{"id":25923,"name":"proteomics-data-analysis-tutorial","description":"A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.","url":"https://github.com/pnnl-comp-mass-spec/proteomics-data-analysis-tutorial","last_synced_at":"2025-09-05T02:59:40.137Z","repository":{"id":39670852,"uuid":"404174682","full_name":"PNNL-Comp-Mass-Spec/proteomics-data-analysis-tutorial","owner":"PNNL-Comp-Mass-Spec","description":"A comprehensive tutorial for proteomics data analysis in R that utilizes packages developed by researchers at PNNL and from Bioconductor.","archived":false,"fork":false,"pushed_at":"2022-05-28T04:27:19.000Z","size":41917,"stargazers_count":8,"open_issues_count":0,"forks_count":5,"subscribers_count":5,"default_branch":"master","last_synced_at":"2025-04-13T12:13:26.859Z","etag":null,"topics":["data-analysis","proteomics"],"latest_commit_sha":null,"homepage":"https://pnnl-comp-mass-spec.github.io/proteomics-data-analysis-tutorial/","language":"TeX","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/PNNL-Comp-Mass-Spec.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2021-09-08T01:38:02.000Z","updated_at":"2024-12-06T07:45:14.000Z","dependencies_parsed_at":"2022-09-20T07:50:55.650Z","dependency_job_id":null,"html_url":"https://github.com/PNNL-Comp-Mass-Spec/proteomics-data-analysis-tutorial","commit_stats":null,"previous_names":[],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/PNNL-Comp-Mass-Spec/proteomics-data-analysis-tutorial","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PNNL-Comp-Mass-Spec%2Fproteomics-data-analysis-tutorial","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PNNL-Comp-Mass-Spec%2Fproteomics-data-analysis-tutorial/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PNNL-Comp-Mass-Spec%2Fproteomics-data-analysis-tutorial/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PNNL-Comp-Mass-Spec%2Fproteomics-data-analysis-tutorial/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PNNL-Comp-Mass-Spec","download_url":"https://codeload.github.com/PNNL-Comp-Mass-Spec/proteomics-data-analysis-tutorial/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PNNL-Comp-Mass-Spec%2Fproteomics-data-analysis-tutorial/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273703685,"owners_count":25153002,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"PNNL-Comp-Mass-Spec","name":"Computational Mass Spectrometry @ Pacific Northwest National Laboratory","uuid":"6225798","kind":"organization","description":"","email":null,"website":"https://omics.pnl.gov/software/","location":"Richland, WA","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/6225798?v=4","repositories_count":177,"last_synced_at":"2023-08-07T09:20:43.993Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/PNNL-Comp-Mass-Spec","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T19:01:30.789Z","updated_at":"2023-08-07T09:20:44.896Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PNNL-Comp-Mass-Spec","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/PNNL-Comp-Mass-Spec/repositories"},"packages":null,"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"pnnl-comp-mass-spec/proteomics-data-analysis-tutorial","html_url":"https://github.com/pnnl-comp-mass-spec/proteomics-data-analysis-tutorial","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T02:58:38.653Z","updated_at":"2025-09-05T02:58:38.653Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pnnl-comp-mass-spec%2Fproteomics-data-analysis-tutorial","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/pnnl-comp-mass-spec%2Fproteomics-data-analysis-tutorial/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10083752,"issues_count":31254324,"pull_requests_count":96222393,"authors_count":10694625,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":3},"last_year":{"WatchEvent":3}},"keywords":["data-analysis","proteomics"],"dependencies":[],"score":null,"created_at":"2025-09-04T15:50:57.959Z","updated_at":"2025-10-07T08:11:44.028Z","avatar_url":"https://github.com/PNNL-Comp-Mass-Spec.png","language":"TeX","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/25923","html_url":"https://science.ecosyste.ms/projects/25923","bibtex_url":"https://science.ecosyste.ms/projects/25923/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/25923/export.apalike"}