{"id":224851,"name":null,"description":"streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.","url":"https://github.com/doi-usgs/streammetabolizer","last_synced_at":"2025-10-14T20:00:51.597Z","repository":{"id":30845667,"uuid":"34403148","full_name":"DOI-USGS/streamMetabolizer","owner":"DOI-USGS","description":"streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.","archived":false,"fork":false,"pushed_at":"2023-07-29T17:47:32.000Z","size":25953,"stargazers_count":39,"open_issues_count":67,"forks_count":21,"subscribers_count":17,"default_branch":"main","last_synced_at":"2025-04-19T18:18:17.101Z","etag":null,"topics":["r","rstats","usgs"],"latest_commit_sha":null,"homepage":"http://usgs-r.github.io/streamMetabolizer/","language":"Stan","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"other","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DOI-USGS.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.md","code_of_conduct":"CODE_OF_CONDUCT.md","threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null}},"created_at":"2015-04-22T16:51:18.000Z","updated_at":"2025-04-09T10:41:04.000Z","dependencies_parsed_at":"2023-09-12T11:52:30.001Z","dependency_job_id":null,"html_url":"https://github.com/DOI-USGS/streamMetabolizer","commit_stats":null,"previous_names":["doi-usgs/streammetabolizer","usgs-r/streammetabolizer"],"tags_count":30,"template":false,"template_full_name":null,"purl":"pkg:github/DOI-USGS/streamMetabolizer","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DOI-USGS","download_url":"https://codeload.github.com/DOI-USGS/streamMetabolizer/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":279020667,"owners_count":26086898,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-10-14T02:00:06.444Z","response_time":60,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"DOI-USGS","name":"U.S. Geological Survey","uuid":"65027635","kind":"organization","description":"By integrating our diverse scientific expertise, we understand complex natural science phenomena and provide scientific products that lead to solutions.","email":"gs_help_git@usgs.gov","website":"https://www.usgs.gov/","location":"United States of America","twitter":"USGS","company":null,"icon_url":"https://avatars.githubusercontent.com/u/65027635?v=4","repositories_count":59,"last_synced_at":"2023-06-11T08:40:17.441Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/DOI-USGS","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-05T08:13:26.577Z","updated_at":"2023-06-11T08:40:17.459Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DOI-USGS","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DOI-USGS/repositories"},"packages":[],"commits":{"id":1352727,"full_name":"DOI-USGS/streamMetabolizer","default_branch":"main","committers":[{"name":"Alison Appling","email":"aappling@usgs.gov","login":"aappling-usgs","count":804},{"name":"Jordan S Read","email":"jread@usgs.gov","login":null,"count":17},{"name":"Alison Appling","email":"alison.appling@gmail.com","login":null,"count":9},{"name":"Luke Winslow","email":"lwinslow@usgs.gov","login":null,"count":4},{"name":"Maite Arroita","email":"maite.arroita@ehu.eus","login":null,"count":3},{"name":"Laura DeCicco","email":"ldecicco@usgs.gov","login":"ldecicco-USGS","count":2},{"name":"Jesse Ross","email":"jross@usgs.gov","login":null,"count":1},{"name":"Making GitHub Delicious.","email":"iron@waffle.io","login":"waffle-iron","count":1},{"name":"weisoon","email":"weisoon686@gmail.com","login":null,"count":1},{"name":"Julie Padilla","email":"jpadilla.usgs@gmail.com","login":"jpadilla-usgs","count":1}],"total_commits":843,"total_committers":10,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":84.3,"dds":0.0462633451957295,"past_year_committers":[{"name":"Alison Appling","email":"aappling@usgs.gov","login":"aappling-usgs","count":13},{"name":"Julie Padilla","email":"jpadilla.usgs@gmail.com","login":"jpadilla-usgs","count":1},{"name":"Jesse Ross","email":"jross@usgs.gov","login":null,"count":1}],"past_year_total_commits":15,"past_year_total_committers":3,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":5.0,"past_year_dds":0.1333333333333333,"last_synced_at":"2024-01-25T18:09:24.341Z","last_synced_commit":"fd4a7e8ab501053b40e5a1d2e3c01ab847a97697","created_at":"2023-09-12T11:15:07.744Z","updated_at":"2024-01-25T18:09:24.342Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-10-14T00:00:11.096Z","repositories_count":6082713,"commits_count":925402628,"contributors_count":36102742,"owners_count":1107065,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"DOI-USGS/streamMetabolizer","html_url":"https://github.com/DOI-USGS/streamMetabolizer","last_synced_at":"2025-09-23T22:59:10.555Z","status":null,"issues_count":66,"pull_requests_count":41,"avg_time_to_close_issue":16904658.22857143,"avg_time_to_close_pull_request":464955.7,"issues_closed_count":35,"pull_requests_closed_count":40,"pull_request_authors_count":5,"issue_authors_count":34,"avg_comments_per_issue":2.409090909090909,"avg_comments_per_pull_request":0.43902439024390244,"merged_pull_requests_count":40,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":7,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":3,"past_year_avg_comments_per_issue":0.14285714285714285,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-09-12T11:15:14.727Z","updated_at":"2025-09-23T22:59:10.556Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DOI-USGS%2FstreamMetabolizer/issues","issue_labels_count":{"ready":1,"docs \u0026 usability":1,"wontfix":1,"help wanted":1,"beginner":1},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":42,"CONTRIBUTOR":19,"COLLABORATOR":5},"pull_request_author_associations_count":{"CONTRIBUTOR":40,"COLLABORATOR":1},"issue_authors":{"aappling-usgs":22,"AbigailUVM":3,"mluerig":3,"Kelsman28":2,"sophieguillon":2,"amina-uwa":2,"nuwanma1986":2,"Tzu-Yao":2,"kqasem":2,"Jakob10er":2,"woodwardb1":1,"agcfzk":1,"NLopezRojo":1,"demelo-limno":1,"CasieSmith":1,"mclean-154":1,"dmcostello":1,"PsaltakisJ":1,"aaroncpelly":1,"akdodd":1,"robohall":1,"brodonnell":1,"berdaniera":1,"ldecicco-USGS":1,"JunjieLiu-WHU-UWA":1,"Justin495":1,"UanGQ0613":1,"jesse-ross":1,"mlbrooks":1,"samlbickley":1,"spencer-tassone":1,"cltorrens":1,"emjbarrie":1,"miralha":1},"pull_request_authors":{"aappling-usgs":36,"ldecicco-USGS":2,"jpadilla-usgs":1,"jesse-ross":1,"weisoon":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-10-14T00:00:11.008Z","repositories_count":10952322,"issues_count":32626185,"pull_requests_count":105821531,"authors_count":11036550,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{"COLLABORATOR":5,"NONE":2},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{"aappling-usgs":5,"spencer-tassone":1,"UanGQ0613":1},"past_year_pull_request_authors":{},"maintainers":[{"login":"aappling-usgs","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/aappling-usgs"},{"login":"jpadilla-usgs","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/jpadilla-usgs"}],"active_maintainers":[{"login":"aappling-usgs","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/aappling-usgs"}]},"events":{"total":{"IssuesEvent":6,"WatchEvent":3,"MemberEvent":1,"IssueCommentEvent":1,"ForkEvent":1},"last_year":{"IssuesEvent":6,"WatchEvent":3,"MemberEvent":1,"IssueCommentEvent":1,"ForkEvent":1}},"keywords":["r","rstats","usgs"],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-09-12T06:01:01.657Z","updated_at":"2022-09-12T06:01:01.657Z","repository_link":"https://github.com/DOI-USGS/streamMetabolizer/blob/main/DESCRIPTION","dependencies":[{"id":4573225773,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.0","direct":true,"kind":"depends","optional":false},{"id":4573225774,"package_name":"deSolve","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225775,"package_name":"dplyr","ecosystem":"cran","requirements":"\u003e= 0.5.0","direct":true,"kind":"imports","optional":false},{"id":4573225776,"package_name":"LakeMetabolizer","ecosystem":"cran","requirements":"\u003e= 1.4.1","direct":true,"kind":"imports","optional":false},{"id":4573225777,"package_name":"lazyeval","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225778,"package_name":"lifecycle","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225779,"package_name":"lubridate","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225780,"package_name":"magrittr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225781,"package_name":"methods","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225782,"package_name":"tibble","ecosystem":"cran","requirements":"\u003e= 1.1.0","direct":true,"kind":"imports","optional":false},{"id":4573225783,"package_name":"tidyr","ecosystem":"cran","requirements":"*","direct":true,"kind":"imports","optional":false},{"id":4573225784,"package_name":"unitted","ecosystem":"cran","requirements":"\u003e= 0.2.8","direct":true,"kind":"imports","optional":false},{"id":4573225785,"package_name":"chron","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225786,"package_name":"devtools","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225787,"package_name":"dygraphs","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225788,"package_name":"ggplot2","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225789,"package_name":"gridExtra","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225790,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225791,"package_name":"microbenchmark","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225792,"package_name":"RCurl","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225793,"package_name":"rstan","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225794,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225795,"package_name":"XML","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225796,"package_name":"xts","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":4573225797,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":6.966024187106113,"created_at":"2025-09-09T05:51:09.068Z","updated_at":"2025-10-14T20:00:51.633Z","avatar_url":"https://github.com/DOI-USGS.png","language":"Stan","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":["https://doi.org/10.1002/2017JG004140","https://doi.org/10.1038/sdata.2018.292"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["geo-data-portal","grid-data"],"project_url":"https://science.ecosyste.ms/api/v1/projects/224851","html_url":"https://science.ecosyste.ms/projects/224851"}