{"id":2739,"name":"q2-sample-classifier","description":"q2-sample-classifier: machine-learning tools for microbiome classification and regression - Published in JOSS (2018)","url":"https://github.com/qiime2/q2-sample-classifier","last_synced_at":"2025-09-04T16:52:01.204Z","repository":{"id":20447524,"uuid":"89936631","full_name":"qiime2/q2-sample-classifier","owner":"qiime2","description":"QIIME 2 plugin for machine learning prediction of sample data.","archived":false,"fork":false,"pushed_at":"2025-08-27T22:51:28.000Z","size":21265,"stargazers_count":6,"open_issues_count":15,"forks_count":34,"subscribers_count":11,"default_branch":"dev","last_synced_at":"2025-08-28T02:28:11.347Z","etag":null,"topics":["hacktoberfest"],"latest_commit_sha":null,"homepage":"","language":"Python","has_issues":true,"has_wiki":null,"has_pages":null,"mirror_url":null,"source_name":null,"license":"bsd-3-clause","status":null,"scm":"git","pull_requests_enabled":true,"icon_url":"https://github.com/qiime2.png","metadata":{"files":{"readme":"README.md","changelog":null,"contributing":".github/CONTRIBUTING.md","funding":null,"license":"LICENSE","code_of_conduct":null,"threat_model":null,"audit":null,"citation":null,"codeowners":null,"security":null,"support":".github/SUPPORT.md","governance":null,"roadmap":null,"authors":null,"dei":null,"publiccode":null,"codemeta":null,"zenodo":null}},"created_at":"2017-05-01T15:35:24.000Z","updated_at":"2025-08-27T22:51:30.000Z","dependencies_parsed_at":"2023-02-11T21:01:41.268Z","dependency_job_id":"1ddfe4a1-b80e-4912-a866-7aef30de58bf","html_url":"https://github.com/qiime2/q2-sample-classifier","commit_stats":null,"previous_names":[],"tags_count":81,"template":false,"template_full_name":null,"purl":"pkg:github/qiime2/q2-sample-classifier","repository_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier","tags_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/tags","releases_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/releases","manifests_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/manifests","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qiime2","download_url":"https://codeload.github.com/qiime2/q2-sample-classifier/tar.gz/refs/heads/dev","sbom_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/sbom","scorecard":null,"host":{"name":"GitHub","url":"https://github.com","kind":"github","repositories_count":273523663,"owners_count":25120864,"icon_url":"https://github.com/github.png","version":null,"created_at":"2022-05-30T11:31:42.601Z","updated_at":"2022-07-04T15:15:14.044Z","status":"online","status_checked_at":"2025-09-03T02:00:09.631Z","response_time":76,"last_error":null,"robots_txt_status":"success","robots_txt_updated_at":"2025-07-24T06:49:26.215Z","robots_txt_url":"https://github.com/robots.txt","online":true,"can_crawl_api":true,"host_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories","repository_names_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/repository_names","owners_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners"}},"owner":{"login":"qiime2","name":"QIIME 2","uuid":"18176583","kind":"organization","description":"","email":null,"website":"https://qiime2.org","location":null,"twitter":null,"company":null,"icon_url":"https://avatars.githubusercontent.com/u/18176583?v=4","repositories_count":61,"last_synced_at":"2023-04-03T19:50:27.410Z","metadata":{"has_sponsors_listing":false},"html_url":"https://github.com/qiime2","funding_links":[],"total_stars":null,"followers":null,"following":null,"created_at":"2022-11-04T12:10:25.968Z","updated_at":"2023-04-03T19:50:27.783Z","owner_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qiime2","repositories_url":"https://repos.ecosyste.ms/api/v1/hosts/GitHub/owners/qiime2/repositories"},"packages":[],"commits":{"id":9625870,"full_name":"qiime2/q2-sample-classifier","default_branch":"dev","committers":[{"name":"nbokulich","email":"nbokulich@gmail.com","login":"nbokulich","count":141},{"name":"q2d2","email":"q2d2.noreply@gmail.com","login":"q2d2","count":94},{"name":"Matthew Dillon","email":"matthewrdillon@gmail.com","login":"thermokarst","count":21},{"name":"Liz Gehret","email":"54517601+lizgehret","login":"lizgehret","count":15},{"name":"Evan Bolyen","email":"ebolyen@gmail.com","login":"ebolyen","count":10},{"name":"Oddant1","email":"oddant1@hotmail.com","login":"Oddant1","count":8},{"name":"Anja Adamov","email":"57316423+adamovanja","login":"adamovanja","count":3},{"name":"David