{"id":26893,"name":"iscore","description":"iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines","url":"https://github.com/deeprank/iscore","last_synced_at":"2025-09-05T03:23:24.137Z","repository":{"id":38709709,"uuid":"137098046","full_name":"DeepRank/iScore","owner":"DeepRank","description":"iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines","archived":false,"fork":false,"pushed_at":"2022-06-25T09:12:45.000Z","size":21654,"stargazers_count":31,"open_issues_count":12,"forks_count":10,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-07-02T01:41:37.985Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DeepRank.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2018-06-12T16:16:02.000Z","updated_at":"2025-05-21T08:10:47.000Z","dependencies_parsed_at":"2022-09-14T02:51:36.262Z","dependency_job_id":null,"html_url":"https://github.com/DeepRank/iScore","commit_stats":null,"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/DeepRank/iScore","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/sbom","scorecard":{"id":38904,"data":{"date":"2025-08-11","repo":{"name":"github.com/DeepRank/iScore","commit":"ccfa5b332670ffa71d0e994d558a90c2b29f7002"},"scorecard":{"version":"v5.2.1-40-gf6ed084d","commit":"f6ed084d17c9236477efd66e5b258b9d4cc7b389"},"score":3.4,"checks":[{"name":"Maintained","score":0,"reason":"0 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project is \"actively maintained\".","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#maintained"}},{"name":"Code-Review","score":0,"reason":"Found 1/17 approved changesets -- score normalized to 0","details":null,"documentation":{"short":"Determines if the project requires human code review before pull requests (aka merge requests) are merged.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#code-review"}},{"name":"Dangerous-Workflow","score":10,"reason":"no dangerous workflow patterns detected","details":null,"documentation":{"short":"Determines if the project's GitHub Action workflows avoid dangerous patterns.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#dangerous-workflow"}},{"name":"Token-Permissions","score":0,"reason":"detected GitHub workflow tokens with excessive permissions","details":["Warn: no topLevel permission defined: .github/workflows/build_test.yml:1","Warn: no topLevel permission defined: .github/workflows/cffconvert.yml:1","Warn: no topLevel permission defined: .github/workflows/publish_pypi.yml:1","Info: no jobLevel write permissions found"],"documentation":{"short":"Determines if the project's workflows follow the principle of least privilege.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#token-permissions"}},{"name":"CII-Best-Practices","score":0,"reason":"no effort to earn an OpenSSF best practices badge detected","details":null,"documentation":{"short":"Determines if the project has an OpenSSF (formerly CII) Best Practices Badge.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#cii-best-practices"}},{"name":"Security-Policy","score":0,"reason":"security policy file not detected","details":["Warn: no security policy file detected","Warn: no security file to analyze","Warn: no security file to analyze","Warn: no security file to analyze"],"documentation":{"short":"Determines if the project has published a security policy.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#security-policy"}},{"name":"Binary-Artifacts","score":10,"reason":"no binaries found in the repo","details":null,"documentation":{"short":"Determines if the project has generated executable (binary) artifacts in the source repository.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#binary-artifacts"}},{"name":"Fuzzing","score":0,"reason":"project is not fuzzed","details":["Warn: no fuzzer integrations found"],"documentation":{"short":"Determines if the project uses fuzzing.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#fuzzing"}},{"name":"Packaging","score":-1,"reason":"packaging workflow not detected","details":["Warn: no GitHub/GitLab publishing workflow detected."],"documentation":{"short":"Determines if the project is published as a package that others can easily download, install, easily update, and uninstall.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#packaging"}},{"name":"Vulnerabilities","score":10,"reason":"0 existing vulnerabilities detected","details":null,"documentation":{"short":"Determines if the project has open, known unfixed vulnerabilities.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#vulnerabilities"}},{"name":"License","score":10,"reason":"license file detected","details":["Info: project has a license file: LICENSE:0","Info: FSF or OSI recognized license: Apache License 2.0: LICENSE:0"],"documentation":{"short":"Determines if the project has defined a license.