{"id":2094,"name":"Minerva","description":"Minerva: a light-weight, narrative image browser for multiplexed tissue images - Published in JOSS (2020)","url":"https://github.com/labsyspharm/minerva-story","last_synced_at":"2025-09-04T16:41:07.432Z","repository":{"id":47470131,"uuid":"228461778","full_name":"labsyspharm/minerva-story","owner":"labsyspharm","description":"Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.","archived":false,"fork":false,"pushed_at":"2024-05-08T18:52:37.000Z","size":282367,"stargazers_count":54,"open_issues_count":19,"forks_count":14,"subscribers_count":11,"default_branch":"master","last_synced_at":"2025-08-28T00:20:55.816Z","etag":null,"topics":["immunofluorescence","microscopy","minerva","ome"],"latest_commit_sha":null,"homepage":"https://minerva.im","language":"HTML","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/labsyspharm.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-12-16T19:39:35.000Z","updated_at":"2025-08-19T18:19:16.000Z","dependencies_parsed_at":"2023-01-23T00:01:19.542Z","dependency_job_id":"941229a7-e2ac-46ff-8414-0676b3ee8990","html_url":"https://github.com/labsyspharm/minerva-story","commit_stats":null,"previous_names":[],"tags_count":1,"template":false,"template_full_name":null,"purl":"pkg:github/labsyspharm/minerva-story","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm","download_url":"https://codeload.github.com/labsyspharm/minerva-story/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273507151,"owners_count":25118107,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"labsyspharm","name":"Laboratory of Systems Pharmacology @ Harvard","uuid":"47149595","kind":"organization","description":"Reinventing the fundamental science underlying the development of new medicines and their use in individual patients.","email":"hits@harvard.edu","website":"https://labsyspharm.org/","location":"Boston, MA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/47149595?v=4","repositories_count":150,"last_synced_at":"2024-12-24T13:42:49.677Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/labsyspharm","funding_links":[],"total_stars":624,"followers":67,"following":0,"created_at":"2022-11-09T17:02:55.438Z","updated_at":"2024-12-24T13:42:49.678Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/labsyspharm/repositories"},"packages":[],"commits":{"id":9625408,"full_name":"labsyspharm/minerva-story","default_branch":"master","committers":[{"name":"John Hoffer","email":"john@hoff.in","login":"thejohnhoffer","count":177},{"name":"dependabot[bot]","email":"49699333+dependabot[bot]","login":"dependabot[bot]","count":1},{"name":"Rumana (Ru) Rashid","email":"31513137+Ru-bixcube","login":"Ru-bixcube","count":1},{"name":"Juha Ruokonen","email":"58430493+Juha-Ruokonen","login":"Juha-Ruokonen","count":1},{"name":"Jeremy Muhlich","email":"jmuhlich@bitflood.org","login":"jmuhlich","count":1},{"name":"Han Xu","email":"86798131+hxu-hms","login":"hxu-hms","count":1},{"name":"Daniel S. Katz","email":"d.katz@ieee.org","login":"danielskatz","count":1}],"total_commits":183,"total_committers":7,"total_bot_commits":1,"total_bot_committers":1,"mean_commits":26.142857142857142,"dds":0.032786885245901676,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T06:44:54.347Z","last_synced_commit":"d29eaaf708bed4ee7dbefd9b96546409583b8d9b","created_at":"2025-04-11T11:25:07.232Z","updated_at":"2025-08-07T06:44:54.889Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-12T00:00:10.817Z","repositories_count":5471474,"commits_count":852567568,"contributors_count":31063899,"owners_count":906373,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"labsyspharm/minerva-story","html_url":"https://github.com/labsyspharm/minerva-story","last_synced_at":"2025-08-31T19:04:03.878Z","status":"error","issues_count":70,"pull_requests_count":4,"avg_time_to_close_issue":11088231.901960785,"avg_time_to_close_pull_request":322107.5,"issues_closed_count":51,"pull_requests_closed_count":4,"pull_request_authors_count":4,"issue_authors_count":18,"avg_comments_per_issue":0.6,"avg_comments_per_pull_request":0.0,"merged_pull_requests_count":3,"bot_issues_count":0,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2025-04-11T11:25:07.772Z","updated_at":"2025-09-01T13:43:06.761Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/labsyspharm%2Fminerva-story/issues","issue_labels_count":{"enhancement":24,"bug":13,"documentation":9,"duplicate":4},"pull_request_labels_count":{"dependencies":1},"issue_author_associations_count":{"NONE":36,"COLLABORATOR":26,"MEMBER":4,"CONTRIBUTOR":4},"pull_request_author_associations_count":{"CONTRIBUTOR":3,"NONE":2},"issue_authors":{"Ru-bixcube":17,"tuuliavallius":11,"madisonatyler":9,"DanaeA":6,"gjbaker":4,"ghost":4,"edn314":3,"sofroniewn":3,"Juha-Ruokonen":2,"jmuhlich":2,"rjp21":2,"CReihsmann":1,"ArtemSokolov":1,"zhqjQill":1,"shohpfizer":1,"YubinXie":1,"whunter":1,"janaed":1},"pull_request_authors":{"hxu-hms":2,"canopybiosciences":1,"dependabot[bot]":1,"danielskatz":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9960864,"issues_count":29599243,"pull_requests_count":86024997,"authors_count":9558114,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"Ru-bixcube","count":17,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Ru-bixcube"},{"login":"madisonatyler","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/madisonatyler"},{"login":"gjbaker","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gjbaker"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":4},"last_year":{"WatchEvent":4}},"keywords":["immunofluorescence","microscopy","minerva","ome"],"dependencies":[{"ecosystem":"pypi","filepath":"scripts/requirements.txt","sha":null,"kind":"manifest","created_at":"2022-08-27T02:30:39.819Z","updated_at":"2022-08-27T02:30:39.819Z","repository_link":"https://github.com/labsyspharm/minerva-story/blob/master/scripts/requirements.txt","dependencies":[{"id":2879768164,"package_name":"boto3","ecosystem":"pypi","requirements":"\u003e=1.12.14","direct":true,"kind":"runtime","optional":false},{"id":2879768165,"package_name":"pyaml","ecosystem":"pypi","requirements":"\u003e=19.12.0","direct":true,"kind":"runtime","optional":false},{"id":2879768166,"package_name":"markdown","ecosystem":"pypi","requirements":"\u003e=3.2.1","direct":true,"kind":"runtime","optional":false},{"id":2879768167,"package_name":"beautifulsoup4","ecosystem":"pypi","requirements":"\u003e=4.8.2","direct":true,"kind":"runtime","optional":false}]}],"score":6.236369590203704,"created_at":"2025-09-04T09:17:56.785Z","updated_at":"2025-10-07T08:04:37.317Z","avatar_url":"https://github.com/labsyspharm.png","language":"HTML","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.02579"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["pypi","pde","standardization","turing-machine","genetic-algorithm","energy-system","plasma","benchmarking","hydrology","distribution"],"project_url":"https://science.ecosyste.ms/api/v1/projects/2094","html_url":"https://science.ecosyste.ms/projects/2094"}