Rodriguez","email":"davidrod805@gmail.com","login":"David-Rod","count":3},{"name":"Greg Caporaso","email":"gregcaporaso@gmail.com","login":"gregcaporaso","count":3},{"name":"Chris Keefe","email":"39198770+ChrisKeefe","login":"ChrisKeefe","count":2},{"name":"Jai Ram Rideout","email":"jai.rideout@gmail.com","login":"jairideout","count":2},{"name":"Jiung-Wen","email":"30737103+Jiung-Wen","login":"Jiung-Wen","count":2},{"name":"colinvwood","email":"68213641+colinvwood","login":"colinvwood","count":2},{"name":"David_Rodriguez","email":"30784905+Davrod29","login":"Davrod29","count":1},{"name":"Hannah Hagen","email":"125509369+hagenjp","login":"hagenjp","count":1},{"name":"Leo-Simpson","email":"52931376+Leo-Simpson","login":"Leo-Simpson","count":1},{"name":"Michal Ziemski","email":"michal@terrestryal.com","login":"misialq","count":1},{"name":"TrellixVulnTeam","email":"112716341+TrellixVulnTeam","login":"TrellixVulnTeam","count":1},{"name":"Turan Naimey","email":"turan1naimey@gmail.com","login":"turanoo","count":1},{"name":"Valentyn Bezshapkin","email":"61702053+valentynbez","login":"valentynbez","count":1},{"name":"cduvallet","email":"cduvallet@gmail.com","login":"cduvallet","count":1},{"name":"justin212k","email":"justinak@gmail.com","login":"justin212k","count":1}],"total_commits":315,"total_committers":22,"total_bot_commits":0,"total_bot_committers":0,"mean_commits":14.318181818181818,"dds":0.5523809523809524,"past_year_committers":[{"name":"q2d2","email":"q2d2.noreply@gmail.com","login":"q2d2","count":8},{"name":"Liz Gehret","email":"54517601+lizgehret","login":"lizgehret","count":4}],"past_year_total_commits":12,"past_year_total_committers":2,"past_year_total_bot_commits":0,"past_year_total_bot_committers":0,"past_year_mean_commits":6.0,"past_year_dds":0.33333333333333337,"last_synced_at":"2025-08-07T08:16:55.957Z","last_synced_commit":"61311891dd1895166d474170af35cd7821dfbabd","created_at":"2025-04-11T11:35:32.293Z","updated_at":"2025-08-07T08:16:55.958Z","commits_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/commits","host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-08-27T00:00:29.048Z","repositories_count":5479765,"commits_count":853308191,"contributors_count":31095157,"owners_count":906558,"icon_url":"https://github.com/github.png","host_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://commits.ecosyste.ms/api/v1/hosts/GitHub/repositories"}},"issues_stats":{"full_name":"qiime2/q2-sample-classifier","html_url":"https://github.com/qiime2/q2-sample-classifier","last_synced_at":"2025-08-31T21:36:18.808Z","status":"error","issues_count":38,"pull_requests_count":62,"avg_time_to_close_issue":47590880.583333336,"avg_time_to_close_pull_request":4720688.822580645,"issues_closed_count":24,"pull_requests_closed_count":62,"pull_request_authors_count":24,"issue_authors_count":8,"avg_comments_per_issue":1.631578947368421,"avg_comments_per_pull_request":2.3225806451612905,"merged_pull_requests_count":50,"bot_issues_count":0,"bot_pull_requests_count":0,"past_year_issues_count":0,"past_year_pull_requests_count":4,"past_year_avg_time_to_close_issue":null,"past_year_avg_time_to_close_pull_request":198362.0,"past_year_issues_closed_count":0,"past_year_pull_requests_closed_count":4,"past_year_pull_request_authors_count":2,"past_year_issue_authors_count":0,"past_year_avg_comments_per_issue":null,"past_year_avg_comments_per_pull_request":0.0,"past_year_bot_issues_count":0,"past_year_bot_pull_requests_count":0,"past_year_merged_pull_requests_count":3,"created_at":"2025-04-11T11:35:32.898Z","updated_at":"2025-09-03T04:49:29.210Z","repository_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier","issues_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories/qiime2%2Fq2-sample-classifier/issues","issue_labels_count":{"enhancement":8,"good first issue":8,"help wanted":5,"bug-sev:2|low":5,"lang:python":4,"type:improvement":3,"type:bug":3,"scope:0|this-project":3,"diff:1|beginner":2,"time:1|short":2,"bug-sev:3|medium":2,"bug-type:2|workaround-req":2,"weight:0|someday":1,"Hacktoberfest":1,"src:self":1,"bug-type:1|cosmetic":1,"bug-type:4|retraction":1,"bug-sev:1|negligible":1,"weight:2|moderate":1,"time:2|medium":1,"scope:1|several-projects":1,"diff:2|intermediate":1,"src:forum":1},"pull_request_labels_count":{"bug-type:3|stops-work":2,"enhancement":2,"stat:blocking-other":2,"type:improvement":1,"type:bug":1,"stat:DO-NOT-MERGE":1,"bug-sev:3|medium":1,"lang:python":1,"scope:0|this-project":1,"src:forum":1,"bug-sev:2|low":1,"bug-sev