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#license"}},{"name":"Signed-Releases","score":-1,"reason":"no releases found","details":null,"documentation":{"short":"Determines if the project cryptographically signs release artifacts.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#signed-releases"}},{"name":"Branch-Protection","score":0,"reason":"branch protection not enabled on development/release branches","details":["Warn: branch protection not enabled for branch 'master'"],"documentation":{"short":"Determines if the default and release branches are protected with GitHub's branch protection settings.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#branch-protection"}},{"name":"Pinned-Dependencies","score":0,"reason":"dependency not pinned by hash detected -- score normalized to 0","details":["Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_test.yml:9: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/build_test.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_test.yml:11: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/build_test.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_test.yml:43: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/build_test.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/build_test.yml:45: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/build_test.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/cffconvert.yml:14: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/cffconvert.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/cffconvert.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/cffconvert.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish_pypi.yml:17: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/publish_pypi.yml/master?enable=pin","Warn: GitHub-owned GitHubAction not pinned by hash: .github/workflows/publish_pypi.yml:20: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/publish_pypi.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/publish_pypi.yml:47: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/publish_pypi.yml/master?enable=pin","Warn: third-party GitHubAction not pinned by hash: .github/workflows/publish_pypi.yml:54: update your workflow using https://app.stepsecurity.io/secureworkflow/DeepRank/iScore/publish_pypi.yml/master?enable=pin","Warn: pipCommand not pinned by hash: .github/workflows/build_test.yml:19","Warn: pipCommand not pinned by hash: .github/workflows/build_test.yml:20","Warn: pipCommand not pinned by hash: .github/workflows/build_test.yml:53","Warn: pipCommand not pinned by hash: .github/workflows/build_test.yml:54","Warn: pipCommand not pinned by hash: .github/workflows/publish_pypi.yml:33","Info:   0 out of   7 GitHub-owned GitHubAction dependencies pinned","Info:   0 out of   3 third-party GitHubAction dependencies pinned","Info:   0 out of   5 pipCommand dependencies pinned"],"documentation":{"short":"Determines if the project has declared and pinned the dependencies of its build process.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#pinned-dependencies"}},{"name":"SAST","score":0,"reason":"SAST tool is not run on all commits -- score normalized to 0","details":["Warn: 0 commits out of 16 are checked with a SAST tool"],"documentation":{"short":"Determines if the project uses static code analysis.","url":"https://github.com/ossf/scorecard/blob/f6ed084d17c9236477efd66e5b258b9d4cc7b389/docs/checks.md#sast"}}]},"last_synced_at":"2025-08-14T20:57:30.407Z","repository_id":38709709,"created_at":"2025-08-14T20:57:30.407Z","updated_at":"2025-08-14T20:57:30.407Z"},"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273704961,"owners_count":25153254,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-05T02:00:09.113Z","response_time":402,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"DeepRank","name":"DeepRank","uuid":"31408512","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/31408512?v=4","repositories_count":19,"last_synced_at":"2024-05-06T00:03:19.394Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/DeepRank","funding_links":[],"total_stars":393,"followers":20,"following":0,"created_at":"2022-11-10T21:03:01.394Z","updated_at":"2024-05-06T00:03:19.947Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank/repositories"},"packages":[{"id":2770263,"name":"iscore","ecosystem":"pypi","description":"Scoring protein-protein interface using RWGK and SVM","homepage":"https://github.com/DeepRank/iScore","licenses":"Apache