{"id":21712,"name":"openfold","description":null,"url":"https://github.com/axfbh/openfold","last_synced_at":"2025-09-05T01:04:55.902Z","repository":{"id":49755798,"uuid":"515453825","full_name":"axfbh/openfold","owner":"axfbh","description":null,"archived":false,"fork":false,"pushed_at":"2022-07-26T06:51:28.000Z","size":9379,"stargazers_count":1,"open_issues_count":0,"forks_count":0,"subscribers_count":1,"default_branch":"main","last_synced_at":"2025-04-13T03:05:39.426Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/axfbh.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2022-07-19T05:57:02.000Z","updated_at":"2024-06-13T07:07:24.000Z","dependencies_parsed_at":"2022-09-10T14:23:16.802Z","dependency_job_id":null,"html_url":"https://github.com/axfbh/openfold","commit_stats":null,"previous_names":[],"tags_count":2,"template":false,"template_full_name":null,"purl":"pkg:github/axfbh/openfold","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/axfbh","download_url":"https://codeload.github.com/axfbh/openfold/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273695273,"owners_count":25151485,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"axfbh","name":"jim","uuid":"40352341","kind":"user","description":"","email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/40352341?v=4","repositories_count":8,"last_synced_at":"2024-04-23T11:38:24.479Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/axfbh","funding_links":[],"total_stars":0,"followers":0,"following":0,"created_at":"2024-04-22T03:58:22.685Z","updated_at":"2024-04-23T11:38:30.490Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/axfbh","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/axfbh/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"axfbh/openfold","html_url":"https://github.com/axfbh/openfold","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T01:03:48.151Z","updated_at":"2025-09-05T01:03:48.151Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/axfbh%2Fopenfold/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10082304,"issues_count":31220387,"pull_requests_count":96069062,"authors_count":10694175,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2022-09-10T14:23:16.460Z","updated_at":"2022-09-10T14:23:16.460Z","repository_link":"https://github.com/axfbh/openfold/blob/main/environment.yml","dependencies":[{"id":4403648877,"package_name":"biopython","ecosystem":"pypi","requirements":"==1.79","direct":true,"kind":"runtime","optional":false},{"id":4403648878,"package_name":"deepspeed","ecosystem":"pypi","requirements":"==0.5.9","direct":true,"kind":"runtime","optional":false},{"id":4403648879,"package_name":"dm-tree","ecosystem":"pypi","requirements":"==0.1.6","direct":true,"kind":"runtime","optional":false},{"id":4403648880,"package_name":"ml-collections","ecosystem":"pypi","requirements":"==0.1.0","direct":true,"kind":"runtime","optional":false},{"id":4403648881,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.21.2","direct":true,"kind":"runtime","optional":false},{"id":4403648882,"package_name":"PyYAML","ecosystem":"pypi","requirements":"==5.4.1","direct":true,"kind":"runtime","optional":false},{"id":4403648883,"package_name":"requests","ecosystem":"pypi","requirements":"==2.26.0","direct":true,"kind":"runtime","optional":false},{"id":4403648884,"package_name":"scipy","ecosystem":"pypi","requirements":"==1.7.1","direct":true,"kind":"runtime","optional":false},{"id":4403648885,"package_name":"tqdm","ecosystem":"pypi","requirements":"==4.62.2","direct":true,"kind":"runtime","optional":false},{"id":4403648886,"package_name":"typing-extensions","ecosystem":"pypi","requirements":"==3.10.0.2","direct":true,"kind":"runtime","optional":false},{"id":4403648887,"package_name":"pytorch_lightning","ecosystem":"pypi","requirements":"==1.5.10","direct":true,"kind":"runtime","optional":false},{"id":4403648888,"package_name":"wandb","ecosystem":"pypi","requirements":"==0.12.21","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-10T14:23:16.543Z","updated_at":"2022-09-10T14:23:16.543Z","repository_link":"https://github.com/axfbh/openfold/blob/main/setup.py","dependencies":[{"id":4403652940,"package_name":"torch","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652941,"package_name":"deepspeed","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652942,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652943,"package_name":"ml-collections","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652944,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652945,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652946,"package_name":"pytorch_lightning","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4403652947,"package_name":"dm-tree","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:50:53.227Z","updated_at":"2025-10-07T08:10:26.355Z","avatar_url":"https://github.com/axfbh.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/21712","html_url":"https://science.ecosyste.ms/projects/21712","bibtex_url":"https://science.ecosyste.ms/projects/21712/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/21712/export.apalike"}