{"id":2256,"name":"pygen-structures","description":"pygen-structures: A Python package to generate 3D molecular structures for simulations using the CHARMM forcefield - Published in JOSS (2020)","url":"https://github.com/thesketh/pygen-structures","last_synced_at":"2025-09-04T16:43:47.350Z","repository":{"id":62580571,"uuid":"241861996","full_name":"thesketh/pygen-structures","owner":"thesketh","description":"3D molecular structure generation for MD simulation","archived":false,"fork":false,"pushed_at":"2020-04-29T11:51:56.000Z","size":24906,"stargazers_count":9,"open_issues_count":6,"forks_count":3,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-28T00:58:32.378Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://pygen-structures.readthedocs.io/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/thesketh.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-02-20T11:00:23.000Z","updated_at":"2023-09-29T10:11:09.000Z","dependencies_parsed_at":"2022-11-03T22:01:03.463Z","dependency_job_id":null,"html_url":"https://github.com/thesketh/pygen-structures","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/thesketh/pygen-structures","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/sbom","scorecard":{"id":880252,"data":{"date":"2025-08-11","repo":{"name":"github.com/thesketh/pygen-structures","commit":"3fe02e27581161db0ec521efdfe13868d735fac7"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.7,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 2/29 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact v0.2.5 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/26001762","Warn: release artifact v0.2.4 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/25167726","Warn: release artifact v0.2.3 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/24178945","Warn: release artifact 0.2.2 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/24178817","Warn: release artifact v0.2.5 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/26001762","Warn: release artifact v0.2.4 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/25167726","Warn: release artifact v0.2.3 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/24178945","Warn: release artifact 0.2.2 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/24178817"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 3 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T07:52:04.317Z","repository_id":62580571,"created_at":"2025-08-24T07:52:04.317Z","updated_at":"2025-08-24T07:52:04.317Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273574150,"owners_count":25129883,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"thesketh","name":"Travis Hesketh","uuid":"22580030","kind":"user","description":"Senior software developer working in healthcare. Former chem PGR.","email":"","website":null,"location":"London","twitter":"t_sketh","company":null,"icon_url":"https://avatars.githubusercontent.com/u/22580030?v=4","repositories_count":6,"last_synced_at":"2023-09-07T15:54:06.821Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/thesketh","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-07T15:54:06.913Z","updated_at":"2023-09-07T15:54:06.913Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh/repositories"},"packages":[{"id":2872121,"name":"pygen-structures","ecosystem":"pypi","description":"3D molecular structure generation for MD simulation","homepage":"https://github.com/thesketh/pygen-structures","licenses":"BSD License","normalized_licenses":["BSD-3-Clause"],"repository_url":"https://github.com/thesketh/pygen-structures","keywords_array":[],"namespace":null,"versions_count":6,"first_release_published_at":"2020-02-29T15:36:15.000Z","latest_release_published_at":"2020-04-29T11:43:17.000Z","latest_release_number":"0.2.5","last_synced_at":"2025-09-03T21:06:49.446Z","created_at":"2022-04-10T12:13:08.247Z","updated_at":"2025-09-04T07:58:09.337Z","registry_url":"https://pypi.org/project/pygen-structures/","install_command":"pip install pygen-structures --index-url https://pypi.org/simple","documentation_url":"https://pygen-structures.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 4 - Beta","Environment :: Console","Intended Audience :: Science/Research","License :: OSI Approved :: BSD License","Operating System :: OS Independent","Programming Language :: Python :: 3","Programming Language :: Python :: 3.7","Topic :: Scientific/Engineering :: Chemistry","Typing :: Typed"],"normalized_name":"pygen-structures","project_status":null},"repo_metadata":{"id":62580571,"uuid":"241861996","full_name":"thesketh/pygen-structures","owner":"thesketh","description":"3D molecular structure generation for MD simulation","archived":false,"fork":false,"pushed_at":"2020-04-29T11:51:56.000Z","size":24906,"stargazers_count":9,"open_issues_count":6,"forks_count":3,"subscribers_count":2,"default_branch":"master","last_synced_at":"2025-08-28T00:58:32.378Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"https://pygen-structures.readthedocs.io/en/latest/","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/thesketh.