{"id":2333,"name":"DNAtools","description":"DNAtools: Tools for Analysing Forensic Genetic DNA Data - Published in JOSS (2020)","url":"https://github.com/mikldk/dnatools","last_synced_at":"2025-09-04T16:44:27.742Z","repository":{"id":56931254,"uuid":"164377111","full_name":"mikldk/DNAtools","owner":"mikldk","description":"Development version of the DNAtools R-package","archived":false,"fork":false,"pushed_at":"2024-05-15T22:03:43.000Z","size":1496,"stargazers_count":0,"open_issues_count":1,"forks_count":3,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-28T01:01:25.885Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mikldk.png","metadata":{"files":{"readme":"README.Rmd","changelog":"NEWS","contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2019-01-07T04:13:27.000Z","updated_at":"2022-03-15T19:51:26.000Z","dependencies_parsed_at":"2025-04-14T17:04:16.936Z","dependency_job_id":"af449ab6-8aac-40e1-a866-42d534c3f395","html_url":"https://github.com/mikldk/DNAtools","commit_stats":null,"previous_names":[],"tags_count":4,"template":false,"template_full_name":null,"purl":"pkg:github/mikldk/DNAtools","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273605519,"owners_count":25135768,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-04T02:00:08.968Z","response_time":61,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"mikldk","name":"Mikkel Meyer Andersen","uuid":"7080679","kind":"user","description":null,"email":"","website":null,"location":"Denmark","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/7080679?u=b9db555fcc0f9cb0f38750ebec814de1c8010194\u0026v=4","repositories_count":64,"last_synced_at":"2024-03-31T01:01:13.352Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/mikldk","funding_links":[],"total_stars":119,"followers":32,"following":9,"created_at":"2022-11-09T07:38:09.817Z","updated_at":"2024-03-31T01:01:14.834Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk/repositories"},"packages":[{"id":418661,"name":"DNAtools","ecosystem":"cran","description":"Tools for Analysing Forensic Genetic DNA Data","homepage":null,"licenses":"GPL-2 | GPL-3 | file LICENSE [expanded from: GPL (≥ 2) | file LICENSE]","normalized_licenses":["Sendmail"],"repository_url":"https://github.com/mikldk/DNAtools","keywords_array":[],"namespace":null,"versions_count":15,"first_release_published_at":"2010-12-06T08:48:00.000Z","latest_release_published_at":"2022-03-17T00:00:00.000Z","latest_release_number":"0.2-4","last_synced_at":"2025-09-03T21:12:07.750Z","created_at":"2022-04-06T18:03:19.383Z","updated_at":"2025-09-03T21:12:07.750Z","registry_url":"https://cran.r-project.org/package=DNAtools","install_command":null,"documentation_url":"http://cran.r-project.org/web/packages/DNAtools/DNAtools.pdf","metadata":{},"repo_metadata":{"uuid":"164377111","full_name":"mikldk/DNAtools","owner":"mikldk","description":"Development version of the DNAtools R-package","archived":false,"fork":false,"pushed_at":"2023-01-02T13:21:26.000Z","size":1496,"stargazers_count":0,"open_issues_count":1,"forks_count":3,"subscribers_count":4,"default_branch":"master","last_synced_at":"2023-10-25T13:23:22.699Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"R","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/mikldk.png","metadata":{"files":{"readme":"README.Rmd","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null}},"created_at":"2019-01-07T04:13:27.000Z","updated_at":"2022-03-15T19:51:26.000Z","dependencies_parsed_at":"2023-02-01T03:00:31.648Z","dependency_job_id":null,"html_url":"https://github.com/mikldk/DNAtools","commit_stats":null,"previous_names":[],"tags_count":4,"repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/refs/heads/master","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":172188377,"owners_count":9793176,"icon_url":"https://github.com/github.png","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"mikldk","name":"Mikkel Meyer Andersen","uuid":"7080679","kind":"user","description":null,"email":"","website":null,"location":"Denmark","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/7080679?u=b9db555fcc0f9cb0f38750ebec814de1c8010194\u0026v=4","repositories_count":9,"last_synced_at":"2023-02-25T19:55:47.127Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/mikldk","created_at":"2022-11-09T07:38:09.817Z","updated_at":"2023-02-25T19:55:47.139Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/mikldk/repositories"},"tags":[{"name":"0.2-4","sha":"0fb218a2c6f3d0416c964ec1d9cf9e1be37a77ac","kind":"commit","published_at":"2022-03-17T13:02:44.000Z","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/0.2-4","html_url":"https://github.com/mikldk/DNAtools/releases/tag/0.2-4","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-4/manifests"},{"name":"0.2-3","sha":"4abbd7a31de6407d411363a15cd72d22ac62c959","kind":"commit","published_at":"2020-07-08T12:38:47.000Z","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/0.2-3","html_url":"https://github.com/mikldk/DNAtools/releases/tag/0.2-3","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-3/manifests"},{"name":"0.2-2","sha":"e19a5191f0c23d1e74c436ae6ecffe89cf188627","kind":"commit","published_at":"2020-03-03T14:40:20.000Z","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/0.2-2","html_url":"https://github.com/mikldk/DNAtools/releases/tag/0.2-2","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-2/manifests"},{"name":"0.2-1","sha":"d25fc87e7760f6fe7ed65b853618a76b1f966b31","kind":"commit","published_at":"2020-01-16T09:14:07.000Z","download_url":"https://codeload.github.com/mikldk/DNAtools/tar.gz/0.2-1","html_url":"https://github.com/mikldk/DNAtools/releases/tag/0.2-1","dependencies_parsed_at":null,"dependency_job_id":null,"tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/tags/0.2-1/manifests"}]},"repo_metadata_updated_at":"2023-11-20T10:21:24.011Z","dependent_packages_count":1,"downloads":376,"downloads_period":"last-month","dependent_repos_count":2,"rankings":{"downloads":32.724