{"id":26218,"name":"singledeep","description":"Code to run singleDeep for phenotype prediction of samples from scRNA-Seq data","url":"https://github.com/genyo-bioinformatics/singledeep","last_synced_at":"2025-09-05T03:06:30.656Z","repository":{"id":217182475,"uuid":"656665718","full_name":"GENyO-BioInformatics/singleDeep","owner":"GENyO-BioInformatics","description":"Code to run singleDeep for phenotype prediction of samples from scRNA-Seq data","archived":false,"fork":false,"pushed_at":"2024-09-26T09:32:13.000Z","size":15804,"stargazers_count":6,"open_issues_count":0,"forks_count":0,"subscribers_count":3,"default_branch":"main","last_synced_at":"2025-04-13T12:30:32.945Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":null,"language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"gpl-3.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/GENyO-BioInformatics.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2023-06-21T11:47:50.000Z","updated_at":"2025-03-04T06:34:02.000Z","dependencies_parsed_at":"2024-01-14T23:55:19.817Z","dependency_job_id":"c62e753d-d205-413e-9c2c-2d12460b8fac","html_url":"https://github.com/GENyO-BioInformatics/singleDeep","commit_stats":null,"previous_names":["genyo-bioinformatics/singledeep"],"tags_count":0,"template":false,"template_full_name":null,"purl":"pkg:github/GENyO-BioInformatics/singleDeep","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GENyO-BioInformatics%2FsingleDeep","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GENyO-BioInformatics%2FsingleDeep/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GENyO-BioInformatics%2FsingleDeep/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GENyO-BioInformatics%2FsingleDeep/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GENyO-BioInformatics","download_url":"https://codeload.github.com/GENyO-BioInformatics/singleDeep/tar.gz/refs/heads/main","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/GENyO-BioInformatics%2FsingleDeep/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273703718,"owners_count":25153011,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"GENyO-BioInformatics","name":"GENyO BioInformatics","uuid":"42147602","kind":"organization","description":"Next Generation Sequencing pipelines, workflows and tools to analyse the data derived from it. We are mainly focused on Cancer and Autoinmune diseases. ","email":"bioinfo@genyo.es","website":"http://www.genyo.es/en/bioinformatics-unit","location":"Granada, Andalucia, Spain","twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/42147602?v=4","repositories_count":6,"last_synced_at":"2023-03-29T20:33:24.917Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/GENyO-BioInformatics","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2023-03-29T20:29:10.576Z","updated_at":"2023-03-29T20:33:24.920Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GENyO-BioInformatics","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/GENyO-BioInformatics/repositories"},"packages":[],"commits":{"message":"Repository syncing started."},"issues_stats":{"full_name":"genyo-bioinformatics/singledeep","html_url":"https://github.com/genyo-bioinformatics/singledeep","last_synced_at":null,"status":null,"issues_count":null,"pull_requests_count":null,"avg_time_to_close_issue":null,"avg_time_to_close_pull_request":null,"issues_closed_count":null,"pull_requests_closed_count":null,"pull_request_authors_count":null,"issue_authors_count":null,"avg_comments_per_issue":null,"avg_comments_per_pull_request":null,"merged_pull_requests_count":null,"bot_issues_count":null,"bot_pull_requests_count":null,"past_year_issues_count":null,"past_year_pull_requests_count":null,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":null,"past_year_pull_requests_closed_count":null,"past_year_pull_request_authors_count":null,"past_year_issue_authors_count":null,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":null,"past_year_bot_pull_requests_count":null,"past_year_merged_pull_requests_count":null,"created_at":"2025-09-05T03:05:35.426Z","updated_at":"2025-09-05T03:05:35.426Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/genyo-bioinformatics%2Fsingledeep","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/genyo-bioinformatics%2Fsingledeep/issues","issue_labels_count":{},"pull_request_labels_count":{},"issue_author_associations_count":{},"pull_request_author_associations_count":{},"issue_authors":{},"pull_request_authors":{},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.444Z","repositories_count":10083752,"issues_count":31254324,"pull_requests_count":96222393,"authors_count":10694625,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[],"active_maintainers":[]},"events":{"total":{"WatchEvent":6},"last_year":{"WatchEvent":6}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"requirements.txt","sha":null,"kind":"manifest","created_at":"2024-01-14T23:55:18.161Z","updated_at":"2024-01-14T23:55:18.161Z","repository_link":"https://github.com/GENyO-BioInformatics/singleDeep/blob/main/requirements.txt","dependencies":[{"id":15614875981,"package_name":"torch","ecosystem":"pypi","requirements":"==1.11.0","direct":true,"kind":"runtime","optional":false},{"id":15614875982,"package_name":"pandas","ecosystem":"pypi","requirements":"==1.5.3","direct":true,"kind":"runtime","optional":false},{"id":15614875983,"package_name":"scikit-learn","ecosystem":"pypi","requirements":"==1.3.1","direct":true,"kind":"runtime","optional":false},{"id":15614875984,"package_name":"numpy","ecosystem":"pypi","requirements":"==1.23.0","direct":true,"kind":"runtime","optional":false},{"id":15614875985,"package_name":"captum","ecosystem":"pypi","requirements":"==0.6.0","direct":true,"kind":"runtime","optional":false},{"id":15614876583,"package_name":"scanpy","ecosystem":"pypi","requirements":"==1.9.6","direct":true,"kind":"runtime","optional":false},{"id":15614876903,"package_name":"tensorboard","ecosystem":"pypi","requirements":"==2.9.0","direct":true,"kind":"runtime","optional":false}]}],"score":null,"created_at":"2025-09-04T15:50:58.282Z","updated_at":"2025-10-07T08:11:49.369Z","avatar_url":"https://github.com/GENyO-BioInformatics.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/26218","html_url":"https://science.ecosyste.ms/projects/26218","bibtex_url":"https://science.ecosyste.ms/projects/26218/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/26218/export.apalike"}