:4|high":1},"issue_author_associations_count":{"MEMBER":28,"CONTRIBUTOR":5,"NONE":4,"COLLABORATOR":1},"pull_request_author_associations_count":{"MEMBER":42,"CONTRIBUTOR":17,"NONE":10,"COLLABORATOR":2},"issue_authors":{"nbokulich":26,"mortonjt":3,"thermokarst":3,"adamovanja":2,"ChrisKeefe":1,"Oddant1":1,"ebolyen":1,"emollier":1},"pull_request_authors":{"nbokulich":17,"Oddant1":9,"lizgehret":9,"q2d2":4,"David-Rod":4,"adamovanja":3,"colinvwood":3,"Jiung-Wen":2,"emollier":2,"mortonjt":2,"athos-ribeiro":2,"danteese":1,"misialq":1,"TrellixVulnTeam":1,"valentynbez":1,"Leo-Simpson":1,"gregcaporaso":1,"turanoo":1,"jindongmin":1,"thermokarst":1,"hagenjp":1,"mdb571":1,"ChrisKeefe":1,"rrrrrrmb":1,"cduvallet":1},"host":{"name":"GitHub","url":"https://github.com","kind":"github","last_synced_at":"2025-09-03T00:00:08.273Z","repositories_count":10065497,"issues_count":31124289,"pull_requests_count":94727574,"authors_count":10687451,"icon_url":"https://github.com/github.png","host_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub","repositories_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/repositories","owners_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/owners","authors_url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors"},"past_year_issue_labels_count":{},"past_year_pull_request_labels_count":{},"past_year_issue_author_associations_count":{},"past_year_pull_request_author_associations_count":{"MEMBER":9},"past_year_issue_authors":{},"past_year_pull_request_authors":{"lizgehret":5,"q2d2":4},"maintainers":[{"login":"nbokulich","count":43,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/nbokulich"},{"login":"Oddant1","count":10,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Oddant1"},{"login":"lizgehret","count":9,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lizgehret"},{"login":"q2d2","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/q2d2"},{"login":"Jiung-Wen","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/Jiung-Wen"},{"login":"ChrisKeefe","count":2,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ChrisKeefe"},{"login":"gregcaporaso","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/gregcaporaso"},{"login":"ebolyen","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/ebolyen"},{"login":"turanoo","count":1,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/turanoo"}],"active_maintainers":[{"login":"lizgehret","count":5,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/lizgehret"},{"login":"q2d2","count":4,"url":"https://issues.ecosyste.ms/api/v1/hosts/GitHub/authors/q2d2"}]},"events":{"total":{"DeleteEvent":10,"PushEvent":20,"PullRequestEvent":9,"CreateEvent":22},"last_year":{"DeleteEvent":10,"PushEvent":20,"PullRequestEvent":9,"CreateEvent":22}},"keywords":["hacktoberfest"],"dependencies":[{"ecosystem":"actions","filepath":".github/workflows/add-to-project-ci.yml","sha":null,"kind":"manifest","created_at":"2023-01-11T20:51:00.168Z","updated_at":"2023-01-11T20:51:00.168Z","repository_link":"https://github.com/qiime2/q2-sample-classifier/blob/dev/.github/workflows/add-to-project-ci.yml","dependencies":[{"id":6872083668,"package_name":"actions/add-to-project","ecosystem":"actions","requirements":"v0.3.0","direct":true,"kind":"composite","optional":false}]},{"ecosystem":"actions","filepath":".github/workflows/ci.yml","sha":null,"kind":"manifest","created_at":"2023-01-11T20:51:00.215Z","updated_at":"2023-01-11T20:51:00.215Z","repository_link":"https://github.com/qiime2/q2-sample-classifier/blob/dev/.github/workflows/ci.yml","dependencies":[{"id":6872083669,"package_name":"actions/checkout","ecosystem":"actions","requirements":"v2","direct":true,"kind":"composite","optional":false},{"id":6872083670,"package_name":"actions/setup-python","ecosystem":"actions","requirements":"v1","direct":true,"kind":"composite","optional":false},{"id":6872083671,"package_name":"qiime2/action-library-packaging","ecosystem":"actions","requirements":"alpha1","direct":true,"kind":"composite","optional":false}]}],"score":6.135564891081739,"created_at":"2025-09-04T09:18:05.446Z","updated_at":"2025-10-07T08:04:41.833Z","avatar_url":"https://github.com/qiime2.png","language":"Python","category":"Scientific Software","sub_category":"Peer-reviewed","monthly_downloads":0,"funding_links":[],"readme_doi_urls":[],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":[],"project_url":"https://science.ecosyste.ms/api/v1/projects/2739","html_url":"https://science.ecosyste.ms/projects/2739"}