844167408726,"dependent_repos_count":19.265360641139804,"dependent_packages_count":18.14781834372217,"stargazers_count":34.58147818343722,"forks_count":14.210643509240702,"docker_downloads_count":null,"average":23.786028968989726},"purl":"pkg:cran/DNAtools","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/cran/DNAtools","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/cran/DNAtools","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/cran/DNAtools/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2023-10-19T14:24:43.070Z","issues_count":4,"pull_requests_count":1,"avg_time_to_close_issue":247797.66666666666,"avg_time_to_close_pull_request":446.0,"issues_closed_count":3,"pull_requests_closed_count":1,"pull_request_authors_count":1,"issue_authors_count":3,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":1,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":1,"past_year_avg_comments_per_issue":3.0,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/DNAtools/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/DNAtools/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/DNAtools/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages/DNAtools/related_packages","maintainers":[{"uuid":"mikl@math.aau.dk","login":null,"name":"Mikkel Meyer Andersen","email":"mikl@math.aau.dk","url":null,"packages_count":10,"html_url":null,"role":null,"created_at":"2022-11-14T17:15:10.956Z","updated_at":"2022-11-14T17:15:10.956Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers/mikl@math.aau.dk/packages"}],"registry":{"name":"cran.r-project.org","url":"https://cran.r-project.org","ecosystem":"cran","default":true,"packages_count":26169,"maintainers_count":14292,"namespaces_count":0,"keywords_count":8317,"github":"r-project-org","metadata":{"funded_packages_count":539},"icon_url":"https://github.com/r-project-org.png","created_at":"2022-04-06T16:32:25.637Z","updated_at":"2025-09-04T07:00:40.033Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/cran.r-project.org/namespaces"}}],"commits":{"id":720226,"full_name":"mikldk/DNAtools","default_branch":"master","committers":[{"name":"Mikkel Meyer Andersen","email":"mikl@mikl.dk","login":"mikldk","count":72},{"name":"tvedebrink","email":"tvede@math.aau.dk","login":null,"count":8},{"name":"jmcurran","email":"j.curran@auckland.ac.nz","login":"jmcurran","count":4},{"name":"Torben Tvedebrink","email":"tvedebrink","login":"tvedebrink","count":1},{"name":"Charlotte Soneson","email":"charlottesoneson@gmail.com","login":"csoneson","count":1}],"total_commits":86,"total_committers":5,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":17.2,"dds":0.16279069767441856,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T07:08:17.352Z","last_synced_commit":"2205017e9e7ddbebca4d6703ca1b1e112987af8a","created_at":"2023-03-09T13:02:05.047Z","updated_at":"2025-08-07T07:08:17.360Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-30T00:00:08.254Z","repositories_count":5479765,"commits_count":853310318,"contributors_count":31095240,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"mikldk/DNAtools","html_url":"https://github.com/mikldk/DNAtools","last_synced_at":"2025-08-31T19:41:23.424Z","status":"error","issues_count":4,"pull_requests_count":2,"avg_time_to_close_issue":247797.66666666666,"avg_time_to_close_pull_request":1788602.5,"issues_closed_count":3,"pull_requests_closed_count":2,"pull_request_authors_count":2,"issue_authors_count":3,"avg_comments_per_issue":2.5,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":1,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-10T22:15:47.008Z","updated_at":"2025-09-01T20:24:54.850Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/mikldk%2FDNAtools/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{"NONE":4},"pull_request_author_associations_count":{"NONE":2,"CONTRIBUTOR":1},"issue_authors":{"standage":2,"thoree":1,"tomsing1":1},"pull_request_authors":{"andrjohns":2,"csoneson":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.986Z","repositories_count":10042729,"issues_count":30645220,"pull_requests_count":91402388,"authors_count":10443886,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":[],"dependencies":[{"ecosystem":"cran","filepath":"DESCRIPTION","sha":null,"kind":"manifest","created_at":"2022-08-21T05:50:29.388Z","updated_at":"2022-08-21T05:50:29.388Z","repository_link":"https://github.com/mikldk/DNAtools/blob/master/DESCRIPTION","dependencies":[{"id":2201950182,"package_name":"R","ecosystem":"cran","requirements":"\u003e= 3.3.0","direct":true,"kind":"depends","optional":false},{"id":2201950183,"package_name":"Rsolnp","ecosystem":"cran","requirements":"\u003e= 1.16","direct":true,"kind":"imports","optional":false},{"id":2201950184,"package_name":"multicool","ecosystem":"cran","requirements":"\u003e= 0.1","direct":true,"kind":"imports","optional":false},{"id":2201950185,"package_name":"Rcpp","ecosystem":"cran","requirements":"\u003e= 0.12.12","direct":true,"kind":"imports","optional":false},{"id":2201950186,"package_name":"RcppParallel","ecosystem":"cran","requirements":"\u003e= 4.3.20","direct":true,"kind":"imports","optional":false},{"id":2201950187,"package_name":"testthat","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2201950188,"package_name":"testthis","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2201950189,"package_name":"knitr","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false},{"id":2201950190,"package_name":"rmarkdown","ecosystem":"cran","requirements":"*","direct":true,"kind":"suggests","optional":false}]}],"score":7.549609165154532,"created_at":"2025-09-04T09:18:00.162Z","updated_at":"2025-10-07T08:04:39.009Z","avatar_url":"https://github.com/mikldk.png","language":"R","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":376,"funding_links":[],"readme_doi_urls":["https://doi.org/10.21105/joss.01981"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/2333","html_url":"https://science.ecosyste.ms/projects/2333"}