{"id":2640,"name":"Bedparse","description":"Bedparse: feature extraction from BED files - Published in JOSS (2019)","url":"https://github.com/tleonardi/bedparse","last_synced_at":"2025-09-04T16:50:46.919Z","repository":{"id":57414536,"uuid":"93838349","full_name":"tleonardi/bedparse","owner":"tleonardi","description":"Python module and CLI tool to perform operations on BED files","archived":false,"fork":false,"pushed_at":"2020-01-23T12:04:55.000Z","size":70705,"stargazers_count":13,"open_issues_count":4,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-28T01:04:36.822Z","etag":null,"topics":["bed-files","bioinformatics","cli"],"latest_commit_sha":null,"homepage":"http://bedparse.rtfd.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tleonardi.png","metadata":{"files":{"readme":"README.md","changelog":"Changelog.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-06-09T08:44:25.000Z","updated_at":"2025-05-22T12:32:37.000Z","dependencies_parsed_at":"2022-09-02T14:51:11.857Z","dependency_job_id":null,"html_url":"https://github.com/tleonardi/bedparse","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/tleonardi/bedparse","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/sbom","scorecard":{"id":889352,"data":{"date":"2025-08-11","repo":{"name":"github.com/tleonardi/bedparse","commit":"b2833706a006504b267b9a0692334a7d18e44e5c"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.5,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Code-Review","score":0,"reason":"Found 1/25 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: MIT License: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 7 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T11:11:28.335Z","repository_id":57414536,"created_at":"2025-08-24T11:11:28.335Z","updated_at":"2025-08-24T11:11:28.335Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273511102,"owners_count":25118659,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"tleonardi","name":"Tommaso Leonardi","uuid":"5982835","kind":"user","description":null,"email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/5982835?u=7c1c35a21e48dfc0f295188b9440aa8bf0f6679f\u0026v=4","repositories_count":35,"last_synced_at":"2023-08-06T05:20:44.426Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/tleonardi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T14:29:40.546Z","updated_at":"2023-08-06T05:20:44.507Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi/repositories"},"packages":[{"id":2653783,"name":"bedparse","ecosystem":"pypi","description":"A simple library and CLI tool to manipulate BED files","homepage":"https://github.com/tleonardi/bedparse","licenses":"MIT","normalized_licenses":["MIT"],"repository_url":"https://github.com/tleonardi/bedparse","keywords_array":[],"namespace":null,"versions_count":7,"first_release_published_at":"2017-11-15T18:11:29.000Z","latest_release_published_at":"2020-01-23T12:10:14.000Z","latest_release_number":"0.2.3","last_synced_at":"2025-09-03T21:15:39.462Z","created_at":"2022-04-10T10:10:41.750Z","updated_at":"2025-09-04T07:58:54.855Z","registry_url":"https://pypi.org/project/bedparse/","install_command":"pip install bedparse --index-url https://pypi.org/simple","documentation_url":"https://bedparse.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 5 - Production/Stable","License :: OSI Approved :: MIT License","Programming Language :: Python :: 3.4","Programming Language :: Python :: 3.5","Programming Language :: Python :: 3.6"],"normalized_name":"bedparse","project_status":null},"repo_metadata":{"id":57414536,"uuid":"93838349","full_name":"tleonardi/bedparse","owner":"tleonardi","description":"Python module and CLI tool to perform operations on BED files","archived":false,"fork":false,"pushed_at":"2020-01-23T12:04:55.000Z","size":70705,"stargazers_count":13,"open_issues_count":4,"forks_count":4,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-08-28T01:04:36.822Z","etag":null,"topics":["bed-files","bioinformatics","cli"],"latest_commit_sha":null,"homepage":"http://bedparse.rtfd.io","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"mit","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/tleonardi.png","metadata":{"files":{"readme":"README.md","changelog":"Changelog.md","contributing":"CONTRIBUTING.md","funding":null,"license":"LICENSE.txt","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-06-09T08:44:25.000Z","updated_at":"2025-05-22T12:32:37.000Z","dependencies_parsed_at":"2022-09-02T14:51:11.857Z","dependency_job_id":null,"html_url":"https://github.com/tleonardi/bedparse","commit_stats":null,"previous_names":[],"tags_count":7,"template":false,"template_full_name":null,"purl":"pkg:github/tleonardi/bedparse","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/sbom","scorecard":{"id":889352,"data":{"date":"2025-08-11","repo":{"name":"github.com/tleonardi/bedparse","commit":"b2833706a006504b267b9a0692334a7d18e44e5c"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.5,"checks":[{"name":"Dangerous-Workflow","score":-1,"reason":"no