Software License 2.0","normalized_licenses":["Apache-2.0"],"repository_url":"https://github.com/DeepRank/iScore","keywords_array":["iScore"],"namespace":null,"versions_count":8,"first_release_published_at":"2019-08-23T11:39:56.000Z","latest_release_published_at":"2022-06-23T14:45:36.000Z","latest_release_number":"0.3.5","last_synced_at":"2025-08-03T21:17:35.638Z","created_at":"2022-04-10T11:20:22.968Z","updated_at":"2025-08-03T21:17:35.638Z","registry_url":"https://pypi.org/project/iscore/","install_command":"pip install iscore --index-url https://pypi.org/simple","documentation_url":"https://iscore.readthedocs.io/","metadata":{"funding":null,"documentation":null,"classifiers":["Development Status :: 2 - Pre-Alpha","Intended Audience :: Developers","Intended Audience :: Science/Research","License :: OSI Approved :: Apache Software License","Natural Language :: English","Programming Language :: Python :: 3.7","Topic :: Scientific/Engineering :: Bio-Informatics"],"normalized_name":"iscore"},"repo_metadata":{"id":38709709,"uuid":"137098046","full_name":"DeepRank/iScore","owner":"DeepRank","description":"iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines","archived":false,"fork":false,"pushed_at":"2022-06-25T09:12:45.000Z","size":21654,"stargazers_count":31,"open_issues_count":12,"forks_count":10,"subscribers_count":3,"default_branch":"master","last_synced_at":"2025-06-01T12:45:51.204Z","etag":null,"topics":[],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"apache-2.0","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/DeepRank.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":null,"funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":"CITATION.cff","codeowners":null,"security":null,"support":null,"governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":".zenodo.json"}},"created_at":"2018-06-12T16:16:02.000Z","updated_at":"2025-05-21T08:10:47.000Z","dependencies_parsed_at":"2022-09-14T02:51:36.262Z","dependency_job_id":null,"html_url":"https://github.com/DeepRank/iScore","commit_stats":null,"previous_names":[],"tags_count":5,"template":false,"template_full_name":null,"purl":"pkg:github/DeepRank/iScore","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/refs/heads/master","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/sbom","host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":263061020,"owners_count":23407597,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"},"owner_record":{"login":"DeepRank","name":"DeepRank","uuid":"31408512","kind":"organization","description":"","email":null,"website":null,"location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/31408512?v=4","repositories_count":19,"last_synced_at":"2024-05-06T00:03:19.394Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/DeepRank","funding_links":[],"total_stars":393,"followers":20,"following":0,"created_at":"2022-11-10T21:03:01.394Z","updated_at":"2024-05-06T00:03:19.947Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/DeepRank/repositories"},"tags":[{"name":"0.3.5","sha":"21089addee866f10527894ef2675dd05d3d5e269","kind":"commit","published_at":"2022-06-23T14:42:56.000Z","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/0.3.5","html_url":"https://github.com/DeepRank/iScore/releases/tag/0.3.5","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/DeepRank/iScore@0.3.5","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.5","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.5/manifests"},{"name":"0.3.4","sha":"b0b0a84ce69dcdbe6a0d74997c44392dff9a9873","kind":"commit","published_at":"2020-02-10T14:33:16.000Z","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/0.3.4","html_url":"https://github.com/DeepRank/iScore/releases/tag/0.3.4","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/DeepRank/iScore@0.3.4","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.4","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.4/manifests"},{"name":"0.3.0","sha":"b4b6c6267b23fc334a0939ddacb6bcb38c271633","kind":"commit","published_at":"2020-02-05T15:12:48.000Z","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/0.3.0","html_url":"https://github.com/DeepRank/iScore/releases/tag/0.3.0","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/DeepRank/iScore@0.3.0","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.0","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/0.3.0/manifests"},{"name":"v0.2","sha":"b8bd4d48462c392012b70b489a5e951a701739b9","kind":"commit","published_at":"2019-04-05T14:04:39.000Z","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/v0.2","html_url":"https://github.com