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2020-02-20T11:00:23.000Z","updated_at":"2023-09-29T10:11:09.000Z","dependencies_parsed_at":"2022-11-03T22:01:03.463Z","dependency_job_id":null,"html_url":"https://github.com/thesketh/pygen-structures","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/thesketh/pygen-structures","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/sbom","scorecard":{"id":880252,"data":{"date":"2025-08-11","repo":{"name":"github.com/thesketh/pygen-structures","commit":"3fe02e27581161db0ec521efdfe13868d735fac7"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":2.7,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 2/29 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: BSD 3-Clause \"New\" or \"Revised\" License: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":0,"reason":"Project has not signed or included provenance with any releases.","details":["Warn: release artifact v0.2.5 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/26001762","Warn: release artifact v0.2.4 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/25167726","Warn: release artifact v0.2.3 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/24178945","Warn: release artifact 0.2.2 not signed: https://api.github.com/repos/thesketh/pygen-structures/releases/24178817","Warn: release artifact v0.2.5 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/26001762","Warn: release artifact v0.2.4 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/25167726","Warn: release artifact v0.2.3 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/24178945","Warn: release artifact 0.2.2 does not have provenance: https://api.github.com/repos/thesketh/pygen-structures/releases/24178817"],"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 3 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T07:52:04.317Z","repository_id":62580571,"created_at":"2025-08-24T07:52:04.317Z","updated_at":"2025-08-24T07:52:04.317Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273574150,"owners_count":25129883,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"thesketh","name":"Travis Hesketh","uuid":"22580030","kind":"user","description":"Senior software developer working in healthcare. Former chem PGR.","email":"","website":null,"location":"London","twitter":"t_sketh","company":null,"icon_url":"https://avatars.githubusercontent.com/u/22580030?v=4","repositories_count":6,"last_synced_at":"2023-09-07T15:54:06.821Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/thesketh","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-09-07T15:54:06.913Z","updated_at":"2023-09-07T15:54:06.913Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/thesketh/repositories"},"tags":[{"name":"v0.2.5","sha":"3fe02e27581161db0ec521efdfe13868d735fac7","kind":"commit","published_at":"2020-04-29T11:50:10.000Z","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/v0.2.5","html_url":"https://github.com/thesketh/pygen-structures/releases/tag/v0.2.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/thesketh/pygen-structures@v0.2.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.5/manifests"},{"name":"v0.2.4","sha":"3b8159b3856bb921a3357ad4bb8bdae9c6420262","kind":"commit","published_at":"2020-04-03T11:05:51.000Z","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/v0.2.4","html_url":"https://github.com/thesketh/pygen-structures/releases/tag/v0.2.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/thesketh/pygen-structures@v0.2.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.4/manifests"},{"name":"v0.2.3","sha":"8f76490b4b02ad80110c817f167a092808aa29f7","kind":"commit","published_at":"2020-03-16T16:27:37.000Z","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/v0.2.3","html_url":"https://github.com/thesketh/pygen-structures/releases/tag/v0.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/thesketh/pygen-structures@v0.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/v0.2.3/manifests"},{"name":"0.2.2","sha":"18976810deee523c3f4bfec61cdfcf85db029fdb","kind":"commit","published_at":"2020-03-03T09:36:59.000Z","download_url":"https://codeload.github.com/thesketh/pygen-structures/tar.gz/0.2.2","html_url":"https://github.com/thesketh/pygen-structures/releases/tag/0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/thesketh/pygen-structures@0.