workflows found","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":-1,"reason":"No tokens found","details":null,"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Code-Review","score":0,"reason":"Found 1/25 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE.txt:0","Info: FSF or OSI recognized license: MIT License: LICENSE.txt:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":-1,"reason":"internal error: error during branchesHandler.setup: internal error: githubv4.Query: Resource not accessible by integration","details":null,"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":-1,"reason":"no dependencies found","details":null,"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 7 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-24T11:11:28.335Z","repository_id":57414536,"created_at":"2025-08-24T11:11:28.335Z","updated_at":"2025-08-24T11:11:28.335Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273511102,"owners_count":25118659,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"tleonardi","name":"Tommaso Leonardi","uuid":"5982835","kind":"user","description":null,"email":"","website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/5982835?u=7c1c35a21e48dfc0f295188b9440aa8bf0f6679f\u0026v=4","repositories_count":35,"last_synced_at":"2023-08-06T05:20:44.426Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/tleonardi","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-06T14:29:40.546Z","updated_at":"2023-08-06T05:20:44.507Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/tleonardi/repositories"},"tags":[{"name":"v0.2.3","sha":"b2833706a006504b267b9a0692334a7d18e44e5c","kind":"commit","published_at":"2020-01-23T12:02:10.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.2.3","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.2.3","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.2.3","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.3","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.3/manifests"},{"name":"v0.2.2","sha":"c1c9b63cea2d73f8267dc8486ed9e7d335d53bc4","kind":"tag","published_at":"2019-02-27T09:55:42.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.2.2","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.2.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.2.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.2/manifests"},{"name":"v0.2.1","sha":"d26c28f75c89982e4344a838e6630ce56c9e8301","kind":"tag","published_at":"2019-02-25T13:07:13.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.2.1","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.2.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.2.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.1/manifests"},{"name":"v0.2.0","sha":"b3c03b8c48337ce1d324792e0477339773226e05","kind":"tag","published_at":"2019-01-21T16:53:41.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.2.0","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.2.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.2.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.2.0/manifests"},{"name":"v0.1.1","sha":"6cb7455c49c9152a5e32d3297517b9808b2c6bb3","kind":"tag","published_at":"2018-11-20T12:58:29.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.1.1","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.1.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.1.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.1/manifests"},{"name":"v0.1.2","sha":"e049743312949646284e9a9e56656ae029a02b58","kind":"tag","published_at":"2018-11-20T12:57:02.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.1.2","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.1.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.1.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.2/manifests"},{"name":"v0.1.0b1","sha":"47d38cfe2cc3a9b77441c712bc484043dafc5c56","kind":"commit","published_at":"2017-11-15T17:38:17.000Z","download_url":"https://codeload.github.com/tleonardi/bedparse/tar.gz/v0.1.0b1","html_url":"https://github.com/tleonardi/bedparse/releases/tag/v0.1.0b1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/tleonardi/bedparse@v0.1.0b1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.0b1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/tags/v0.1.0b1/manifests"}]},"repo_metadata_updated_at":"2025-09-04T07:58:54.855Z","dependent_packages_count":0,"downloads":327,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":31.57216249462071,"dependent_repos_count":21.559058535118407,"dependent_packages_count":10.108852264313626,"stargazers_count":16.06805221017356,"forks_count":15.368540057212353,"docker_downloads_count":2.9436792659362836,"average":16.270057471229155},"purl":"pkg:pypi/bedparse","