_name":"pyarrow","ecosystem":"pypi","requirements":"^16.0.0","direct":true,"kind":"runtime","optional":false},{"id":18135086622,"package_name":"pytest","ecosystem":"pypi","requirements":"^8.2.0","direct":true,"kind":"develop","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/draft-release.yml","sha":null,"kind":"manifest","created_at":"2024-06-06T21:38:17.026Z","updated_at":"2024-06-06T21:38:17.026Z","repository_link":"https://github.com/cytomining/coSMicQC/blob/main/.github/workflows/draft-release.yml","dependencies":[{"id":18454218243,"package_name":"release-drafter/release-drafter","ecosystem":"actions","requirements":"v6","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/publish-pypi.yml","sha":null,"kind":"manifest","created_at":"2024-06-06T21:38:17.282Z","updated_at":"2024-06-06T21:38:17.282Z","repository_link":"https://github.com/cytomining/coSMicQC/blob/main/.github/workflows/publish-pypi.yml","dependencies":[{"id":18454218244,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18454218245,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v4","direct":true,"kind":"composite","optional":false},{"id":18454218246,"package_name":"pypa/gh-action-pypi-publish","ecosystem":"actions","requirements":"release/v1","direct":true,"kind":"composite","optional":false}]}],"score":4.68213122712422,"created_at":"2025-09-04T15:50:52.215Z","updated_at":"2025-10-07T08:10:09.226Z","avatar_url":"https://github.com/cytomining.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.14797008"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["mesh","profiles","sequences","networks","microscopy","interactive","hacking","network-simulation"],"project_url":"https://science.ecosyste.ms/api/v1/projects/20782","html_url":"https://science.ecosyste.ms/projects/20782"}