/DeepRank/iScore/releases/tag/v0.2","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/DeepRank/iScore@v0.2","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/v0.2","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/v0.2/manifests"},{"name":"v0.1","sha":"b8bd4d48462c392012b70b489a5e951a701739b9","kind":"commit","published_at":"2019-04-05T14:04:39.000Z","download_url":"https://codeload.github.com/DeepRank/iScore/tar.gz/v0.1","html_url":"https://github.com/DeepRank/iScore/releases/tag/v0.1","dependencies_parsed_at":null,"dependency_job_id":null,"purl":"pkg:github/DeepRank/iScore@v0.1","tag_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/v0.1","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/tags/v0.1/manifests"}]},"repo_metadata_updated_at":"2025-07-02T01:36:22.567Z","dependent_packages_count":0,"downloads":69,"downloads_period":"last-month","dependent_repos_count":1,"rankings":{"downloads":23.122288581259134,"dependent_repos_count":21.71838761843193,"dependent_packages_count":10.002282794063202,"stargazers_count":12.255134197872092,"forks_count":10.164299210634848,"docker_downloads_count":null,"average":15.452478480452243},"purl":"pkg:pypi/iscore","advisories":[],"docker_usage_url":"https://docker.ecosyste.ms/usage/pypi/iscore","docker_dependents_count":null,"docker_downloads_count":null,"usage_url":"https://repos.ecosyste.ms/usage/pypi/iscore","dependent_repositories_url":"https://repos.ecosyste.ms/api/v1/usage/pypi/iscore/dependencies","status":null,"funding_links":[],"critical":null,"issue_metadata":{"last_synced_at":"2025-07-02T01:36:16.598Z","issues_count":24,"pull_requests_count":11,"avg_time_to_close_issue":4591240.923076923,"avg_time_to_close_pull_request":6019122.0,"issues_closed_count":13,"pull_requests_closed_count":10,"pull_request_authors_count":5,"issue_authors_count":8,"avg_comments_per_issue":1.25,"avg_comments_per_pull_request":0.5454545454545454,"merged_pull_requests_count":10,"bot_issues_count":1,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/issues","maintainers":[{"login":"CunliangGeng","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/CunliangGeng"},{"login":"NicoRenaud","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/NicoRenaud"}],"active_maintainers":[]},"versions_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/iscore/versions","version_numbers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/iscore/version_numbers","dependent_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/iscore/dependent_packages","related_packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages/iscore/related_packages","maintainers":[{"uuid":"CunliangGeng","login":"CunliangGeng","name":null,"email":null,"url":null,"packages_count":7,"html_url":"https://pypi.org/user/CunliangGeng/","role":null,"created_at":"2023-02-24T11:51:10.664Z","updated_at":"2023-02-24T11:51:10.664Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/CunliangGeng/packages"},{"uuid":"nico_reno","login":"nico_reno","name":null,"email":null,"url":null,"packages_count":8,"html_url":"https://pypi.org/user/nico_reno/","role":null,"created_at":"2023-02-24T11:51:10.669Z","updated_at":"2023-02-24T11:51:10.669Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers/nico_reno/packages"}],"registry":{"name":"pypi.org","url":"https://pypi.org","ecosystem":"pypi","default":true,"packages_count":724969,"maintainers_count":308288,"namespaces_count":0,"keywords_count":237984,"github":"pypi","metadata":{"funded_packages_count":50481},"icon_url":"https://github.com/pypi.png","created_at":"2022-04-04T15:19:23.364Z","updated_at":"2025-09-04T05:23:51.177Z","packages_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/packages","maintainers_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/maintainers","namespaces_url":"https://packages.ecosyste.ms/api/v1/registries/pypi.org/namespaces"}}],"commits":{"id":597045,"full_name":"DeepRank/iScore","default_branch":"master","committers":[{"name":"Nicolas Renaud","email":"n.renaud@tudelft.nl","login":null,"count":156},{"name":"Cunliang Geng","email":"c.geng@esciencecenter.nl","login":null,"count":58},{"name":"NicoRenaud","email":"nicolas.gm.renaud@gmail.com","login":null,"count":25},{"name":"CunliangGeng","email":"c.geng@uu.nl","login":null,"count":2},{"name":"Abel Soares Siqueira","email":"abel.s.siqueira@gmail.com","login":null,"count":2},{"name":"Li