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/tags/0.2.2/manifests"}]},"repo_metadata_updated_at":"2025-09-04T07:58:09.337Z","dependent_packages_count":0,"downloads":15,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":41.40403192176084,"dependent_repos_count":21.559058535118407,"dependent_packages_count":10.108852264313626,"stargazers_count":17.743197774388328,"forks_count":16.876098493576134,"docker_downloads_count":null,"average":21.538247797831467},"purl":"pkg:pypi/pygen-structures","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/pygen-structures","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/pygen-structures","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/pygen-structures/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T19:41:05.341Z","issues_count":9,"pull_requests_count":2,"avg_time_to_close_issue":315577.6666666667,"avg_time_to_close_pull_request":1535.5,"issues_closed_count":3,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":0.7777777777777778,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/issues","maintainers":[{"login":"thesketh","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/thesketh"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pygen-structures/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pygen-structures/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pygen-structures/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/pygen-structures/related_packages","maintainers":[{"uuid":"thesketh","login":"thesketh","name":null,"email":null,"url":null,"packages_count":6,"html_url":"https://pypi.org/user/thesketh/","role":null,"created_at":"2023-02-25T03:47:27.863Z","updated_at":"2023-02-25T03:47:27.863Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/thesketh/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":724727,"maintainers_count":308194,"namespaces_count":0,"keywords_count":237984,"github":"pypi","metadata":{"funded_packages_count":50481},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-04T05:23:51.177Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":636840,"full_name":"thesketh/pygen-structures","default_branch":"master","committers":[{"name":"Travis Hesketh","email":"travis.hesketh@strath.ac.uk","login":null,"count":35},{"name":"Travis Hesketh","email":"travis@hesketh.scot","login":"thesketh","count":32},{"name":"avanteijlingen","email":"57176642+avanteijlingen","login":"avanteijlingen","count":1},{"name":"Arfon Smith","email":"arfon","login":"arfon","count":1}],"total_commits":69,"total_committers":4,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":17.25,"dds":0.49275362318840576,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T07:01:38.474Z","last_synced_commit":"3fe02e27581161db0ec521efdfe13868d735fac7","created_at":"2023-03-09T08:39:48.796Z","updated_at":"2025-08-07T07:01:38.483Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"thesketh/pygen-structures","html_url":"https://github.com/thesketh/pygen-structures","last_synced_at":"2025-08-31T19:41:05.341Z","status":"error","issues_count":9,"pull_requests_count":2,"avg_time_to_close_issue":315577.6666666667,"avg_time_to_close_pull_request":1535.5,"issues_closed_count":3,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":2,"avg_comments_per_issue":0.7777777777777778,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":2,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T21:13:57.555Z","updated_at":"2025-08-31T19:41:05.342Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/thesketh%2Fpygen-structures/issues","issue_labels_count":{"bug":3,"documentation":2,"enhancement":1,"testing":1,"typing":1},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":8,"NONE":1},"pull_request_author_associations_count":{"CONTRIBUTOR":2},"issue_authors":{"thesketh":8,"amandadumi":1},"pull_request_authors":{"arfon":1,"avanteijlingen":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-01T00:00:07.725Z","repositories_count":9960864,"issues_count":29599243,"pull_requests_count":86024997,"authors_count":9558114,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"thesketh","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/thesketh"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"conda","filepath":"environment.yml","sha":null,"kind":"manifest","created_at":"2022-11-03T22:01:03.180Z","updated_at":"2022-11-03T22:01:03.180Z","repository_link":"https://github.com/thesketh/pygen-structures/blob/master/environment.yml","dependencies":[{"id":6587009383,"package_name":"numpy","ecosystem":"conda","requirements":"","direct":true,"kind":"runtime","optional":false},{"id":6587009384,"package_name":"rdkit","ecosystem":"conda","requirements":"\u003e=2018.03","direct":true,"kind":"runtime","optional":false}]},{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-11-03T22:01:03.319Z","updated_at":"2022-11-03T22:01:03.319Z","repository_link":"https://github.com/thesketh/pygen-structures/blob/master/setup.py","dependencies":[{"id":6587009396,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":6.927557906278317,"created_at":"2025-09-04T09:17:59.015Z","updated_at":"2025-10-07T08:04:38.422Z","avatar_url":"https://github.com/thesketh.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":15,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/2256","html_url":"https://science.ecosyste.ms/projects/2256"}