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/bedparse","docker_dependents_count":1,"docker_downloads_count":51,"usage_url":"https://repos.ecosyste.ms/usage/pypi/bedparse","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/bedparse/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-08-31T19:44:24.366Z","issues_count":15,"pull_requests_count":9,"avg_time_to_close_issue":7576559.181818182,"avg_time_to_close_pull_request":51630.555555555555,"issues_closed_count":11,"pull_requests_closed_count":9,"pull_request_authors_count":4,"issue_authors_count":4,"avg_comments_per_issue":0.6666666666666666,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/issues","maintainers":[{"login":"tleonardi","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tleonardi"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/bedparse/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/bedparse/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/bedparse/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/bedparse/related_packages","maintainers":[{"uuid":"tleonardi","login":"tleonardi","name":null,"email":null,"url":null,"packages_count":2,"html_url":"https://pypi.org/user/tleonardi/","role":null,"created_at":"2023-02-23T16:58:10.821Z","updated_at":"2023-02-23T16:58:10.821Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/tleonardi/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":724742,"maintainers_count":308195,"namespaces_count":0,"keywords_count":237984,"github":"pypi","metadata":{"funded_packages_count":50481},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-04T05:23:51.177Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":541688,"full_name":"tleonardi/bedparse","default_branch":"master","committers":[{"name":"Tommaso Leonardi","email":"tom@itm6.xyz","login":"tleonardi","count":62},{"name":"Tommaso Leonardi","email":"tom@tleo.io","login":null,"count":45},{"name":"Tommaso Leonardi","email":"tl344@ebi.ac.uk","login":null,"count":4}],"total_commits":111,"total_committers":3,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":37.0,"dds":0.4414414414414415,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2025-08-07T07:15:09.310Z","last_synced_commit":"b2833706a006504b267b9a0692334a7d18e44e5c","created_at":"2023-03-09T04:14:28.392Z","updated_at":"2025-08-07T07:15:09.310Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-02T00:00:07.521Z","repositories_count":5480026,"commits_count":853390672,"contributors_count":31098202,"owners_count":906559,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"tleonardi/bedparse","html_url":"https://github.com/tleonardi/bedparse","last_synced_at":"2025-08-31T19:44:24.366Z","status":"error","issues_count":15,"pull_requests_count":9,"avg_time_to_close_issue":7576559.181818182,"avg_time_to_close_pull_request":51630.555555555555,"issues_closed_count":11,"pull_requests_closed_count":9,"pull_request_authors_count":4,"issue_authors_count":4,"avg_comments_per_issue":0.6666666666666666,"avg_comments_per_pull_request":1.0,"merged_pull_requests_count":9,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T09:41:25.547Z","updated_at":"2025-08-31T19:44:24.366Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/tleonardi%2Fbedparse/issues","issue_labels_count":{"Feature request":2,"TODO":2},"pull_request_labels_count":{},"issue_author_associations_count":{"OWNER":9,"NONE":6},"pull_request_author_associations_count":{"NONE":6,"CONTRIBUTOR":2,"OWNER":1},"issue_authors":{"tleonardi":9,"Benjamin-Lee":4,"samir-watson":1,"lucapandolfini":1},"pull_request_authors":{"Benjamin-Lee":5,"camillaugolini-iit":2,"arfon":1,"tleonardi":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-31T00:00:11.523Z","repositories_count":9891406,"issues_count":28931495,"pull_requests_count":82701144,"authors_count":8420232,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"tleonardi","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/tleonardi"}],"active_maintainers":[]},"events":{"total":{},"last_year":{}},"keywords":["bed-files","bioinformatics","cli"],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-02T14:51:11.777Z","updated_at":"2022-09-02T14:51:11.777Z","repository_link":"https://github.com/tleonardi/bedparse/blob/master/setup.py","dependencies":[{"id":3611284637,"package_name":"argparse","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":3611284638,"package_name":"setuptools","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":9.874625007851026,"created_at":"2025-09-04T09:18:04.074Z","updated_at":"2025-10-07T08:04:41.188Z","avatar_url":"https://github.com/tleonardi.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":327,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.2578820","https://doi.org/10.21105/joss.01228_"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/2640","html_url":"https://science.ecosyste.ms/projects/2640"}