Xue","email":"me.lixue@gmail.com","login":null,"count":1},{"name":"dependabot-preview[bot]","email":"27856297+dependabot-preview[bot]","login":"dependabot-preview[bot]","count":1}],"total_commits":245,"total_committers":7,"total_bot_commits":1,"total_bot_committers":1,"mean_commits":35.0,"dds":0.363265306122449,"past_year_committers":[],"past_year_total_commits":0,"past_year_total_committers":0,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":0.0,"past_year_dds":0.0,"last_synced_at":"2023-10-25T14:12:27.401Z","last_synced_commit":"ccfa5b332670ffa71d0e994d558a90c2b29f7002","created_at":"2023-03-09T06:38:00.151Z","updated_at":"2023-10-25T14:12:27.402Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-05T00:00:10.343Z","repositories_count":5480019,"commits_count":853389012,"contributors_count":31098138,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"DeepRank/iScore","html_url":"https://github.com/DeepRank/iScore","last_synced_at":"2025-07-02T01:36:16.598Z","status":null,"issues_count":24,"pull_requests_count":11,"avg_time_to_close_issue":4591240.923076923,"avg_time_to_close_pull_request":6019122.0,"issues_closed_count":13,"pull_requests_closed_count":10,"pull_request_authors_count":5,"issue_authors_count":8,"avg_comments_per_issue":1.25,"avg_comments_per_pull_request":0.5454545454545454,"merged_pull_requests_count":10,"bot_issues_count":1,"bot_pull_requests_count":1,"past_year_issues_count":0,"past_year_pull_requests_count":0,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":null,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":0,"past_year_pull_request_authors_count":0,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":null,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":0,"created_at":"2023-05-14T16:05:59.529Z","updated_at":"2025-07-02T01:36:16.599Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/DeepRank%2FiScore/issues","issue_labels_count":{"bug":2,"enhancement":2},"pull_request_labels_count":{"dependencies":1},"issue_author_associations_count":{"CONTRIBUTOR":17,"NONE":4,"MEMBER":3},"pull_request_author_associations_count":{"MEMBER":8,"CONTRIBUTOR":2,"NONE":1},"issue_authors":{"LilySnow":16,"CunliangGeng":2,"dependabot-preview[bot]":1,"NickEdmunds":1,"NicoRenaud":1,"zjq101":1,"jiyanbio":1,"thuxugang":1},"pull_request_authors":{"CunliangGeng":6,"NicoRenaud":2,"dependabot-preview[bot]":1,"dragon0113":1,"abelsiqueira":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-22T00:00:16.838Z","repositories_count":8477485,"issues_count":15901687,"pull_requests_count":37901090,"authors_count":5664582,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{},"past_year_issue_authors":{},"past_year_pull_request_authors":{},"maintainers":[{"login":"CunliangGeng","count":8,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/CunliangGeng"},{"login":"NicoRenaud","count":3,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/NicoRenaud"}],"active_maintainers":[]},"events":{"total":{"WatchEvent":4},"last_year":{"WatchEvent":4}},"keywords":[],"dependencies":[{"ecosystem":"pypi","filepath":"setup.py","sha":null,"kind":"manifest","created_at":"2022-09-14T02:51:35.799Z","updated_at":"2022-09-14T02:51:35.799Z","repository_link":"https://github.com/DeepRank/iScore/blob/master/setup.py","dependencies":[{"id":4788952975,"package_name":"numpy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952976,"package_name":"scipy","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952977,"package_name":"biopython","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952978,"package_name":"mpi4py","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952979,"package_name":"h5py","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952980,"package_name":"matplotlib","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952981,"package_name":"libsvm","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952982,"package_name":"pdb2sql","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952983,"package_name":"pssmgen","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false},{"id":4788952984,"package_name":"h5xplorer","ecosystem":"pypi","requirements":"*","direct":true,"kind":"runtime","optional":false}]}],"score":9.983776383764932,"created_at":"2025-09-04T15:50:59.136Z","updated_at":"2025-10-07T08:12:01.779Z","avatar_url":"https://github.com/DeepRank.png","language":"Python","category":null,"sub_category":null,"monthly_downloads":69,"funding_links":[],"readme_doi_urls":["https://doi.org/10.5281/zenodo.2630566","https://doi.org/10.1093/bioinformatics/btz496","https://doi.org/10.1016/j.softx.2020.100462"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/26893","html_url":"https://science.ecosyste.ms/projects/26893","bibtex_url":"https://science.ecosyste.ms/projects/26893/export.bibtex","apalike_url":"https://science.ecosyste.ms/projects/26893/export.apalike"}